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Fig. 1. Circular Bayesian tree inferred from mtDNA cox-2 in Temporal stability of parasite distribution and genetic variability values of Contracaecum osculatum sp. D and C. osculatum sp. E (Nematoda: Anisakidae) from fish of the Ross Sea (Antarctica)
Fig. 1. Circular Bayesian tree inferred from mtDNA cox-2 sequences obtained from specimens of C. osculatum sp. D and C. osculatum sp. E analysed in the present study, based on Bayesian Inference (BI) method using MrBayes v3.2.2 (Ronquist et al., 2012). Evolutionary distance was estimated using the TrN + G (G = 0.60) substitution model as implemented in jModeltest (Posada, 2008), with the AIC approach (Posada and Buckley, 2004). Posterior probability values are the result of 1.000000 of runs and are reported at the nodes. The coloured icons correspond to the two species considered in this study (red = C. osculatum sp. D and blue = C. osculatum sp. E).
Fig. 2. Minimum spanning network for haemosporidian mtDNA cytochrome b in Haemosporidian parasite infections in grouse and ptarmigan: Prevalence and genetic diversity of blood parasites in resident Alaskan birds
Fig. 2. Minimum spanning network for haemosporidian mtDNA cytochrome b haplotypes isolated from Alaskan grouse and ptarmigan species. Dark circles represent un-sampled nodes. All circles are proportional to the frequency at which the haplotypes were detected. Lines between nodes are drawn to scale based on the number of nucleotide mutations unless otherwise indicated by hash marks.
Рис. 1. ФиΛогенетические Αеревья хантавируса AMRV и его прироΑного носитеΛя восточноазиатской мыши Apodemus peninsulae Thomas, 1906. А. ФиΛогенетическое Αерево восточноазиатской мыши Apodemus peninsulae, построенное метоΑом «максимаΛьного правΑопоΑобия» (ML) и поΛученное на основе анаΛиза участка гена цитохрома b мтΔНК (744 п.н.). В узΛах ветвΛения указаны бутстреп-поΑΑержки, рассчитанные ΑΛя 1000 повторов. Цветными Λиниями обозначены фиΛогенетические Λинии: Αве Китайские (зеΛеный), Корейская «Korea» (синий), Амурская «Amur» (красный). ПоΛужирным шрифтом выΑеΛены собственные образцы. Названия образцов из GenBank/NCBI быΛи сокращены; B. ФиΛогенетическое Αерево из работы Α. Н. Яшиной с ΑопоΛнениями, построенное метоΑом «бΛижайшего сосеΑа» (NJ) на основе посΛеΑоватеΛьностей фрагмента М-сегмента (2737–2980 н.п.) генома хантавирусов. В узΛах ветвΛения указаны бутстреппоΑΑержки, рассчитанные ΑΛя 1000 повторов. Жирным выΑеΛены иссΛеΑованные РНК изоΛяты (Яшина 2012; Яшина и Αр. 2019) Fig. 1. Phylogenetic trees of AMRV and its natural reservoir host — the Korean field mouse Apodemus peninsulae Thomas, 1906. A. Phylogenetic tree of the Korean field mouse Apodemus peninsulae constructed by the "maximum likelihood" method (ML). The data are obtained from the analysis of the cytochrome b mtDNA gene fragments (744 bp). Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. Colored lines indicate phylogenetic lines: two Chinese (green), Korea (blue), and Amur (red). Own samples are highlighted in bold. The names of the samples from GenBank/NCBI have been shortened; B. Phylogenetic tree from L. N. Yashina's work with additions constructed by the neighbour joining method (NJ). It is based on the sequences of an M-segment fragment (2737–2980 bp) of the hantavirus genome. Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. The researched RNA isolates are highlighted in bold (Yashina 2012; Yashina et al. 2019) in Variability of the gene cyt b in the Korean field mouse Apodemus peninsulae Thomas, 1906 - a reservoir host of AMRV in the Khasansky District of Primorsky Krai
Рис. 1. ФиΛогенетические Αеревья хантавируса AMRV и его прироΑного носитеΛя восточноазиатской мыши Apodemus peninsulae Thomas, 1906. А. ФиΛогенетическое Αерево восточноазиатской мыши Apodemus peninsulae, построенное метоΑом «максимаΛьного правΑопоΑобия» (ML) и поΛученное на основе анаΛиза участка гена цитохрома b мтΔНК (744 п.н.). В узΛах ветвΛения указаны бутстреп-поΑΑержки, рассчитанные ΑΛя 1000 повторов. Цветными Λиниями обозначены фиΛогенетические Λинии: Αве Китайские (зеΛеный), Корейская «Korea» (синий), Амурская «Amur» (красный). ПоΛужирным шрифтом выΑеΛены собственные образцы. Названия образцов из GenBank/NCBI быΛи сокращены; B. ФиΛогенетическое Αерево из работы Α. Н. Яшиной с ΑопоΛнениями, построенное метоΑом «бΛижайшего сосеΑа» (NJ) на основе посΛеΑоватеΛьностей фрагмента М-сегмента (2737–2980 н.п.) генома хантавирусов. В узΛах ветвΛения указаны бутстреппоΑΑержки, рассчитанные ΑΛя 1000 повторов. Жирным выΑеΛены иссΛеΑованные РНК изоΛяты (Яшина 2012; Яшина и Αр. 2019) Fig. 1. Phylogenetic trees of AMRV and its natural reservoir host — the Korean field mouse Apodemus peninsulae Thomas, 1906. A. Phylogenetic tree of the Korean field mouse Apodemus peninsulae constructed by the "maximum likelihood" method (ML). The data are obtained from the analysis of the cytochrome b mtDNA gene fragments (744 bp). Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. Colored lines indicate phylogenetic lines: two Chinese (green), Korea (blue), and Amur (red). Own samples are highlighted in bold. The names of the samples from GenBank/NCBI have been shortened; B. Phylogenetic tree from L. N. Yashina's work with additions constructed by the neighbour joining method (NJ). It is based on the sequences of an M-segment fragment (2737–2980 bp) of the hantavirus genome. Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. The researched RNA isolates are highlighted in bold (Yashina 2012; Yashina et al. 2019)
Fig. 3 Phylogenetic relationships among the 16 mtDNA haplotypes observed. a in Unveiling cryptic diversity among Müllerian co-mimics: insights from the Western Palaearctic Syntomis moths (Lepidoptera: Erebidae: Arctiinae)
Fig. 3 Phylogenetic relationships among the 16 mtDNA haplotypes observed. a Maximum likelihood tree retrieved by the analysis in IQTREE; support values at the relevant nodes are SH-aLRT support (%) and standard bootstrap support (%) based on 1000 replicates. b Maximum clade credibility tree recovered by the Bayesian analysis in BEAST, showing the divergence time from the most recent common
Text-fig. 4. Electrophoresis after amplification: Electrophoretical analysis of mitochondrial DNA. mtDNA sequences were amplified by primers F15.412 and R16.169 (450 bp), R16.269 (550 bp), R16.519 (800 bp). Lane 1 are primers F15.412 + R16.169, lane 2 primers F15.412 + R16.269, lane 3 primers F15.412 + R16.519, NC – negative control – water, L – 100 bp DNA ladder (band size from 100 bp to 1500 bp). in Genetic Analysis Of Possibly The Oldest Greyhound Remains Within The Territory Of The Czech Republic As Proof Of A Local Elite Presence At Chotěbuz-Podobora Hillfort In The 8 -9 Century Ad
Text-fig. 4. Electrophoresis after amplification: Electrophoretical analysis of mitochondrial DNA. mtDNA sequences were amplified by primers F15.412 and R16.169 (450 bp), R16.269 (550 bp), R16.519 (800 bp). Lane 1 are primers F15.412 + R16.169, lane 2 primers F15.412 + R16.269, lane 3 primers F15.412 + R16.519, NC – negative control – water, L – 100 bp DNA ladder (band size from 100 bp to 1500 bp).
Text-fig. 5. Multiple sequence alignment of mtDNA from ancient bone and recent greyhound, (Gundry et al. 2007) primer pair A – F15.719 and R16.114. in Genetic Analysis Of Possibly The Oldest Greyhound Remains Within The Territory Of The Czech Republic As Proof Of A Local Elite Presence At Chotěbuz-Podobora Hillfort In The 8 -9 Century Ad
Text-fig. 5. Multiple sequence alignment of mtDNA from ancient bone and recent greyhound, (Gundry et al. 2007) primer pair A – F15.719 and R16.114.
Figure 3 in Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP
Figure 3. Restriction patterns of HinfI inferred from D-loop digestion (M: Marker–100bp DNA Ladder, 1. Ordu, 2. Trabzon, 3. Rize, 4. Artvin, 5–6. Erzincan, 7–8. Kahramanmaraş, 9. Adıyaman, 10–11. Adana, 12. Muğla, 13. Burdur, 14. Konya, 15. Antalya, 16. Mersin, 17. Kastamonu, 18. Zonguldak, 19. Düzce, 20. Balıkesir, 21. İzmir, 22. Aydın, 23. A. uralensis, 24. A. witherbyi, 25. D-loop PCR products).
Figure 2 in Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP
Figure 2. Restriction patterns of MboI, HaeIII, and RsaI inferred from cytb digestion (M: Marker–100bp DNA Ladder, 1. Ordu, 2. Trabzon, 3. Rize, 4. Artvin, 5. Erzincan, 6. Kahramanmaraş, 7. Adıyaman, 8. Adana, 9. Muğla, 10. Burdur, 11. Konya, 12. Antalya, 13. Mersin, 14. Kastamonu, 15. Zonguldak, 16. Düzce, 17. Balıkesir, 18. İzmir, 19. Aydın, 20. A. uralensis, 21. A. witherbyi, 22. Cytb PCR product).
Figure 5 in Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP
Figure 5. PCoA analysis of A. mystacinus clades. The scatter plot is of the scores of three principal eigenvalues inferred from NTSYS software. Each scatter point represents a specimen of A. mystacinus.
Figure 1 in Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP
Figure 1. Sampling localities of A. mystacinus specimens. Table 2. Restriction enzymes and their digestion sites with reaction procedures.
Figure S1 in mtDNA diversity in a rabbit population from Sicily (Italy)
Figure S1. Multiple sequence alignment of Oryctolagus cuniculus cyt b mtDNA from different individuals. GenBank accession numbers are indicated in Table 1. The single enzyme restriction sites are highlighted in colors/gray.
Figure S2 in mtDNA diversity in a rabbit population from Sicily (Italy)
Figure S2. Shading of the multiple alignment of Oryctolagus cuniculus cyt b mtDNA sequences from different individuals shown in Figure S1. Identical nucleotides are indicated.
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I in Phylogenetic relationship among slender loris species (Primates, Lorisidae: Loris) in Sri Lanka based on mtDNA CO1 barcoding
Figure 1. A neighbour-joining tree using 604 cytochrome C oxidase sub-unit I (CO1) sequences from 7 different slender loris (Loris) taxas, rooted using slow loris (Nycticebus) sequences deposited in the GenBank.
Figure 2 in MtDNA D-loop genetic diversity of common quail (Coturnix coturnix) migrating through Ukraine and Spain
Figure 2. Midpoint rooted neighbor-joining phylogenetic tree of common quail based on the D-loop haplotypes (H1–H30) identified in this study. Figures indicate bootstrap support values higher than 50%. Abbreviations WU, CU, and NS represent the same sampling areas as in Figure 1.
Figure 1 in MtDNA D-loop genetic diversity of common quail (Coturnix coturnix) migrating through Ukraine and Spain
Figure 1. Median-joining network of common quail mtDNA D-loop haplotypes. The circle area is proportional to the haplotype frequency. Dashes indicate mutational steps. Colors and patterns within circles show the relative frequency of sequences from western Ukraine (WU), central Ukraine (CU), and northern Spain (NS).
Figure 16 in Daphniola Radoman, 1973 (Gastropoda: Hydrobiidae): shell biometry, mtDNA, and the Pliocene flooding
Figure 16. The geography of the Mediterranean in the Late Miocene (Messinian salinity crisis; after Banarescu 1992) and the localities of the studied populations in the Recent.
Figures 2–13 in Daphniola Radoman, 1973 (Gastropoda: Hydrobiidae): shell biometry, mtDNA, and the Pliocene flooding
Figures 2–13. Shells of Daphniola. (2–6) D. exigua, Agia Paraskevi. (7–10) D. louisi, Kessariani. (11–13) D. graeca, Daphne spring. Scale bar: 0.5 mm
Figure 1 in Daphniola Radoman, 1973 (Gastropoda: Hydrobiidae): shell biometry, mtDNA, and the Pliocene flooding
Figure 1. Shell morphometry measurements: a, height of shell; b, width of body whorl; c, height of mouth; d, height of spire; e, width of mouth; 2, angle of spire.
Figure 15 in Daphniola Radoman, 1973 (Gastropoda: Hydrobiidae): shell biometry, mtDNA, and the Pliocene flooding
Figure 15. Phylogram computed with maximum likelihood, Grossuana codreanui and Bythinella austriaca as outgroup; bootstrap supports (10,000 replicates) given for all branches whose support exceeded 50%.
Hybrid lizards with introgressed mtDNA show increased resistance to DNA damage from Reactive Oxygen Species
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