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78 results for “preprints”
Recognizing Preprint Peer Review Workshop Outputs
<p>These outputs were produced in connection with the Recognizing Preprint Peer Review workshop held at Janelia Research Campus & Online on December 1-2 by EMBO, HHMI, and ASAPbio.</p> <p>Original versions of some of these files, retaining original formatting and features, can be found on Google Docs:</p> <p><a href="https://docs.google.com/spreadsheets/d/1W24jrTYPqoLX9eJrjBd5ujtTwuW9X-MqN7Ti_rTqlZA/edit?usp=sharing">Survey results</a></p> <p><a href="https://docs.google.com/presentation/d/1h9xDkYXXyeETg1mgWy2-ZgEnYOdPrYxY8-F1ifkE5dc/edit?usp=sharing">Slides</a></p>
Supplemental data for: Current ethics policies in 36 preprint servers
<p>Preprints, which are non–peer-reviewed articles, offer a rapid dissemination of information, and have gained traction in academic publishing, often serving as the publishing precursors of peer-reviewed journals. Given that many peer-reviewed journals, with often strict ethics policies, allow the prior publication of papers as preprints, we were interested in appreciating the ethics policies in place in preprint servers. We selected 36 preprint servers from the ASAPbio list to base our assessment. We found that that only 8% of analyzed preprint servers contained a dedicated section on the server's ethics policy. As documents that purportedly transmit scientific information, including data-based evidence, we believe that there is a need to fortify the stringency of ethics policies in preprint servers, even standardize them across ASAPbio-listed preprint servers.</p>
Archive of ASAPbio's list of preprint servers: policies and practices across platforms
<p>These are the raw data behind ASAPbio's list of of preprint servers, found at https://asapbio.org/preprint-servers</p> <p>An earlier version of this dataset was reported in https://zenodo.org/record/3700874#.ZD2SC3bMIQ8</p>
Forecasting the publication and citation outcomes of Covid-19 preprints
Open the record for dataset details and reuse information.
Full list of signatories to: Pe'er et al. "Action needed for the EU Common Agricultural Policy to address sustainability challenges" (Preprint version)
<p>This is the list of signatories to the Scientists' Statement on the EU's Common Agricultural Policy:</p> <p>"Action needed for the EU Common Agricultural Policy to address sustainability challenges" (Pe'er et al. 2019).</p> <p>The preprint version (DOI: 10.5281/zenodo.3666258) has been made available online between 4.11.2019 and 19.2.2020.</p> <p>Signatories were requested to read the full statement prior to adding their name in its support; and to provide a proof that they are scientists.</p> <p>A final version of the paper has been published in March 2020 in the journal People and Nature.</p> <p> </p>
Biomedical preprints per month, by source and as a fraction of total literature
<p>This is a snapshot of a <a href="https://docs.google.com/spreadsheets/d/1c1WzYIoLhzY09AkwyhSVDtan3oYV8qrHa3WgPHAeVVM/edit?usp=sharing">Google sheet</a> containing counts of biomedical preprints by source and as a fraction of the total biomedical literature <strong>through 2020-06.</strong></p> <p>Note: this does not yet include >6,000 preprints on relevant OSF platforms.</p> <p><strong>Data sources</strong></p> <p>arXiv q-bio, PeerJ Preprints, and bioRxiv counts through 2018-12 were sourced from Jordan Anaya's <a href="https://github.com/OmnesRes/prepub/tree/master/analyses">PrePubMed</a>. Following that, arXiv q-bio counts were sourced from <a href="https://arxiv.org/year/q-bio/19">arXiv statistics</a>, and PeerJ Preprints and bioRxiv counts were taken from searches of <a href="https://europepmc.org/">EuropePMC</a>.</p> <p>All counts from F1000 & Open Research platforms, preprints.org, ChemRxiv, and medRxiv were taken from searches of <a href="https://europepmc.org/">EuropePMC</a>.</p> <p>Counts for Research Square are derived from Crossref through 2020-03, thereafter from EuropePMC. Counts for the Lancet and Sneak Peek were taken from web searches.</p> <p>Total biomedical literature is from PubMed.</p>
Top 100-Ranked Clinical Journals' Preprint Policies as of April 23, 2020
<p>Objective: To determine the top 100-ranked (by impact factor) clinical journals' policies toward publishing research previously published on preprint servers (preprints). </p> <p>Design: Cross sectional. Main outcome measures: Editorial guidelines toward preprints, journal rank by impact factor.</p> <p>Results: 86 (86%) of the journals examined will consider papers previously published as preprints (preprints), 13 (13%) determine their decision on a case-by-case basis, and 1 (1%) does not allow preprints. </p> <p>Conclusions: We found wide acceptance of publishing preprints in the clinical research community, although researchers may still face uncertainty that their preprints will be accepted by all of their target journals.</p>
Notes from breakout sessions at the ASAPbio Preprint Service Technical Workshop
<p>1A; Architecture, APIs, metadata, and file formats of existing preprint servers/platforms/journals)</p> <p>1B: Capabilities of document conversion services (.doc or latex to .xml/.html)</p> <p>2A: Tools for automated screening – plagiarism, image manipulation, author authentication</p> <p>2B: Interfaces and approaches for human moderation and curation</p> <p>3A: Data storage models (and linking to external datasets)</p> <p>3B: Identifiers, versioning, linking (including to journal publications)</p> <p>4A: Search and bibliometrics tools; syndicating content to external search tools</p> <p>4B: Enabling access by individuals, journal content management systems, and others</p>
What You Get Is What You See: A Visual Markup Decompiler arXiv preprint arXiv:1609.04938
<p>What You Get Is What You See: A Visual Markup Decompiler</p> <p>arXiv preprint arXiv:1609.04938</p> <p> </p>
Supplementary videos: CD56/NCAM mediates cell migration of human NK cells by promoting integrin-mediated adhesion turnover [preprint]
Open the record for dataset details and reuse information.
Dataset of preprint: Effects of dimensionality on the performance of hydrodynamic models
<p>The dataset supports the findings of the preprint entitled: Effects of dimensionality on the performance of hydrodynamic models. The manuscript presents a comparison of three models of distinct dimensionalities applied for the same reservoir. Therefore, the dataset is compound of:</p> <ul> <li>Boundary conditions for the hydrodynamic models (meteorological conditions, inflow discharges and water temperature, and outflow discharges), which were obtained through measurements and simulations (inflow discharges and water temperature).</li> <li>In situ measurements of temperature and flow velocities were used as a reference to evaluate the performance of each model.</li> <li>Results of Lake Analyzer (a tool to calculate several indexes commonly used for lake physical states), estimated with measurements and model results.</li> <li>Models set up and results.</li> <li>Relevant scripts used to perform the analysis, in MATLAB.</li> </ul> <p>Their respective sources are mentioned over the manuscript.</p>
Epigenetic variation impacts ancestry-associated differences in the transcriptional response to influenza infection (preprint)
<p>Processed inputs necessary to run the main analyses described in https://github.com/katiearacena/EU_AF_ancestry_flu_code</p>
List of publishers allowing deposit of preprint and postprint or final version in an open archive.
<p>The content of this dataset is the following:</p> <p><em>api29.green.xml</em><br> List of the publishers allowing deposit of the preprint (version submitted to the publisher) and of the postprint (version reviewed by the publisher) or the final version (version published with the publisher's layout) in a open archive.</p> <p><em>api29.blue.xml</em><br> List of the publishers allowing deposit of the postprint (version reviewed by the publisher) or the final version (version published with the publisher's layout) in a open archive.</p> <p><em>api29.yellow.xml</em><br> List of the publishers allowing deposit of the preprint (version submitted to the publisher) in an open archive.</p> <p><em>api29.greenCH.xml</em><br> List of Swiss journals allowing deposit of preprint and postprint or final version in an open archive.</p> <p><em>api29.greenGB.xml</em><br> List of British journals allowing deposit of preprint and postprint or final version in an open archive.</p> <p><em>api29.greenUS.xml</em><br> List of American journals allowing deposit of preprint and postprint or final version in an open archive.</p> <p>These files describe publishers by providing their name, conditions of deposit in an open archive of preprints (can | cannot), postprints (can | cannot) and final version (can | cannot). Potential restrictions are also mentionned.</p>
Supplementary material for Beyond growth beyond national jurisdiction (preprint): Appendix 10
<p>This is Appendix 10 for my MSc thesis. </p>
Supplementary material for Beyond growth beyond national jurisdiction (preprint): Appendix 7
<p>This is Appendix 7 for my Msc thesis. </p>
Supplementary material for Beyond growth beyond national jurisdiction (preprint): Appendix 11
<p>This is Appendix 11 for my MSc thesis. </p>
Supplementary material for Beyond growth beyond national jurisdiction (preprint): Appendix 1
<p>This is Appendix 1 for my Msc thesis. </p>
comparison of sites listed in ASAPbio (Preprint services) and Institute for Sustainable Infrastructure and their accessibility as a function of countries GDP
Open the record for dataset details and reuse information.
data for preprint: MARGO (Massively Automated Real-time GUI for Object-tracking),a platform for high-throughput ethology by Werkhoven et al
<p>Data for preprint: MARGO (Massively Automated Real-time GUI for Object-tracking),a platform for high-throughput ethology by Werkhoven et al.<br> <br> index.html provides a read-me for the organization of this repository. For its links to work the two .zip files should be extracted.</p>
Source codes for preprint Newmark algorithm for dynamic analysis with generalized Maxwell model
<p>Snapshot of a GitLab repository, containing Python source codes of results presented in the preprint by the same authors.</p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.