Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
448
datasets available to search
ShareScore release 0.9.0
Dataset results
448 results for “phylogenetic inference”
Figure 1. Figure 1 in Inferring phylogenetic relationships in the common vole (Microtus arvalis) based on mitochondrial and nuclear sequence diversities
Figure 1. Figure 1. Location map of AUMAC samples and GenBank Sequences (modified from Yiğit et al. 20161). Black line is the border of arvalis and obscurus forms; dotted lines show possible hybridization zone of the two forms. Western Europe (1: Orkney Island, 2: Spain, 3: France, 4: Belgium), Central Europe (5: Germany, 6: Switzerland, 7: Czech Republic), Eastern Europe (8: Austria, 9: Slovenia, 10: Bosnia, 11: Montenegro, 12: Serbia, 13: Hungary, 14: Poland, 15: Ukraine, 16: European Russia/Vladimir, 17: European Russia/ Arkhangelsk Oblast) groups are 'arvalis' form. Anatolia and its surroundings (18: Anatolia/Ardahan, Kars and Erzurum provinces, 19: Iran, 20: Armenia) and Asia (21: Russia/Orenburg Oblast, 22: Russia/ Chelyabinsk Oblast, 23: China/Xinjiang, 24: Siberia) belong to 'obscurus' form.
Fig. 5. Maximum likelihood phylogenetic tree inferred from nucleotide sequence data from mitochondrial 16S in A herpetological survey of western Zambia
Fig. 5. Maximum likelihood phylogenetic tree inferred from nucleotide sequence data from mitochondrial 16S rRNA of Phrynobatrachus natalensis. Numbers above branches are non-parametric bootstrap support values. Specimen vouchers or GenBank accession numbers are shown in parentheses. Colored polygons highlight the clades comprising specimens from this study. (*) Nearest sample from type locality of Phrynobatrachus natalensis; (**) Haplotype groups A and B in Zimkus and Schick (2010).
Fig. 5. Phylogenetic tree depicting inferred genetic relationships among Leucocytozoon mitochondrial DNA cytochrome b in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Fig. 5. Phylogenetic tree depicting inferred genetic relationships among Leucocytozoon mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the Yukon-Kuskokwim Delta, Alaska during 2006–2016 and those previously reported for closely related haemosporidian morphospecies on the National Center for Biotechnology Information GenBank and Malavi databases (accession IDs in parentheses). Bars to the right of tree represent the assignment of sequences to L. simondi clade A (teal), L. simondi clade B (orange), or other Leucocytozoon. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4. Phylogenetic tree depicting inferred genetic relationships among Haemoproteus mitochondrial DNA cytochrome b in Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Fig. 4. Phylogenetic tree depicting inferred genetic relationships among Haemoproteus mitochondrial DNA cytochrome b haplotypes identified from blood samples collected from Emperor Geese inhabiting the Yukon-Kuskokwim Delta, Alaska during 2006–2016 and those previously reported for closely related haemosporidian morphospecies on the National Center for Biotechnology Information GenBank and Malavi databases (accession IDs in parentheses).
Fig. 1 in Molecular characterization of Dipetalonema yatesi from the black-faced spider monkey (Ateles chamek) with phylogenetic inference of relationships among Dipetalonema of Neotropical primates
Fig. 1. Macroscopic observation of Dipetalonema yatesi on the capsule of the left kidney (A) and on the parietal peritoneum (B) at the post-mortem examination of a black-faced spider monkey (Ateles chamek).
Fig. 2 in Molecular characterization of Dipetalonema yatesi from the black-faced spider monkey (Ateles chamek) with phylogenetic inference of relationships among Dipetalonema of Neotropical primates
Fig. 2. Phylogenetic relationships among species of Dipetalonema spp. infecting non-human primates (i.e., Ateles spp., Cebus spp., Lagothrix poeppigii, and Saimiri sciureus) using a concatenated dataset of 1615 base pairs including the 18S of the nuclear ribosomal DNA, 12S of the ribosomal RNA, and cytochrome c oxidase subunit 1 (cox1) of the mitochondrial DNA. The taxa Acanthocheilonema viteae, Litomosoides sigmodontis, and Wuchereria bancrofti were used as outgroups. At each branch, the nodal support is represented by the maximum likelihood percentage above and the Bayesian posterior probability below (the hyphen indicates when support is missing).
Fig. 3 in Molecular characterization of Dipetalonema yatesi from the black-faced spider monkey (Ateles chamek) with phylogenetic inference of relationships among Dipetalonema of Neotropical primates
Fig. 3. Phylogenetic relationships among species of Dipetalonema using a dataset of 586 base pairs including the partial cytochrome c oxidase subunit 1 (cox1) of the mitochondrial DNA. The black silhouettes of the monkey, tamarin, and camelid indicate the hosts from which the filarioid nematodes were isolated. The taxa Acanthocheilonema viteae, Litomosoides sigmodontis, and Wuchereria bancrofti were used as outgroups. At each branch, the nodal support is represented by the maximum likelihood percentage above and the Bayesian posterior probability below.
FIGURE 17 in Soft-tissue anatomy of the Plesiosaur pectoral girdle inferred from basal Eosauropterygia taxa and the extant phylogenetic bracket
FIGURE 17. Comparison of pectoral girdle musculature reconstruction between this study and previously published reconstructions.
FIGURE 16. M. costocoracoideus. Reconstruction for Neusticosaurus 1 in Soft-tissue anatomy of the Plesiosaur pectoral girdle inferred from basal Eosauropterygia taxa and the extant phylogenetic bracket
FIGURE 16. M. costocoracoideus. Reconstruction for Neusticosaurus 1 in anterior view, 2 in ventral view, 3 in lateral view, 4 fleshed-out muscle reconstruction and 5 complete skeletal reconstruction in lateral view. Reconstruction for Ceresiosaurus 6 in anterior view, 7 in ventral view, 8 in lateral view, 9 fleshed-out muscle reconstruction and 10 complete skeletal reconstruction in lateral view. Reconstruction for Rhomaleosaurus 11 in anterior view, 12 in ventral view, 13 in lateral view, 14 fleshed-out muscle reconstruction and 15 complete skeletal reconstruction in lateral view.
FIGURE 1 in Soft-tissue anatomy of the Plesiosaur pectoral girdle inferred from basal Eosauropterygia taxa and the extant phylogenetic bracket
FIGURE 1. Three topological hypotheses for the evolution of the pectoral girdle elements from the basal neodiapsid condition to basal eosauropterygian condition are depicted in two-dimensions. Large black dot – glenoid; Small black dot – coracoid foramen; A- anterior margin of the coracoid; M-medial margin of the coracoid; CL – clavicle; INCL – interclavicle; SC – scapula; ST – sternum.
FIGURE 3 in Soft-tissue anatomy of the Plesiosaur pectoral girdle inferred from basal Eosauropterygia taxa and the extant phylogenetic bracket
FIGURE 3. Muscle reconstruction of the pectoral girdle musculature of the Eosauropterygia using data from the extant phylogenetic bracket, the fossil record and developmental patterns.
FIGURE 5. M. subcoracoscapularis. Reconstruction for Neusticosaurus 1 in Soft-tissue anatomy of the Plesiosaur pectoral girdle inferred from basal Eosauropterygia taxa and the extant phylogenetic bracket
FIGURE 5. M. subcoracoscapularis. Reconstruction for Neusticosaurus 1 in anterior view, 2 in ventral view, 3 in lateral view, 4 in fleshed-out muscle reconstruction and 5 complete skeletal reconstruction in lateral view. Reconstruction for Ceresiosaurus 6 in anterior view, 7 in ventral view, 8 in lateral view, 9 fleshed-out muscle reconstruction and 10 complete skeletal reconstruction in lateral view. Reconstruction for Rhomaleosaurus 11 in anterior view, 12 in ventral view, 13 in lateral view, 14 fleshed-out muscle reconstruction and 15 complete skeletal reconstruction in lateral view.
Fig. 3 in Phylogenetic relationships of Eurema butterflies from Peninsular Malaysia inferred from CO1 and 28S gene sequences with emphasis on Eurema hecabe
Fig. 3. Maximum Likelihood output phylogram for CO1-28S concatenated analysis showing seven major clades representing the seven Eurema species obtained from this study. Bootstrap scores are shown at the branching points. The tree was rooted with the genus Graphium. The butterfly figures show the comparison of morphology among the species corresponding to their respective clades. Figures of butterflies provided as upperside of the wings (left) and downside of wings (right).
Fig. 1 in Phylogenetic relationships of Eurema butterflies from Peninsular Malaysia inferred from CO1 and 28S gene sequences with emphasis on Eurema hecabe
Fig. 1. The geographical sites where samplings have been conducted in Peninsular Malaysia. N, northern area; E, eastern area; W, western area; S, southern area. The dots indicate the distribution of various sampling sites in this study. Triplet letter represents the site code.
Fig. 2 in Phylogenetic relationships of Eurema butterflies from Peninsular Malaysia inferred from CO1 and 28S gene sequences with emphasis on Eurema hecabe
Fig. 2. Phylogenetic tree of Maximum-Likelihood method showing the comparison of phylogram as inferred from partial sequences of mtDNA CO1 and 28S rDNA genes. The bootstrap scores obtained from 1,000 replicates for ML/MP analyses are shown at the branching point. The trees were rooted with the genus Graphium.
Text-fig. 2. Species of Masillamys considered on the phylogenetic tree of theridomorphs (Vianey-Liaud and Marivaux 2017: fig. 7), within the basal Theridomorpha, before the polyphyletic genus Protadelomys. Position inferred from their dental features (see text). in A Reevaluation Of The Taxonomic Status Of The Rodent Masillamys Tobien, 1954 From Messel (Germany, Late Early To Early Middle Eocene, 48-47 M.Y.)
Text-fig. 2. Species of Masillamys considered on the phylogenetic tree of theridomorphs (Vianey-Liaud and Marivaux 2017: fig. 7), within the basal Theridomorpha, before the polyphyletic genus Protadelomys. Position inferred from their dental features (see text).
Figure 9 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
Figure 9. Unrooted maximum parsimony trees of Doradidae inferred from molecular and morphological data. (A) Molecular tree based on 3833 bp of 12S, 16S and EF1a exons + introns sequence data; the black star indicates the hypothetical attachment point of the root (see Fig. 7). (B) Morphological tree based on 95 morphological characters (Higuchi, 1992); the black star indicates the hypothetical attachment point of the root (see Fig. 1). Numbers at nodes are bootstrap percentages based on 1000 pseudoreplicates. Support values <50% are not shown.
Figure 8 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
Figure 8. Maximum likelihood tree of Doradidae inferred from analysis of combined 12S, 16S and EF1a (exons + introns) sequence data. Numbers at nodes represent percentage Bayesian posterior probabilities, ML bootstrap (500 pseudoreplicates) and MP bootstrap (1000 pseudoreplicates). This is an unrooted tree; the black star indicates the hypothetical attachment point of the root (see Fig. 7).
Figure 2. Proposed 12S in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
Figure 2. Proposed 12S rRNA secondary structure model for Doradidae. Single bases enclosed in squares indicate positions thought to be involved in the decoding mechanism.
Figure 1 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
Figure 1. Higuchi's (1992) phylogeny of Doradidae based on osteological characters. Subfamilies are labelled on the right. Unpublished genus–group names are indicated by A, B and C.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.