Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
50
datasets available to search
ShareScore release 0.9.0
Dataset results
50 results for “mycobacterium abscessus”
High-throughput small RNA-sequencing of human macrophages infected with Mycobacterium abscessus Smooth and Rough variants
GEO Series GSE72769. Homo sapiens. 25 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Lsr2, a pleiotropic regulator at the core of the infectious strategy of Mycobacterium abscessus [RNA-seq]
GEO Series GSE239869. Mycobacteroides abscessus. 12 samples. Type: Expression profiling by high throughput sequencing.
Defining the mechanisms-of-action of nitrofuranyl piperazines against Mycobacterium abscessus
GEO Series GSE287881. Mycobacterium tuberculosis CDC1551; Mycobacteroides abscessus ATCC 19977. 10 samples. Type: Expression profiling by high throughput sequencing.
PK and PD of Antibiotics for Treatment of Mycobacterium Abscessus Pulmonary Disease
ClinicalTrials.gov study NCT05676138. IPD Sharing: UNDECIDED. Countries: 0. Publications: 0.
Lsr2, a pleiotropic regulator at the core of the infectious strategy of Mycobacterium abscessus
GEO Series GSE239871. Mycobacteroides abscessus. 22 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Transcriptome profiles of macrophages upon infection by isogenic phenotypic variants of Mycobacterium abscessus
GEO Series GSE221966. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Spectral database of the subspecies of the Mycobacterium abscessus complex (MALDI-TOF Mass Spectrometry)
<p><strong>Spectral database of the subspecies of the Mycobacterium abscessus complex (MALDI-TOF Mass Spectrometry)</strong></p> <ul> <li>This data set originates from a collection of 41 clinical strains of <em>Mycobacterium abscessus complex</em> corresponding to 1001 mass spectra: <ul> <li>25 strains of <em>Mycobacterium abscessus</em> subsp. <em>abscessus</em> (633 mass spectra)</li> <li>9 strains of <em>Mycobacterium abscessus</em> subsp. <em>massiliense</em> (204 mass spectra)</li> <li>7 strains of <em>Mycobacterium abscessus</em> subsp. <em>bolletii </em>(164 mass spectra)</li> </ul> </li> </ul> <p> </p> <ul> <li>Each strain has been characterized using molecular method (DNA/DNA hydridation, using GenoType NTM-DR (Hain Lifescience, Nehren, Germany) according to the manufacturer's instructions for identification and analyzed by MALDI-TOF mass spectrometry according MycoEx protocol (Bruker<sup>®</sup>). The mass spectra spectra were obtained according to the following steps :</li> </ul> <p> </p> <ol> <li>Each of the 41 strains was cultured in aerobic atmosphere at 37°C for 7 ± 2 days on blood agar (COH, bioMerieux<sup>®</sup>). Then, one colony was extracted according to the MycoEx protocol (Bruker<sup>®</sup>). For each of the extracts, 8 technical replicates were realized and analyzed by MALDITOF MS (Bruker<sup>®</sup>). Dried spots were overlaid with 1µL of MALDI matrix (α-HCCA).</li> <li> <p>Data acquisition was performed using a Microflex LT (Bruker<sup>®</sup> Daltonics) mass spectrometer equipped with a N2 laser (λ =377 nm). Instrument parameters used were as follows: a masse range between 200-20000 Da, ion source 1: 20 kV, ion source 2: 18.5 kV, Iens: 8.45 kV, pulsed ion extraction: 330 ns, laser frequency: 20.0 Hz. Spectra were obtained after 500 shots. Each spot was analyzed three times. In total 24 spectra were obtained for each extraction.</p> </li> <li> <p>Spectra acquired for each isolate were visualized and analyzed using Flex Analysis software (Bruker<sup>®</sup> Daltonics), and spectra with low quality peaks were removed. A minimum of 15 spectra per extraction was necessary to validate the extraction.</p> </li> </ol> <p><strong>This database is only intended for medical research. Please contact: medecine-drv@sorbonne-universite.fr for data access.</strong></p> <p>After access agreement, the three following files will be available :</p> <ul> <li>The MABSC_spectra.zip file contains the MS peak list data in a Matlab compatible format.</li> <li>The MABSC_metadata.pdf file contains the molecular identifications of strains.</li> <li>The MABSC_notes.txt file contains informations concerning contains informations on the method of obtaining the data.</li> </ul>
Therapeutic efficacy of antimalarial drugs targeting DosRS signaling in Mycobacterium abscessus
GEO Series GSE174310. Mycobacteroides abscessus ATCC 19977. 8 samples. Type: Expression profiling by high throughput sequencing.
Mycobacterium abscessus HelR interacts with RNA Polymerase to confer intrinsic rifamycin resistance
GEO Series GSE201201. Mycobacteroides abscessus. 4 samples. Type: Expression profiling by high throughput sequencing.
Mycobacterium abscessus -bronchial epithelial cells cross-talk through Type I interferon signaling
GEO Series GSE140439. Mus musculus; Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.