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105 results for “natural resources”
Data from: Supplementation of seasonal natural resources with year-round anthropogenic resources by coyotes in natural fragments within a high-density urban area
<p>Coyotes (<em>Canis latrans</em>) in urban landscapes provide important food web functions and ecological services but can also trigger human-wildlife conflict when their diet includes anthropogenic resources or domestic pets. As adaptable omnivores, coyotes adjust their diet to their environment, routinely switching among food items to accommodate spatial and seasonal differences in availability. To evaluate coyotes' potential impacts within the food web of urban Long Beach, California where human-wildlife conflict involving coyotes may occur, we analyzed 115 scat samples collected once every two weeks from two open space fragments inside the urban matrix. We hypothesized that differences in scat composition would correlate with seasonal and site differences, with greater use of anthropogenic resources during the dry season supplementing lower prey availability, and greater consumption of wild mammal prey during the wet season when rabbits and small mammals reproduce. We found coyote diet was predominately composed of natural prey and vegetation year-round. Mammals made up more of the coyote diet in the wet season than the dry, while arthropods and vegetation occurred more in dry season scats. Coyotes relied on rabbits as their main prey year-round across all sites. Domestic cats (<em>Felis catus</em>) were the third most common individual prey species found in coyote scats; we did not find evidence of domestic dog (<em>Canis lupus familiaris</em>) consumption. The overall frequency of mammalian remains did not differ across sites but did differ across sites for other prey types. While there is a potential for human-wildlife conflict in coyote's consumption of feral or domestic cats, coyotes may also be providing an ecological service by reducing cats in natural habitat fragments.</p>
Fruit orchards and woody semi-natural habitat provide complementary resources for pollinators in agricultural landscapes
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Foraging in nature: contrasting responses to resource heterogeneity at small and large spatial scales.
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Data from: Supplementation of seasonal natural resources with year-round anthropogenic resources by coyotes in natural fragments within a high-density urban area
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Natural selection favours drought escape and an acquisitive resource‐use strategy in semi‐arid Mediterranean shrubs
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Wisconsin Department Natural Resources Historical Lake Level Data from 1918 to 2000 in Wisconsin
The lake level data collected by Wisconsin Department of Natural Resources. It covers 751 lakes. The time span is from 1918 to 2000. Historically, the Wisconsin Department of Natural Resources surveyed lake level elevations over time in many lakes across the state. The date and lake level were recorded on paper and filed by lake and county. Associated materials for each lake include detailed descriptions, maps, and survey elevations for benchmarks. The full set of files are stored on the fourth floor of the GEF2 building in downtown Madison.
Ohio Department of Natural Resources, Division of Wildlife, Reservoir Productivity Assessment Water Chemistry 2006-2007
Limnological data provided represent information collected during 2006–2007 for a total of 153 reservoirs. Some reservoirs were sampled in a single year, others were sampled in both years. Nearly all reservoirs were sampled during July or August near the dam at the deepest part of the reservoir. Additional samples for particular systems were taken in other months and at other sites (i.e., near the inflow). Many samples have complete Secchi transparencies, suspended solids (both total and non-volatile suspended solids), total phosphorus, total nitrogen, and chlorophyll a concentrations. Others are missing various parameters; some samples are represented by only a Secchi transparency measurement. Morphometric data and landuse/land cover data are provided for those systems where it had been previously compiled. All 153 reservoirs are represented in the provided lake shapefile whereas only 117 were included in the watershed shapefile. ' Over a 2-year period (2006 and 2007) we sampled 109 reservoirs (all Ohio reservoiurs > 10 ha), located throughout Ohio, USA, whose watersheds contain a variety of land cover types and a wide range of eutrophication levels. All reservoirs were sampled at least once during July or August in 2006 or 2007. … a subset of 34 of these reservoirs were sampled once in both 2006 and 2007. In addition, 10 reservoirs (“reference reservoirs”) were sampled at least once per month during July and August of both 2006 and 2007. Lakes were sampled by Miami personnel and DOW field crews (Districu3, District 4, and District 5).’
Minnesota Department of Natural Resources Sentinel Lakes Monitoring Program Chemistry, 2008-2011
SLICE (Sustaining Lakes in a Changing Environment) is a cooperative long-term, statewide lake monitoring program led by DNR Fisheries with the support of many other partners. The focus of this interdisciplinary effort is to improve understanding of how major drivers of change such as development, agriculture, climate change, and invasive species can affect lake habitats and fish populations, and to develop a long-term strategy to collect the necessary information to detect undesirable changes in Minnesota lakes.
Pre-trained models for Vietnamese Natural Resources and Environment Domain
<p>Two Pre-trained models for Vietnamese Natural Resources and Environment Domain:</p> <p>- fastText</p> <p>- Word2vec</p>
Vietnamese text datasets for domain of natural resources and environment
<p>Two vietnamese text datasets have been crawlered and pre-processed for domain of natural resources and environment.</p> <p>These text datasets crawlered ( in domain of natural resources and environment) from:</p> <p>- Wikimedia.</p> <p>- Articles from 03 Journals</p> <p>- 19.666 legal documents</p> <p>- 2.637 scientific reports</p> <p>- 1.434 technical standard documents</p> <p>vnNREDataset2020 dataset: in CoNLL format (included Vietnamese NER labels using VnCoreNLP)</p> <p>vnNREsentences2020 dataset: 2.421.138 sentences (word segmented using VnCoreNLP)</p>
Raw data from: Consumer-resource interactions along urbanization gradients drive natural selection
<p>Urbanization is an important component of global change. Urbanization affects species interactions, but the evolutionary implications are rarely studied. We investigate the evolutionary consequences of a common pattern: the loss of high trophic-level species in urban areas. Using a gall-forming fly, Eurosta solidaginis, and its natural enemies that select for opposite gall sizes, we test for patterns of enemy loss, selection, and local adaptation along five urbanization gradients. Eurosta declined in urban areas, as did predation by birds, which preferentially consume gallmakers that induce large galls. These declines were linked to changes in habitat availability, namely reduced forest cover in urban areas. Conversely, a parasitoid which attacks gallmakers that induce small galls was unaffected by urbanization. Changes in patterns of attack by birds and parasitoids resulted in stronger directional selection, but loss of stabilizing selection in urban areas, a pattern which we suggest may be general. Despite divergent selective regimes, gall size did not very systematically with urbanization, suggesting but not conclusively demonstrating that environmental differences, gene flow, or drift, may have prevented the adaptive divergence of phenotypes. We argue that the evolutionary effects of urbanization will have predictable consequences for patterns of species interactions and natural selection.</p>
Ant foraging strategies vary along a natural resource gradient
Food selection by foragers is sensitive to the availability of resources, which may vary along geographical gradients. Hence, selectivity of food types by foragers is expected to track these resource gradients. Here we addressed this hypothesis and asked if foraging decisions of seed-eating ants differ along a geographic gradient of habitat productivity. The study was carried out for two years at five sites along a natural climatic gradient, ranging from arid to Mediterranean, where plant productivity varies 6-fold across a short geographic distance of 250 km. We found that in ant colonies of the genus Messor, collective foraging decisions differed along the gradient. Specifically, at the high-productivity sites, a stronger association was found between plant seed availability and selectivity, suggesting that colonies respond more accurately to within-patch variation in food amounts. In contrast, colonies in low-productivity sites foraged in patches with higher concentration of seeds, suggesting that they respond more accurately to among-patch variation in food amounts. Moreover, at the high-productivity sites, colonies were more discriminating in their choice of food and preferred bigger seeds, while in the low-productivity sites, where smaller seeds were relatively more abundant, food collection depended mostly on seed availability. An experiment with artificial seed patches performed along the same climatic gradient, revealed no difference in food selectivity across sites when food type and availability were similar, and a general preference for bigger over medium-sized seeds. Overall, our findings suggest that resource availability is an important factor explaining food choice along a climatic gradient and imply that in low-productivity regions small-seeded species incur high predation pressure, whereas in high-productivity regions, large-seeded species suffer higher predation. This could have important consequences for plant species composition, particularly at the face of climate change, which could dramatically alter the foraging decisions of granivores.
Data from: Genetic resources of teak (Tectona grandis Linn. f.) – strong genetic structure among natural populations
Twenty-nine provenances of teak (Tectona grandis Linn. f.) representing the full natural distribution range of the species were genotyped with microsatellite DNA markers to analyse genetic diversity and population genetic structure. Provenances originating from the semi-moist east coast of India had the highest genetic diversity while provenances from Laos showed the lowest. In the eastern part of the natural distribution area, comprising Myanmar, Thailand and Laos, there was a strong clinal decrease in genetic diversity the further east the provenance was located. Overall, the pattern of genetic diversity supports the hypothesis that teak has its centre of origin in India, from where it spread eastwards. The analysis of molecular variance (AMOVA) gave an overall highly significant F st value of 0.227—population pairwise F st values were in the range 0.01–0.48. Applying the G″st differentiation parameter, the estimated overall differentiation was 0.632, implying a strong genetic structure among populations. A neighbour-joining (NJ) tree, using the pairwise population matrix of G″st values as input, contained three distinct groups: (1) the eight provenances from Thailand and Laos, (2) the Indian provenances from the dry interior and the moist west coast and (3) the provenances from northern Myanmar. The provenances from southern Myanmar were placed close to the root of the tree together with the three provenances from the semi-moist east coast of India. A Bayesian cluster analysis using the STRUCTURE software gave very similar results, with three main clusters, each containing two sub-clusters, while Bayesian cluster analysis in the Geneland software, exploiting the spatial coordinates of the provenances, resulted in five clusters in accordance with the former results. The implications of the findings for conservation and use of genetic resources of the species are discussed.
Data from: Value of information in natural resource management: technical developments and application to pink-footed geese
The "value of information" (VOI) is a generic term for the increase in value resulting from better information to guide management, or alternatively, the value foregone under uncertainty about the impacts of management (Yokota and Thompson, Medical Decision Making 2004; 24: 287). The value of information can be characterized in terms of several metrics, including the expected value of perfect information and the expected value of partial information. We extend the technical framework for the value of information by further developing the relationship between value metrics for partial and perfect information and describing patterns of their performance. We use two different expressions for the expected value of partial information to highlight its relationship to the expected value of perfect information. We also develop the expected value of partial information for hierarchical uncertainties. We highlight patterns in the value of information for the Svalbard population of the pink-footed goose (Anser brachyrhynchus), a population that is subject to uncertainty in both reproduction and survival functions. The framework for valuing information is seen as having widespread potential in resource decision making, and serves as a motivation for resource monitoring, assessment, and collaboration.
Data from: Flower resource and land management drives hoverfly communities and bee abundance in semi-natural and agricultural grasslands
1. Pollination is a key ecosystem service, and appropriate management, particularly in agricultural systems, is essential to maintain a diversity of pollinator guilds. However, management recommendations frequently focus on maintaining plant communities, with the assumption that associated invertebrate populations will be sustained. 2. We tested whether plant community, flower resources and soil moisture would influence hoverfly (Syrphidae) abundance and species richness in floristically-rich semi-natural and floristically-impoverished agricultural grassland communities in Wales (U.K.), and compared these to two Hymenoptera genera, Bombus and Lasioglossum. Interactions between environmental variables were tested using generalised linear modelling, and hoverfly community composition examined using canonical correspondence analysis. 3. There was no difference in hoverfly abundance, species richness, or bee abundance, between grassland types. There was a positive association between hoverfly abundance, species richness and flower abundance in unimproved grasslands. However, this was not evident in agriculturally improved grassland, possibly reflecting intrinsically low flower resource in these habitats, or the presence of plant species with low or relatively inaccessible nectar resources. There was no association between soil moisture content and hoverfly abundance or species richness. 4. Hoverfly community composition was influenced by agricultural improvement and the amount of flower resource. Hoverfly species with semi-aquatic larvae were associated with both semi-natural and agricultural wet grasslands, possibly because of localised larval habitat. Despite the absence of differences in hoverfly abundance and species-richness, distinct hoverfly communities are associated with marshy grasslands, agriculturally improved marshy grasslands and unimproved dry grasslands, but not with improved dry grasslands. 5. Grassland plant community cannot be used as a proxy for pollinator community. Management of grasslands should aim to maximise the pollinator feeding resource, as well as maintain plant communities. Retaining waterlogged ground may enhance the number of hoverflies with semi-aquatic larvae.
Data from: "De novo assembly transcriptome for the rostrum dace (Leuciscus burdigalensis, Cyprinidae: fish) naturally infected by a copepod ectoparasite" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015
The emergence of pathogens represents substantial threats to public health, livestock, domesticated animals, and biodiversity. How wild populations respond to emerging pathogens has generated a lot of interest in the last two decades. With the recent advent of high-throughput sequencing technologies it is now possible to develop large transcriptomic resources for non-model organisms, hence allowing new research avenues on the immune responses of hosts from a large taxonomic spectra. We here focused on a wild population of the rostrum dace (Leuciscus burgiladensis) that is infected by Tracheliastes polycolpus, an emerging freshwater ectoparasite copepod. We used next generation Illumina sequencing technology to sequence the transcriptome of eight L. burdigalensis adult individuals collected in natura from the same sampling site. Four individuals were non-infected and four individuals were infected by T. polycolpus. We specifically focused on the spleen, the head kidney and epithelial cells and mucus from the fins, three tissues known to be involved in the immune response of fish. We used the Trinity methodology to reconstruct a de novo full-length transcriptome for L. burdigalensis. The resulting transcriptome will serve as an important broad-scale genomic resource for further studying the response of local population of L. burdigalensis to T. polycolpus pressures.
Data from: Combined effects of natural enemies and competition for resources on a forest defoliator: a theoretical and empirical analysis
Explanations for the dynamics of insect outbreaks often focus on natural enemies, on the grounds that parasitoid and pathogen attack rates are high during outbreaks. While natural enemy models can successfully reproduce outbreak cycles, experiments have repeatedly demonstrated the importance of resource quality and abundance. Experiments, however, are rarely invoked in modeling studies. Here we combine mechanistic models, observational data, and field experiments to quantify the roles of parasitoid attacks and resource competition on the jack pine budworm, Choristoneura pinus. By fitting models to a combination of observational and experimental data, we show that parasitoid attacks are the main source of larval budworm mortality at low and intermediate budworm densities, but that resource competition is the main source of mortality at high densities. Our results further show that the effects of resource competition become more severe with increasing host tree age, and that the effects of parasitoids are moderated by strong competition between parasitoids for hosts. Allowing for these effects in a model of insect outbreaks leads to realistic outbreak cycles, while a host-parasitoid model without resource competition produces an unrealistic stable equilibrium. The effects of resource competition are modulated by tree age, which in turn depends on fire regimes. Our model therefore suggests that increases in fire frequency due to climate change may interact in complex ways with budworm outbreaks. Our work shows that resource competition can be as important as natural enemies in modulating insect outbreaks, while demonstrating the usefulness of high-performance computing in experimental field ecology.
Data from: Signatures of selection for bonamiosis resistance in European flat oyster (Ostrea edulis): new genomic tools for breeding programs and management of natural resources
The European flat oyster (Ostrea edulis) is a highly appreciated mollusk with an important aquaculture production throughout the 20th century, in addition to playing an important role on coastal ecosystems. Overexploitation of natural beds, habitat degradation, introduction of non-native species and epidemic outbreaks have severely affected this important resource, particularly, the protozoan parasite Bonamia ostreae, which is the main concern affecting its production and conservation. In order to identify genomic regions and markers potentially associated with bonamiosis resistance, six oyster beds distributed throughout the European Atlantic coast were sampled. Three of them have been exposed to this parasite since the early 1980's and showed some degree of innate resistance (long-term affected group, LTA), while the other three were free of B. ostreae at least until sampling date (naïve group, NV). A total of 14,065 SNPs were analyzed, including 37 markers from candidate genes and 14,028 from a medium density SNP array. Gene diversity was similar between LTA and NV groups suggesting no genetic erosion due to long term exposure to the parasite, and three population clusters were detected using the whole dataset. Tests for divergent selection between NV and LTA groups detected the presence of a very consistent set of 22 markers, located within a putative single genomic region, which suggests the presence of a major quantitative trait locus associated with B. ostreae resistance. Moreover, 324 outlier loci associated with factors other than bonamiosis were identified allowing fully discrimination of all the oyster beds. A practical tool which included the 84 highest discriminative markers for tracing O. edulis populations was developed and tested with empirical data. Results reported herein could assist the production of stocks with improved resistance to bonamiosis, and facilitate the management of oyster beds for recovery production and ecosystem services provided by this species.
Data from: Consumer-resource interactions along urbanization gradients drive natural selection
<p>Urbanization is an important component of global change. Urbanization affects species interactions, but the evolutionary implications are rarely studied. We investigate the evolutionary consequences of a common pattern: the loss of high trophic-level species in urban areas. Using a gall-forming fly, Eurosta solidaginis, and its natural enemies that select for opposite gall sizes, we test for patterns of enemy loss, selection, and local adaptation along five urbanization gradients. Eurosta declined in urban areas, as did predation by birds, which preferentially consume gallmakers that induce large galls. These declines were linked to changes in habitat availability, namely reduced forest cover in urban areas. Conversely, a parasitoid which attacks gallmakers that induce small galls was unaffected by urbanization. Changes in patterns of attack by birds and parasitoids resulted in stronger directional selection, but loss of stabilizing selection in urban areas, a pattern which we suggest may be general. Despite divergent selective regimes, gall size did not very systematically with urbanization, suggesting but not conclusively demonstrating that environmental differences, gene flow, or drift, may have prevented the adaptive divergence of phenotypes. We argue that the evolutionary effects of urbanization will have predictable consequences for patterns of species interactions and natural selection.</p>
Data from: Generic and specific facets of vulnerability for analyzing trade-offs and synergies in natural resource management
<p>1. The concept of vulnerability as the combination of exposure, sensitivity and adaptive capacity to a stressor is gaining traction outside of the climate realm, opening new avenues to address contemporary sustainability issues more holistically. Yet, critical notions that underpin vulnerability have yet to be integrated into its application to natural resource management and non-climatic stressors. In particular, the way generic and stressor-specific facets of vulnerability interact and can inform decision-makers about how interventions combine and/or trade-off remains unexplored.</p> <p>2. Here, we investigate the salience of the generic/specific framing in the context of Chilean artisanal fishing communities engaged in rights-based co-management and experiencing pressures from two stressors: poaching and market volatility. Specifically, we draw on market data combined with socioeconomic surveys conducted with 446 members and leaders from 42 fisher unions to quantitatively investigate potential trade-offs and synergies between facets of vulnerability to poaching and markets.</p> <p>3. Generic adaptive capacity (i.e. flexibility, assets, learning, organization and agency) likely facilitated stressor-specific adaptive capacities to both stressors. High levels of specific adaptive capacity to one stressor neither increased exposure nor undermined specific adaptive capacity to the other stressor. However, adaptive capacity did not translate into exposure reduction as expected, suggesting that adaptation barriers may prevent fishers from mobilizing adaptive capacity into effective adaptive action.</p> <p>4. This study illustrates how breaking down vulnerability into generic and specific facets can help us better anticipate important trade-offs and synergies in management interventions. More generally, it highlights the potential of the climate adaptation and vulnerability literatures in informing place-based management of natural resources.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.