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2,281 results for “laboratory”
Dataset for publication: An inter-laboratory study characterizes the impact of bioinformatic approaches on genome-based cluster detection for foodborne bacterial pathogens
<p>This dataset is part of a dry-lab interlaboratory study conducted across Germany, regarding bacterial outbreak detection based on NGS data, with a focus on bioinformatic analysis of four species to identify potential variability caused by different data analysis approaches and human interpretation. Participants were asked to follow their usual in-house protocols while adhering to the general guidelines. A quality assessment (with sample exclusion) was followed by 7-gene Multilocus-Sequence Typing (MLST), core genome Multilocus Sequencing Typing (cgMLST), and SNP calling. The participants were then asked to identify clusters. The study was not intended to resemble a standard proficiency test with a passing/failing grade, but rather to investigate and quantify obvious variability in the results and, where possible, the reasons for it. For this purpose, the datasets included borderline cases in terms of quality.</p>
Machine Learning Predicts Meter-Scale Laboratory Earthquakes
<p>Numerical data and Python scripts used to make Figures in the manuscript entitled "Machine Learning Predicts Meter-Scale Laboratory Earthquakes". We provide the data and scripts to create Figures 1 to 6 from the main text and Figures S1 to S15 from the supplementary information. Note that you should download the experimental catalog of Yamashita et al. (Nature Comm, 2021) and address the request for shear force data (experimental number LB12-011) to Futoshi Yamashita, the organizer of the target experiment. This code is developed using Python 3.11.7.</p>
Data to reproduce the results presented in Lake et al. 2021. Journal of Soils and Sediments, https://doi.org/10.1007/s11368-021-03107-6 ("High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting")
<p>This repository contains data on (1) the absorbance data and (2) the measured concentrations, to reproduce computational results as presented in:<br> "High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting".</p> <p> <br> 1. Absorbance data (200-730 nm wavelengths):</p> <p> * Average absorbance compensated for measured concentrations (average absorbance value per concentration)<br> * Average absorbance compensated for theoretical concentrations (average absorbance value per concentration)<br> * Average raw absorbance measured (average absorbance value per concentration)<br> * Raw absorbance measured (all absorbance values for all concentrations)</p> <p> Data in all 3 files is indicated per soil sample / mixture, with corresponding fraction(s) of soil sample(s) and corresponding (theoretical) input concentration.<br> <br> 2. Measured concentration data:</p> <p> * Measured concentration (average concentrations, tested for all experiments and for all theoretical input concentrations)</p> <p> </p>
Needs of plant health laboratories and applicability of the horizontal proficiency testing approach based on the questionnaire answers
<p>Data collected in the framework of work package 5 of the Valitest project. They correspond to the needs and expectation concerning proficiency assessment expressed by plant health laboratories during a survey conducted online in 2019.</p>
Laboratory comparison of low-cost particulate matter sensors to measure transient events of pollution - Dataset
<p>This repository contains the data associated with the paper: Laboratory comparison of low-cost particulate matter sensors to measure transient events of pollution.</p> <p>Bulot, F.M.J.; Russell, H.S.; Rezaei, M.; Johnson, M.S.; Ossont, S.J.J.; Morris, A.K.R.; Basford, P.J.; Easton, N.H.C.; Foster, G.L.; Loxham, M.; Cox, S.J. Laboratory Comparison of Low-Cost Particulate Matter Sensors to Measure Transient Events of Pollution. <em>Sensors</em> <strong>2020</strong>, <em>20</em>, 2219.</p> <p><a href="https://doi.org/10.3390/s20082219">https://doi.org/10.3390/s20082219</a> </p> <p>It contains:</p> <p>- DHT22.csv measurements from the DHT22 humidity and temperature sensor</p> <p>- dusttrak.csv measurements from the DustTrak</p> <p>- ops.csv measurements from the OPS TSI 3330</p> <p>- sensors.csv measurement from the low-cost PM sensors</p> <p>- sensors_blank.csv measurements from the low-cost PM sensors during the blank test</p> <p> </p> <p>sensors_blank.csv contains the following variables:</p> <ul> <li>Bin1 to Bin15: particle numbers for different bin sizes reported by the Alphasense OPCR1, as defined by its user's manual available here https://www.alphasense.com/products/optical-particle-counter/</li> <li>SamplingPeriod: sampling period of the Alphasense OPCR1 in seconds</li> <li>SFR: sampling flow rate of the Alphasense OPCR1 in ml/s</li> <li>PM1, PM25, PM4, PM10: PM concentrations reported by the sensors in ug/m3.</li> <li>gr03um to gr100um: particle number concentrations for different bin sizes for the Plantower PMS5003, in particle per 100ml, as defined by its user's manual https://aqicn.org/air/view/sensor/spec/pms5003-manual_v2-3</li> <li>n05 to n10: particle number concentrations for different bin sizes for the Sensirion SPS30, in particles per cm3, as defined by its user's manual: https://www.sensirion.com/fileadmin/user_upload/customers/sensirion/Dokumente/9.6_Particulate_Matter/Datasheets/Sensirion_PM_Sensors_Datasheet_SPS30.pdf</li> <li>humidity and temperature: relative humidity (%) and temperature (Celsius) recorded by the SHT35 sensors</li> <li>sensor: sensor identifier</li> <li>site: name of the air quality monitor containing the sensors</li> <li>exp: name of the experiment considered</li> <li>source: source of PM used</li> <li>variation: peak or stable concentration</li> <li>date: date and time of the experiment</li> </ul>
Periodic Hydraulic Testing Dataset for "Borehole-based fracture unclogging experiment: bridging the gap between laboratory- and field-scale evidence (FRANC)"
<p>This dataset is associated with the SNSF-SPARK project “Borehole-based fracture unclogging experiment: bridging the gap between laboratory- and field-scale evidence (FRANC)”. Please read the ReadMe file for more information.</p>
Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022.
<p>Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022. These data were used to estimate the time-varying reproduction number (R) in South Africa, as described in https://www.medrxiv.org/content/10.1101/2022.07.22.22277932v1.full.</p>
ENDGAME - Laboratory Experiment 2023-02-20 Exp. 001 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-20 Exp. 002 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p> <p> </p>
ENDGAME - Laboratory Experiment 2023-02-20 Exp. 005 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p> <p> </p>
ENDGAME - Laboratory Experiment 2023-02-20 Exp. 003 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-20 Exp. 004 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 014 - High Speed Camera data
<div> <p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p> <p> </p> </div>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 018 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 013 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 010 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 016 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 017 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 011 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ENDGAME - Laboratory Experiment 2023-02-21 Exp. 009 - High Speed Camera data
<p>Shock-tube experiments in combination with high speed Schlieren shadow photography. </p> <p>The shocktube setup consists of a high-pressure reservoir connected with a cylindrical tube through a diaphragm pulse valve which allows a fast release of pressurized gas into the ambient pressure tube. The high-pressure reservoir is filled with compressed air at a given overpressure with respect to ambient pressure (up to 8 bar). The pipe was either empty (i.e. with air at ambient conditions) or filled with a given amount of fluids (water or viscous fluid) or small particles. We adopted pipes with different inner diameters (3 and 4 cm) and different lengths (30 and 80 cm). Images were collected at a frame rate of 30000 fps.</p> <p>When the valve is open, a jet flow is produced, with shock and acoustic waves propagating in the atmosphere, which become visible due to the high speed Schlieren shadow photography.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.