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71 results for “multi-gene phylogeny”
Figure 6 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure 6 Micro-morphological features of C. globosum (HKAS 52741). A Basidiospores B Basidia C Cheilocystidia D Elements of squamules on pileus. Scale bars: 10 μm (A, D); 20 μm (B, C).
Figure 5 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure 5 Micro-morphological features of C. palaeotropicum (PREM 62142, type). A Basidiospores B Basidia C Cheilocystidia D Elements of squamules on pileus. Scale bars: 10 μm (A, D); 20 μm (B, C).
Figure 3 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure 3 Basidiocarps of representative species of Chlorophyllum. A Chlorophyllum africanum (PREM 62141) B Chlorophyllum demangei (HKAS 89157) C Chlorophyllum globosum (PREM 62152) D Chlorophyllum palaeotropicum (HKAS 60195).
Figure 1 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure 1 ML tree inferred from ITS data. Bootstrap values >50 % are indicated at internodes. Names of new taxa are in bold.
Figure 4 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure 4 Micro-morphological features of C. africanum (PREM 62143, type). A Basidiospores B Basidia C Cheilocystidia D Elements of squamules on pileus. Scale bars: 10 μm (A, D); 20 μm (B, C).
Figure 2 from: Ge Z-W, Jacobs A, Vellinga EC, Sysouphanthong P, van der Walt R, Lavorato C, An Y-F, Yang ZL (2018) A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification. MycoKeys 32: 65-90. https://doi.org/10.3897/mycokeys.32.23831
Figure 2 ML tree inferred from the combined alignment based on ITS, nrLSU, rpb2 and tef1. Bootstrap values >50 % are indicated at internodes. Names of new taxa are shown in bold.
Supplementary material 1 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
: Data type: (phylogenetic trees/neighbour nets)
Figure 9 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 9 Morphological features of P.alobata, mounted in KOH and macroscopically. A, B basidiospores in frontal face (O F110315) C, D in lateral face (O F110316) E subicular hyphae (TU 115626) F mature basidiome (holotype).
Figure 8 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 8 Micromorphological features of P.alnophila in KOH. Holotype: A, B, C basidiospores in frontal face D, E in lateral face E subicular hyphae.
Figure 6 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 6 World distribution of new and previously described species in the P.tristis group, excluding doubtful taxa. Red – P.umbrina; pink – P.tristoides; dark green – P.sciastra; pale green – P.atrofusca; dark blue – P.tristis; pale blue – P.media; orange – P.pinophila; yellow – P.rotundispora; grey – P.alobata; black – P.abundiloba; brown – P.umbrinascens; turquoise – P.alnophila; purple – P.pluriloba.
Figure 4 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 4 ASTRAL species tree of the P.tristis group. Numbers between 0.5 and 1 denote local posterior probability values (only values > 0.5 are shown). The internal branch lengths are scaled in coalescent units, while the length of the terminal branches is a standard value set by the programme.
Figure 5 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 5 Nuclear ribosomal DNA phylogeny of the P.tristisgroup. ML phylogram with bootstrap support values (only values > 50 are shown), and posterior probability values added from congruent Bayesian tree (only values > 0.7 are shown). Branch lengths are scaled in substitutions/site.
Figure 3 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 3 Pairwise similarity matrix between the clusters of the STACEY species tree. The species are colour-coded the same as in Fig. 2. Values between 0 and 1 denote posterior probability.
Figure 7 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 7 Micromorphological features of P.abundiloba in KOH. A, B basidiospores in frontal face (TU 110852) C in tilted frontal face (TU 110852) D, E in lateral face (TU 110852) F subicular hyphae (holotype).
Figure 2 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 2 STACEY species tree of the P.tristis group. Numbers at nodes denote posterior probability values (only values > 0.70 are shown). The branch lengths are scaled in estimated number of substitutions/site.
Figure 21 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 21 Micromorphological features of H.rhacodium in KOH. Syntype: A, B basidiospores in frontal face C, D in lateral face E subicular hyphae with granulation and F without.
Figure 19 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 19 Micromorphological features of P.umbrinascens in KOH. Holotype: A, B, C basidiospores in frontal face D, E in lateral face E subicular hyphae.
Figure 18 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 18 Morphological features of P.umbrina, mounted in KOH and macroscopically. A (O F110268) B (epitype) C (epitype) basidiospores in frontal face D, E in lateral face (epitype) F subicular hyphae (epitype) G (epitype) H (SS174) mature basidiomata.
Figure 20 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 20 Micromorphological features of P.longisterigmata in KOH. Holotype: A, B, C basidiospores in frontal face D in lateral face E basidia F subicular hyphae.
Figure 16 from: Svantesson S, Larsson K-H, Kõljalg U, May TW, Cangren P, Nilsson RH, Larsson E (2019) Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) – a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. MycoKeys 50: 1-77. https://doi.org/10.3897/mycokeys.50.32432
Figure 16 Morphological features of P.tristis, mounted in KOH and macroscopically. A (LK54/13) B (lectotype) C (epitype), basidiospores in frontal face D (epitype) E (TAA 159485) in lateral face F subicular hyphae (epitype) G young basidiome (TU 115439) H mature basidiome (TU 115642).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.