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59 results for “microbial nitrogen”
Nitrogen enrichment causes the thermal adaptation of soil microbial respiration
<p>As the climate warms, the feedback between soil carbon (C) and climate has the potential to decrease in magnitude over time due to the thermal adaptation of microbial respiration. However, the strength of microbial thermal adaptation (i.e., the degree to which microbial respiration adapts to temperature change) is uncertain, partly because the response of microbial respiration is regulated by multiple environmental factors acting simultaneously rather than by temperature alone; however, the combined effects of an environmental factor and warming on the thermal adaptation of microbial respiration have never been assessed. Using a 9-year two-way factorial experiment involving warming (daytime: 1.80℃; nighttime: 0.77℃) and nitrogen (N) enrichment (up to 15 g m<sup>-2</sup> y<sup>-1</sup>) treatments in an alpine permafrost on the Tibetan Plateau, we show that microbial respiration adapts to warming only under exogenous N enrichment and that the strength of thermal adaptation gradually increases as N enrichment increases. We identified two contrasting pathways by which N enrichment appears to affect the strength of thermal adaptation—via an increase caused by soil acidification and a decrease caused by the inhibition of soil C availability and stimulation of soil C-degrading enzymes—with a net positive effect of N enrichment on microbial thermal adaptation. Our findings emphasize the importance of considering multiple environmental change factors in shaping the strength of thermal adaptation when predicting future soil C-climate feedbacks.</p>
Data from: Assessing the effects of iron enrichment across holobiont compartments reveals reduced microbial nitrogen fixation in the Red Sea coral Pocillopora verrucosa
The productivity of coral reefs in oligotrophic tropical waters is sustained by an efficient uptake and recycling of nutrients. In reef-building corals, the engineers of these ecosystems, this nutrient recycling is facilitated by a constant exchange of nutrients between the animal host and endosymbiotic photosynthetic dinoflagellates (zooxanthellae), bacteria, and other microbes. Due to the complex interactions in this so-called coral holobiont, it has proven difficult to understand the environmental limitations of productivity in corals. Among others, the micronutrient iron has been proposed to limit primary productivity due to its essential role in photosynthesis and bacterial processes. Here, we tested the effect of iron enrichment on the physiology of the coral Pocillopora verrucosa from the central Red Sea during a 12-day experiment. Contrary to previous reports, we did not see an increase in zooxanthellae population density or gross photosynthesis. Conversely, respiration rates were significantly increased, and microbial nitrogen fixation was significantly decreased. Taken together, our data suggest that iron is not a limiting factor of primary productivity in Red Sea corals. Rather, increased metabolic demands in response to iron enrichment, as evidenced by increased respiration rates, may reduce carbon (i.e., energy) availability in the coral holobiont, resulting in reduced microbial nitrogen fixation. This decrease in nitrogen supply in turn may exacerbate the limitation of other nutrients, creating a negative feedback loop. Thereby, our results highlight that the effects of iron enrichment appear to be strongly dependent on local environmental conditions and ultimately may depend on the availability of other nutrients.
Soil carbon, nitrogen, and phosphorus cycling microbial populations and their resistance to global change depend on C:N:P stoichiometry
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Data from: Assessing the effects of iron enrichment across holobiont compartments reveals reduced microbial nitrogen fixation in the Red Sea coral Pocillopora verrucosa
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Root influence on soil nitrogen availability and microbial community dynamics results in contrasting rhizosphere priming effects in pine and spruce soil
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Soil organic matter, total nitrogen and pH:Microbial composition and function across an old-field chronosequence
As mediators of biogeochemical cycles, understanding the ecological forces structuring soil microbial communities is of ecosystem-level significance. Due to gradual shifts in plant species composition and litter addition through time, succession can be used as a model to understand how plant communities shape microbial community composition and function in soil. Numerous studies have investigated microbial biomass and diversity along successional gradients, yet few have quantified changes in microbial communities. Using the established successional dynamics experiment at Cedar Creek, principal investigators Lauren C. Cline and Donald R. Zak investigated the influence of plant community composition in structuring microbial community composition and function. Specifically, their research addressed the following questions: 1. Do shifts in saprotrophic microbial communities correlate to changes in plant community composition through successional time? 2. What is the relative influence of soil properties and plant community characteristics in determining microbial community dynamics? Cline and Zak sampled soils from 8 established abandoned agricultural fields (e054), as well as three adjacent forests representing potential late-successional ecosystems, to investigate microbial dynamics using three complementary approaches: targeted sequencing of fungal and bacterial communities, quantitative PCR, and shotgun metagenomics. Further, the characterization of soil properties across the chronosequence will enable us to disentangle the impact of abiotic factors in structuring microbial communities.
Copiotrophic taxa in pig manure mitigate nitrogen limitation of soil microbial communities
<p>Dataset for soil properties, enzyme activities and stoichiometric parameters.</p>
Elevated CO2 and Nitrogen Supply Boost N Use Efficiency and Wheat Growth, and Differentiate Soil Microbial Communities Related to Ammonia-oxidization
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Elevated CO2 and Nitrogen Supply Boost N Use Efficiency and Wheat Growth, and Differentiate Soil Microbial Communities Related to Ammonia-oxidization
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Chapter 3. Contrasting methane, sulfide, and nitrogen loading regimes in bioreactors shape microbial communities originating from methane-rich coastal sediment of the Stockholm Archipelago
<p>Supplementary Tables 1 to 7.</p> <p> </p>
Data from: Grazing and nitrogen addition restructure the spatial heterogeneity of soil microbial community structure and enzymatic activities
<p>1. In grassland ecosystems, large herbivorous animal grazing activity and increasing nitrogen deposition strongly alters microbial community structure and function. Understanding the effects of grazing and nitrogen addition on the spatial heterogeneity in soil microbial community structure, enzymatic activities and the underlying mechanisms are crucial for making better predictions of soil organic matter dynamics and nutrient cycling. </p> <p>2. We examined the spatial heterogeneity of soil microbial community structure and enzymatic activity associated with changes in soil microclimate, soil characteristics, plant biomass and soil nutrient responses to grazing and nitrogen addition using a manipulative experiment with control (CK), grazing (G), nitrogen addition (N) and grazing plus nitrogen addition (NG) treatments in a <i>Leymus chinensis </i>meadow steppe, in northeastern China. </p> <p>3. The results demonstrated that soil microbial community structure and enzymatic activities showed a high level of spatial dependence [C/(C + C0)≥0.9] in the CK plot. G, N and NG treatments not only reduced the spatial variability ofsoil microbial community structure and enzymatic activities, but also reshaped the spatial links between enzymes activities and microbial community structure. Litter biomass, soil temperature and soil nutrients (soil dissolved inorganic nitrogen or soil dissolved organic carbon) explained 21-27% of the spatial variability of soil microbial community structure in the CK treatment and pH was the strongest driver for the spatial variability of soil enzymatic activities. Meanwhile, the homogenization in soil water content induced by the N addition treatment was a determinant of the reduction in spatial heterogeneity of the microbial community structure. The combination of soil physicochemical properties (bulk density, soil pH and soil dissolved inorganic nitrogen), soil temperature and root biomass explained 32-43% of the spatial variability of the microbial community structure in the G treatment, and N and G treatments had additive effects on the spatial heterogeneity of total PLFAs by homogenizing root biomass. Plant biomass and microbial community structure were the major drivers for the spatial heterogeneity of enzymatic activities under G, N and NG. In NG, the change in spatial variability of enzymatic activities was dominated by N addition. Regardless of grazing, N addition facilitated the spatial correlation between microbial community structure and enzyme activities. </p> <p>4. Overall, our results revealed the drivers of soil microbial community structure and enzymatic activities spatial pattern shift due to grazing and N addition, highlighting the role that spatial variability in soil microbial community structure and enzymatic activities has on the <i>L. chinensis</i> meadow steppe.</p>
Data from: Grazing and nitrogen addition restructure the spatial heterogeneity of soil microbial community structure and enzymatic activities
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Data from: Disentangling plant and soil microbial controls on carbon and nitrogen loss in grassland mesocosms
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A Compilation of Global Soil Microbial Biomass Carbon, Nitrogen, and Phosphorus Data
This data set provides the concentrations of soil microbial biomass carbon (C), nitrogen (N) and phosphorus (P), soil organic carbon, total nitrogen, and total phosphorus at biome and global scales. The data were compiled from a comprehensive survey of publications from the late 1970s to 2012 and include 3,422 data points from 315 papers. These data are from soil samples collected primarily at 0-15 cm depth with some from 0-30 cm. In addition, data were compiled for soil microbial biomass concentrations from soil profile samples to depths of 100 cm. Sampling site latitude and longitude were available for the majority of the samples that enabled assembling additional soil properties, site characteristics, vegetation distributions, biomes, and long-term climate data from several global sources of soil, land-cover, and climate data. These site attributes are included with the microbial biomass data. This data set contains two *.csv files of the soil microbial biomass C, N, P data. The first provides all compiled results emphasizing the full spatial extent of the data, while the second is a subset that provides only data from a series of profile samples emphasizing the vertical distribution of microbial biomass concentrations.There is a companion file, also in .csv format, of the references for the surveyed publications. A reference_number relates the data to the respective publication.The concentrations of soil microbial biomass, in combination with other soil databases, were used to estimate the global storage of soil microbial biomass C and N in 0-30 cm and 0-100 cm soil profiles. These storage estimates were combined with a spatial map of 12 major biomes (boreal forest, temperate coniferous forest, temperate broadleaf forest, tropical and subtropical forests, mixed forest, grassland, shrub, tundra, desert, natural wetland, cropland, and pasture) at 0.05-degree by 0.5-degree spatial resolution. The biome map and six estimates of C and N storage and C:N ration in soil microbial biomass are provided in a single netCDF format file.
Data from: Reconciling multiple impacts of nitrogen enrichment on soil carbon: plant, microbial, and geochemical controls
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Antagonistic interactive effects of CO2 and nitrogen on microbial community enhance the persistence of soil C storage
GEO Series GSE98512. Bacteria; Eukaryota; Viruses; soil metagenome; Archaea. 296 samples. Type: Other.
Nitrogen source-driven regulation of Irpex lacteus for enhanced lignocellulose degradation and microbial protein production in wheat straw
GEO Series GSE297384. Irpex lacteus. 9 samples. Type: Expression profiling by high throughput sequencing.
Organic matter loading modifies the microbial community responsible for nitrogen loss in estuarine sediments
GEO Series GSE65430. synthetic construct; aquatic metagenome. 4 samples. Type: Other.
Differential effects of nitrogen addition on soil organic carbon decomposition correlate with changes in microbial C-degradation functional potentials in a Pinus tabulaeformis forest
GEO Series GSE147041. uncultured soil microorganism; Bacteria; Eukaryota; Viruses; Archaea. 16 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.