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65 results for “novel forest”
Data from: Where did all the trees come from? A novel multispecies approach reveals the impacts of biogeographical history and functional diversity on rain forest assembly
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Data from: Ovipositor and mouthparts in a fossil insect support a novel ecological role for early orthopterans in 300 million years old forests
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Data from: Insect herbivory in novel Quercus ilex L. forests: the role of landscape attributes, forest composition and host traits
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Supplementary material 2 from: Liu F, Marincowitz S, Chen S, Mbenoun M, Tsopelas P, Soulioti N, Wingfield MJ (2020) Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. MycoKeys 69: 33-52. https://doi.org/10.3897/mycokeys.69.53205
Figure S2. ML tree of Huntiella species generated from the BT1 DNA sequence data
Supplementary material 3 from: Liu F, Marincowitz S, Chen S, Mbenoun M, Tsopelas P, Soulioti N, Wingfield MJ (2020) Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. MycoKeys 69: 33-52. https://doi.org/10.3897/mycokeys.69.53205
Figure S3. ML tree of Huntiella species generated from the TEF-1α DNA sequence data
Figure 2 from: Liu F, Marincowitz S, Chen S, Mbenoun M, Tsopelas P, Soulioti N, Wingfield MJ (2020) Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. MycoKeys 69: 33-52. https://doi.org/10.3897/mycokeys.69.53205
Figure 2 Micrographs of Huntiella hellenica sp. nov. (ex-holotype CMW 54800 = PPRI 27982) A culture grown on 2% MEA at 30 °C (optimum growth temperature) in the dark for 34 d B, C colony with ascomatal base embedded in mycelia with ascospore mass at the tip of ostiolar neck D–F young ascoma showing development of ostiolar neck and less-pigmented base G, H mature ascoma ornamented with spines I close-up of ascomatal wall showing spines J–L close up of ornament (spin-like) M, N Ostiolar hyphae O Ascospores P Ascospores covered with sheath appearing like a hat Q, R Germinating ascospores S Lageniform conidiogenous cell T Cylindrical-shape conidiogenous cell U Conidia in various shapes from diverse barrel-shaped to rectangular-shaped V rectangular-shaped conidia W chains of conidia. Scale bars: 1 mm (B, C); 50 µm (D–H); 10 µm (I–W).
Figure 3 from: Liu F, Marincowitz S, Chen S, Mbenoun M, Tsopelas P, Soulioti N, Wingfield MJ (2020) Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. MycoKeys 69: 33-52. https://doi.org/10.3897/mycokeys.69.53205
Figure 3 Micrographs of Huntiella krugeri sp. nov. (ex-holotype CMW 36849 = CBS 131676 = PPRI 27952). A Culture grown on 2% MEA in the dark for 34 d B, C Conidiogenous cell D Conidia in various shapes E Chain of conidia in different shapes F Chain of rectangular-shaped conidia with top-end of club-shaped G, HAleurioconidia. Scale bars: 10 µm (B–H).
Figure 1 from: Liu F, Marincowitz S, Chen S, Mbenoun M, Tsopelas P, Soulioti N, Wingfield MJ (2020) Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. MycoKeys 69: 33-52. https://doi.org/10.3897/mycokeys.69.53205
Figure 1 ML tree of Huntiella species generated from the combined DNA sequence data of ITS, BT1 and TEF-1α DNA. Sequences generated from this study are printed in bold type. Bold branches indicate posterior probabilities values ≥ 0.9. Bootstrap values and posterior probabilities values are presented above branches as ML/MP/BI. Bootstrap value < 50% or probabilities values < 0.9 are marked with *. Nodes lacking the support value are marked with -. Ceratocystis cercfabiensis (CMW 43029) represents the outgroup.
Supplementary material 1 from: Liu F, Marincowitz S, Chen S, Mbenoun M, Tsopelas P, Soulioti N, Wingfield MJ (2020) Novel species of Huntiella from naturally-occurring forest trees in Greece and South Africa. MycoKeys 69: 33-52. https://doi.org/10.3897/mycokeys.69.53205
Figure S1. ML tree of Huntiella species generated from the ITS DNA sequence data
Figure 2 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 2 - Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of combined DNA dataset of tef1, his3, cmdA and tub2 gene sequences. ML and MP (maximum parsimony) bootstrap values (ML/MP) are shown above branches, with bootstrap values below 60 % marked with an *, and absent analysis values are marked with -. Isolates representing ex-type material are marked with "T", isolates highlighted in bold were sequenced in this study and novel species were covered in orange. The tree was rooted to Ca. pauciramosa (CMW 5683 and CMW 30823).
Figure 4 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 4 - Calonectria montana. a–c Macroconidiophores d–f Sphaeropedunculate vesicles g–h Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides i–j Macroconidia Scale bars: a–c = 20 μm; d–j = 10 μm.
Figure 3 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 3 - Calonectria lichi. a–c Macroconidiophore d–f Clavate vesicles g–i Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides j–k Macroconidia Scale bars: a–c = 50 μm; d–f = 5 μm; g–k = 10 μm.
Figure 1 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 1 - Phylogenetic tree of Calonectria species in the Prolate group based on maximum likelihood (ML) analysis of combined DNA dataset of tef1, his3, cmdA and tub2 gene sequences. ML and MP (maximum parsimony) bootstrap values (ML/MP) are shown above branches, with bootstrap values below 60 % marked with an *, and absent analysis values are marked with -. Isolates representing ex-type material are marked with "T", isolates highlighted in bold were sequenced in this study and novel species were covered in blue. The tree was rooted to Ca. hongkongensis (CBS 114711 and CBS 114828).
FIG. 5. — Absidia soli V.GHurdeal., E.Gentekaki., H.B.Lee & K.D in Mucoralean fungi in Thailand: novel species of Absidia from tropical forest soil
FIG. 5. — Absidia soli V.GHurdeal., E.Gentekaki., H.B.Lee & K.D.Hyde, sp. nov. (MFLU 20-0414, holotype) (Cultures grown at room temperature for 3-5 days): A-F, different stages in development of sporangium; D, sporangium mounted with 5% potassium hydroxide; F, mature sporangium; G, branching of sporangiophores from a single point of the stolon (whorls); H, sporangiospores produced when cultured in PDA; I, rhizoids; J, sporangiospores from culture grown in MEA; K, columella with apical projection, collarette and septum below the apophysis. Scale bars: A-D, I, 20 μm; E-F, K, 10 μm; H, J, 5 μm; K, 60 μm.
FIG. 4. — Absidia edaphica V.GHurdeal., E.Gentekaki., H.B.Lee & K.D in Mucoralean fungi in Thailand: novel species of Absidia from tropical forest soil
FIG. 4. — Absidia edaphica V.GHurdeal., E.Gentekaki., H.B.Lee & K.D.Hyde, sp. nov. (MFLU 20-0416, holotype) (Cultures grown at room temperature for 3-5 days): A-E, different stages of sporangia development (C-E, sporangium stained with Lacto-phenol cotton blue reagent); F, rhizoids; G, columella with collarette, apical projection and septum below the apophysis; H, single sporangiophore originating from the stolon; I, sporangiospores in CMA; J, sporangiospores produced in MEA. Scale bars: A-F, H, 20 μm; G, 10 μm; I-J, 5 μm.
Figure 3 from: Zhou Y-M, Zhi J-R, Ye M, Zhang Z-Y, Yue W-B, Zou X (2018) Lecanicillium cauligalbarum sp. nov. (Cordycipitaceae, Hypocreales), a novel fungus isolated from a stemborer in the Yao Ren National Forest Mountain Park, Guizhou. MycoKeys 43: 59-74. https://doi.org/10.3897/mycokeys.43.30203
Figure 3 Lecanicilliumcauligalbarum. a Synnemata emerged from the corpse of a stemborer (Lepidoptera) b Culture plate, showing the front (upper) and the back (lower) of the colony, cultured on PDA medium c–e Phialides solitary or in 2–3 whorls f–g Conidia. Scale bars: 10 mm (b, c, e), 5 μm (d, f, g).
Figure 2 from: Zhou Y-M, Zhi J-R, Ye M, Zhang Z-Y, Yue W-B, Zou X (2018) Lecanicillium cauligalbarum sp. nov. (Cordycipitaceae, Hypocreales), a novel fungus isolated from a stemborer in the Yao Ren National Forest Mountain Park, Guizhou. MycoKeys 43: 59-74. https://doi.org/10.3897/mycokeys.43.30203
Figure 2 Phylogenetic relationships of the form genus Lecanicillium, Akanthomyces, Samsoniella, Blackwellomyces, Hevansia and related genera in the Cordycipitaceae. Statistical support values (≥ 0.5/50%) are shown at the nodes for BI posterior probabilities/ML boostrap support.
Figure 1 from: Zhou Y-M, Zhi J-R, Ye M, Zhang Z-Y, Yue W-B, Zou X (2018) Lecanicillium cauligalbarum sp. nov. (Cordycipitaceae, Hypocreales), a novel fungus isolated from a stemborer in the Yao Ren National Forest Mountain Park, Guizhou. MycoKeys 43: 59-74. https://doi.org/10.3897/mycokeys.43.30203
Figure 1 Phylogenetic analysis of the isolated strains GZUIFRZHJ01 and GZUIFRZHJ02 and related species derived from a combined dataset of partial ITS+SSU+LSU+TEF+RPB1+RPB2 sequences. Statistical support values (≥ 0.5/50%) are shown at the nodes for BI posterior probabilities/ML boostrap support.
Novel representation of leaf phenology improves simulation of Amazonian evergreen forest photosynthesis in a land surface model
<p>This dataset contains the LAI, Litterfall and GPP etc. of the four Amazon FLUX sites (BR-Sa1, BR-Sa3, BR-Ma2 and GF-Guy) simulated using the improved ORCHIDEE model and the corresponding FLUXNET eddy-covariance or ground-measured data. The more detial please the ReadMe.pdf in the zip.</p> <p>Data is organized with netCDF4(.nc).</p> <p><br> If you want to know more detail please contact: chenxzh73@mail.sysu.edu.cn</p>
tRForest: a novel random forest-based algorithm for tRNA-derived fragment target prediction
GEO Series GSE189510. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.