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78 results for “host-specificity”
Figure 1 in Developmental stages and growth of Pseudocaligus fugu Yamaguti, 1936 (Copepoda: Siphonostomatoida: Caligidae) host-specific to Puffer
Figure 1. Zero-year cultured tiger puffer Takifugu rubripes infected by Pseudocaligus fugu (indicated by small arrows). Scale = 50 mm.
Part 3: Dataset and script for a manuscript entitled 'Host-specific subtelomere: structural variation and horizontal transfer in asexual filamentous fungal pathogens'
<p>Datasets, scripts and instructions for reproducing some of the results in the manuscript. The file subtelomere.tar needs to be unpacked on a Linux system. After unpacking it, go to the directory subtelomere, which contains a number of subdirectories. One subdirectory is named data, which contains genome assemblies and is used to hold datasets of short reads; the datasets of short reads in the files Data.One.Focb.tar, Data.One.Focb-2.tar and reads.tar on the four-part depository need to be placed in the subdirectory subtelomere/data/reads/.</p> <p>The other subdirectories in the directory subtelomere contain instructions and scripts for reproducing many of the results in the manuscript. The subdirectory subtelomere/TwoCopies/ contains two subdirectories of instructions and scripts for reproducing the results in the table on the average coverage of Focb TR4 isolates. The subdirectory subtelomere/TEs/ contains four subdirectories, each of which provides instructions and scripts for estimating the copy numbers of one or two transposons in the table on the copy numbers of five transposons in Focb TR4 isolates. The subdirectory subtelomere/SVs/ explains how the results on SNPs and presence/absence polymorphisms could be reproduced. The subdirectory subtelomere/Fol/ contains three subdirectories, each of which includes information for reproducing one of the three columns in the table on mean SNP rates between Fol D11 and each of Fol4287, Fol069 and Fol072. The subdirectory subtelomere/Forc/ demonstrates how some of the programs and scripts developed by the author are used to analyze a genome assembly of Forc isolate Forc016. The subdirectory subtelomere/pub/ contains the source and executable code of those programs. See the README and z.cmd files in each leaf subdirectory for more information</p>
Data for: Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids
<p><span>Antibiotic resistance encoded on plasmids is a pressing global health problem. Predicting which plasmids spread in the long term remains very challenging, even though some key parameters influencing plasmid stability have been identified, such as plasmid growth costs and horizontal transfer rates. Here, we show these parameters evolve in a strain-specific way among clinical plasmids and bacteria, and this occurs rapidly enough to alter the relative likelihoods of different bacterium-plasmid combinations spreading. We used experiments with <em>Escherichia</em> <em>coli</em> and antibiotic-resistance plasmids isolated from patients, paired with a mathematical model, to track long-term plasmid stability (beyond antibiotic exposure). Explaining variable stability across six bacterium-plasmid combinations required accounting for evolutionary changes in plasmid-stability traits, whereas initial variation of these parameters </span><span>was a relatively poor predictor of long-term outcomes</span><span>. Evolutionary trajectories were specific to particular bacterium-plasmid combinations, as evidenced by genome sequencing and genetic manipulation. This revealed epistatic (here, strain-dependent) effects of key genetic changes affecting horizontal plasmid transfer. Several genetic changes involved mobile elements and pathogenicity islands. Rapid strain-specific evolution can thus outweigh ancestral phenotypes as a predictor of plasmid stability. Accounting for strain-specific plasmid evolution in natural populations could improve our ability to anticipate and manage successful bacterium-plasmid combinations.</span></p>
FIGURE 10 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 10. Discriminant function analysis (DFA) of T. neocaledonicus treated clearing agent. (A) DFA of cassava male mite vs. cassava male cleared mite; (B) DFA of cassava female mite vs. cassava female mite cleared; (C) DFA of moringa male mite vs. moringa male mite cleared; (D) DFA of moringa female mite vs. moringa female cleared.
FIGURE 3 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 3. Discriminant function analysis (DFA) of T. neocaledonicus collected from two host plants, moringa and cassava. (A) DFA of cassava male mite vs. cassava female mite; (B) DFA of moringa male mite vs. moringa female mite; (C) DFA of cassava male mite vs. moringa male mite; (D) DFA of cassava male mite vs. moringa male mite.
FIGURE 2 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 2. Shape and size morphospace distribution of T. neocaledonicus collected from moringa and cassava. (A) Principal components (PCs) morphospace distribution analysis; (B) Canonical variates analysis (CVA) morphospace analysis.
FIGURE 5 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 5. Phylogenetic signal analysis of T. neocaledonicus collected from two hosts, moringa and cassava. (A) Size phylogenetic analysis; (B) Shape phylogenetic analysis. A—cassava male mite; B—moringa male mite; E—Cassava female mite; F—moringa female mite.
FIGURE 9 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 9. Morphospace distribution of T. neocaledonicus collected from two hosts, and the mites treated with clearing agent (lactic acid). (A) Principal components (PCs) morphospace analysis; (B) Canonical variate analysis (CVA). A—cassava male mite, B—moringa male mite, C—Cassava male mite cleared, D—moringa male mite cleared, E—cassava female mite, F—moringa female mite, G—Cassava female mite cleared, and H—moringa female mite cleared.
FIGURE 11 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 11. Principal component analysis (PCA) of cleared T. neocaledonicus shape variations visualized in a distortion grid. (A) variance graph of cassava male mite cleared; (B), (C), and (D) is the PC1, PC2, and PC3 of cassava male spider mites cleared, respectively; (E) variance graph of cassava female mite cleared; (F), (G), and (H) is the PC1, PC2, and PC3 of cassava female spider mites cleared, respectively; (I) variance graph of moringa male mite cleared; (J), (K), and (L) is the PC1, PC2, and PC3 of moringa male spider mites cleared, respectively; (M) variance graph of moringa female mite cleared; (N), (O), and (P) is the PC1, PC2, and PC3 of cassava male spider mites cleared, respectively.
FIGURE 1 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 1. Tetranychus neocaledonicus (A) colony (B) Adult T. neocaledonicus (C) male T. neocaledonicus with landmarks (D) female T. neocaledonicus with landmarks (landmarks description, Table S1).
FIGURE 8 in Molecular and morphometric analyses reveal host-specific cryptic speciation in a mite species, Tetranychus neocaledonicus (Andre, 1933) (Acari: Tetranychidae)
FIGURE 8. Hierarchical cluster dendrogram analysis based on (A) Mahalanobis distance dendrogram; (B) Procrustes distance. Spider mite collected from moringa highlighted in red color, and blue color is mite collected from cassava. Normal mite without using any clearing agent in highlighted in bold letter, normal colored letter indicated as the spider mites treated with clearing agent, i.e., lactic acid.
Data from: Long-term effects of host-specific soil microbiota on plant interactions
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Data from: Host-specific effects of soil microbial filtrates prevail over those of arbuscular mycorrhizae in a fragmented landscape
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Data from: Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites
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Data from: Malagasy bats shelter a considerable genetic diversity of pathogenic Leptospira suggesting notable host-specificity patterns
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Alpha-diversity, Beta-diversity and host-specificity of wood-boring longhorn beetle (Cerambycidea) in Asian tropical and subtropical forests
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Data for: Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids
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Data from: Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes
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Data from: Transcriptomics of host-specific interactions in natural populations of the parasitic plant purple witchweed (Striga hermonthica)
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Limited host-specificity of eukaryotic virome in Hymenoptera
<p>Additional datafiles for Bee_Euvir repository.</p>
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.