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1,481 results for “processed data”
Raw and processed GO term data to support running GCEA analyses using ensemble-based nulls, as described in the manuscript, 'Overcoming bias in gene category enrichment analyses of brain-wide transcriptomic data'.
<p>Data to support a toolbox for performing gene category enrichment analyses, including against ensembles of null phenotypes.</p> <p>Descriptions of how these data files can be used for this purpose are in the documentation for the toolbox, at https://github.com/benfulcher/GCEA_FalsePositives</p>
Processed NOMe-seq data for four human cell lines
<p>Raw NOME-seq data (Gene Expression Omnibus accession GSE57498) for the human cell lines HMEC, MCF7, PrEC, PC3 were aligned to hg19 using bwa-meth. Methylation and occupancy calls were made at WCG and GCH sites respectively using bwa-meth, BisSNP and bespoke, tailor made scripts (https://github.com/astatham/NOMe-seq-analysis).</p>
Data Management Plan (DMP) Process Example
<p>This diagram is an example of a funding program solicitation mapped to the select key components of a data management plan, major data lifecycle process, infrastructure and resources, and proposed elements for sustainability of a funded research project. This diagram was developed out of a need to illustrate introductory DMP processes workflows for education, teaching, and training purposes. The DCC Checklist for a Data Management Plan (2013) and the USGS Data Lifecycle Model (2013) were adapted in this diagram.</p>
Data set to article "Rapid serial processing of natural scenes: Color modulates detection but neither recognition nor the attentional blink"
<p>The file Data_Marxetal2014_AB.csv contains the data to the paper<br> Marx, S., Hansen-Goos, O., Thrun, M., & Einhäuser, W. (2014). Rapid serial processing of natural scenes: Color modulates detection but neither recognition nor the attentional blink. Journal of Vision, 14(14):4, 1-18, http://www.journalofvision.org/content/14/14/4, doi:10.1167/14.14.4.<br> as comma-separated value (csv) file</p> <p>Each row contains the data of one trial, represented by the following columns</p> <p>1 - number of the line<br> 2 - subject ID<br> 3 - experiment number<br> 4 - color condition (1: gray inverted, 2: gray original, 3: color inverted, 4: color original)<br> 5 - number of targets<br> 6 - SOA in ms<br> 7 - serial position of first target (0 if absent)<br> 8 - serial position of second target (0 if absent)<br> 9 - category of first target (1: feline, 2: avian, 3: ungulate, 4: canine)<br> 10 - category of second target (1: feline, 2: avian, 3: ungulate, 4: canine)<br> 11 - response to "How many animals?" (detection)<br> 12 - response to first category (recognition, 1: feline, 2: avian, 3: ungulate, 4: canine)<br> 13 - response to second category (recognition, 1: feline, 2: avian, 3: ungulate, 4: canine)</p>
NLDAS-2 Sacramento (SAC) Post-processed Daily-mean Soil Moisture Data
<p>This dataset contains North American Land Data Assimilation System Version 2 (NLDAS-2) Sacramento (SAC) post-processed daily-mean soil moisture data from 1993 to 2017 at four layers: 0-10 cm, 10-40 cm, 40-100 cm, and 0-100 cm. Original post-processing of the hourly data was conducted at National Oceanic and Atmospheric Administration (NOAA) by Dr. Youlong Xia and then later provided to the NOAA Physical Sciences Laboratory (PSL). Daily-mean data were generated at PSL from the hourly data by averaging data from 8 times each day (0,3,6,9,12,15,18,21 Z). The data are written in netCDF format and provided in annual netCDF files.</p>
Input data for ismip6-gris-results-processing
<p>This archive provides the input data used for scalar processing of ISMIP6 Greenland ice sheet output data. </p><p>Processing scripts are available on github (https://github.com/ismip/ismip6-gris-results-processing) and have been additionally archived on zenodo (https://zenodo.org/records/3939115).</p><p>Results are related to publication "The future sea-level contribution of the Greenland ice sheet: a multi-model ensemble study of ISMIP6" , Goelzer et al., 2020</p><p> </p>
Data and Code for "Why are generalists the 'winners' of habitat loss? Unveiling the process underlying specialist-generalist replacements in fragmented landscapes"
<p><span>Data and R-based workflow for the study "Why are generalists the ‘winners’ of habitat loss? Unveiling the process underlying specialist-generalist replacements in fragmented landscapes".</span></p>
BeauAMP : processing and consolidation of open data on public procurement in France (2015-2023)
<p>This accurate and comprehensive dataset encapsulates the main information published on the BOAMP website (the official journal for public procurement notices in France) from 2015 to 2023, enriched with the individual characteristics of contracting authorities and holders of public contracts. After converting the notices into a processed table, we use a machine learning algorithm to estimate the SIRETs (i.e. national identifiers) of the contracting parties, so that we can merge the open data on public procurement with individual information on public and private agents (size, legal status, main activity, geolocation...). Finally, we estimate the geolocation of foreign firms. The dataset contains about 300,000 public contracts and describes more than 1,000,000 interactions between approximately 16,000 public entities and 130,000 companies. It covers over 100 variables on the contract features, the outcome of the award procedure, the characteristics of contracting authorities and the characteristics of awarded firms.</p> <p> </p> <p>See similar data from 2024 : https://zenodo.org/records/17187786</p>
Data from: Electron Populations and Neutralization Process in the Plume of a Gridded Ion Thruster
<h2>Data from: Electron Populations and Neutralization Process in the Plume of a Gridded Ion Thruster</h2> <ul> <li>Authors: Matteo Guaita, Alberto Marín-Cebrián, Eduardo Ahedo, Mario Merino, Fabrice Cipriani, Käthe Dannenmayer</li> <li>Contact email: mguaita@pa.uc3m.es</li> <li>Date: 15/11/2024</li> <li>Keywords: Plasma Physics, Plasma Plumes, Gridded Ion Thruster, Cathode, Facility Effects, Particel in Cell</li> <li>Version: 1.0.0</li> <li>Digital Object Identifier (DOI): 10.5281/zenodo.14165272</li> <li>License: This dataset is made available under the <a href="http://opendatacommons.org/licenses/by/1.0/" target="_blank" rel="noopener">Open Data Commons Attribution License</a></li> </ul> <h2>Abstract</h2> <p>This dataset contains the data from the simulations presented in the article submitted for pubblicaiton in the Journal: Plasma Sources Science and Technology (PSST):</p> <p>"Electron Populations and Neutralization Process in the Plume of a Gridded Ion Thruster"</p> <p>The data in this repository is the result of several hybrid PIC simulations as described in the reference. For further information on the setup, numerical parameters and physical meaning of the simulations please refer to the article</p> <h2>Dataset description</h2> <p>The simulations that produced the datasets in this repository were run with the full PIC code Picaso. The majority of the data is at steady-state, and has been averaged over the last 7000 simulation time-steps to reduce numerical noise. This averaging has been performed as a first step directly by the code through time-step accumulation techniques, and at a later stage in post-processing by averaging over the last 20 print-outs of the code. The data inside the "time_dependent" folder is instead time-varying.</p> <h2>Data files</h2> <p>Each HDF5 data-group contains the mesh and time coordinates and plasma properties of a specific simulation. In particular, the naming convention is the following:</p> <ul> <li><strong>Ref_planar.hdf5: </strong>Contains the results of the "reference planar simulation" presented in Sections III and IV of the article.</li> <li><strong>2Te_planar.hdf5: </strong>Contains the results of the simulation with a doubled electron temperature at the cathode presented in Section V of the article.</li> <li><strong>2Ie_planar.hdf5: </strong>Contains the results of the simulation with a doubled electron current at the cathode presented in Section V of the article.</li> <li><strong>No_coll_planar.hdf5: </strong>Contains the results of the simulation without inelastic electron collisions presented in Section V of the article.</li> <li><strong>Ref_axisym.hdf5: </strong>Contains the results of the non-accelerated axis-symmetric simulation presented in Section VI of the article</li> <li><strong>fcol_2.5_axisym.hdf5: </strong>Contains the results of the axis-symmetric simulation,accelerated by a factor 2.5, presented in Section VI of the article</li> <li><strong>fcol_5_axisym.hdf5: </strong>Contains the results of the axis-symmetric simulation,accelerated by a factor 5, presented in Section VI of the article</li> <li><strong>fcol_7.5_axisym.hdf5: </strong>Contains the results of the axis-symmetric simulation,accelerated by a factor 7.5, presented in Section VI of the article</li> <li><strong>fcol_10_axisym.hdf5: </strong>Contains the results of the axis-symmetric simulation,accelerated by a factor 10, presented in Section VI of the article</li> </ul> <p>In each of these files the data is organized in a series of subfolders:</p> <ul> <li><strong>Electrons_prim: </strong>Contains the steady-state properties of primary electrons</li> <li><strong>Electrons_trap: </strong>Contains the steady-state properties of trapped electrons</li> <li><strong>Ions_fast: </strong>Contains the steady-state properties of fast ions (ions injected through the thruster grids)</li> <li><strong>Ions_slow: </strong>Contains the steady-state properties of slow ions (ions produced by collisions in the plume)</li> <li><strong>Time_dependent: </strong>Contains the vector of time-stamps and spatially global data saved at the corresponding time</li> </ul> <p>The data files found in the outer simulation folder are:</p> <ul> <li><strong>xs:</strong> Physical x coordinates [cm]</li> <li><strong>zs:</strong> Physical z coordinates [cm]</li> <li><strong>phi: </strong>electric potential [V]</li> <li><strong>rho_el: </strong>space charge density [C/m³]</li> <li><strong>nn: </strong>Total neutral density [1/m³]</li> </ul> <p>The data files for each particle population are:</p> <ul> <li><strong>n: </strong>Plasma (ion) density [1/m³]</li> <li><strong>f_x: </strong>Particle flux along x [1/(m² s)]</li> <li><strong>f_y: </strong>Particle flux along y [1/(m² s)]</li> <li><strong>f_z: </strong>Particle flux along z [1/(m² s)]</li> <li><strong>p_xx: </strong>xx component of the pressure tensor [J/m³]</li> <li><strong>p_yy: </strong>yy component of the pressure tensor [J/m³]</li> <li><strong>p_zz: </strong>zz component of the pressure tensor [J/m³]</li> </ul> <p>The data files in the time dependent folder are:</p> <ul> <li><strong>t: </strong>Time coordinates [s]</li> <li><strong>phi_W: </strong>Potential of the vacuum chamber walls [V]</li> <li><strong>phi_max:</strong> Maximum value of the potential in the plume [V]</li> <li><strong>nte_frac: </strong>Fraction between the number of trapped electrons and ions in the plume bulk [%]</li> <li><strong>nu_te_ela: </strong>globally averaged trapped electron-neutral elastic collision frequency [Hz]</li> <li><strong>nu_te_ion: </strong>globally averaged trapped electron-neutral ionization collision frequency [Hz]</li> <li><strong>nu_te_exc: </strong>globally averaged trapped electron-neutral excitation collision frequency [Hz]</li> <li><strong>nu_te_cou: </strong>globally averaged trapped electron-neutral Coulomb collision frequency [Hz]</li> <li><strong>nu_pe_ela: </strong>globally averaged primary electron-neutral elastic collision frequency [Hz]</li> <li><strong>nu_pe_ion: </strong>globally averaged primary electron-neutral ionization collision frequency [Hz]</li> <li><strong>nu_pe_exc: </strong>globally averaged primary electron-neutral excitation collision frequency [Hz]</li> <li><strong>nu_pe_cou: </strong>globally averaged primary electron-neutral Coulomb collision frequency [Hz]</li> </ul> <p> </p> <p>Note that all the other quantities shown in the article may be obtained from the ones saved here. We remind here that the gas employed is Xenon and that all ions are considered to be singly charged.</p> <h2>Citation</h2> <p>Any works using this dataset or any part of it in any form shall cite it as follows. The BibTeX entry s provided for convenience:</p> <p>@dataset{sim_data_guai25b,<br> author = {Matteo Guaita and Alberto Marín-Cebrián and Mario Merino and Eduardo Ahedo and Fabrice Cipriani and Käthe Dannenmayer},<br> title = {Data from: Electron populations and neutralization process in the plume of a gridded ion thruster},<br> month = November,<br> year = 2024,<br> publisher = {Zenodo},<br> version = {1.0.1},<br> doi = {10.5281/zenodo.14165272},<br> url = {https://doi.org/10.5281/zenodo.12751281}<br>}</p> <p>The journal article associated with this data-set shall also be cited as follows:</p> <p>@article{guai25b,<br> doi = {10.1088/1361-6595/adc482},<br> year = {2025},<br> month = {mar},<br> publisher = {IOP Publishing},<br> author = {Matteo Guaita and Alberto Marín-Cebrián and Mario Merino and Eduardo Ahedo and Fabrice Cipriani and Käthe Dannenmayer},<br> title = {Electron populations and neutralization process in the plume of a gridded ion thruster},<br> journal = {Plasma Sources Science and Technology },<br>}</p> <p> </p> <p><br><br></p> <h2>Acknowledgments</h2> <p>This work, and the corresponding dataset, has been supported by the ECOMODIS project, funded by the European Space Agency, under contract 4000137869/22/NL/RA</p>
Supplementary Table 1 and data from the workshop on Digital Building Logbooks and Permit Processes for Sustainability in Sustainable Places 24.9.2024 in Luxembourg
<p>This repository contains the supplementary Table 1 and data collected during a workshop on Digital Building Logbooks and Permit Processes for Sustainability. The workshop was held in Sustainable Places on the 24th of September 2024 in Luxembourg. </p>
A High-Performance Data Processing Workflow to Incorporate Effect-Directed Analysis in Suspect and Nontarget Screening [Feature Tables]
<p>This repository is supplementary to the manuscript "High-Performance Data Processing Workflow Incorporating Effect-Directed Analysis for Feature Prioritization in Suspect and Nontarget Screening" (DOI: 10.1021/acs.est.1c04168) and includes an overview of all measured chemical features and annotations in a waste water treatment plant (WWTP) effluent, dust standard reference material (SRM) 2585 and fetal calf serum (FCS) sample.</p> <p>Samples were measured using liquid chromatography - high resolution mass spectrometry (LC-HRMS) and fractionated into 80 micro-fractions encompassing a couple of seconds from the chromatographic run. The fractions were tested for their bioactivity in the antibiotics and the TTR-binding assay. The samples were processed separately using one, two, and three technical replicates in positive and negative ion mode. The first excel sheet includes all measured chemical features, suspect screening annotation, and corresponding bioassay responses. The second sheet includes all possible isomer annotations from the CECscreen database (DOI: <a href="https://doi.org/10.5281/zenodo.3956586">10.5281/zenodo.3956586</a>) for the annotated features. </p>
Data for: Changes in Processing Characteristics and Microstructural Evolution during Friction Extrusion of Aluminum
<p>This dataset contains measurement data, micrographs and machine logs for the publication "Changes in Processing Characteristics and Microstructural Evolution during Friction Extrusion of Aluminum".</p>
Data for: From pattern to process? Dual travelling waves, with contrasting propagation speeds, best describe a self-organised spatio-temporal pattern in population growth of a cyclic rodent
<p>Centroid data used for the analysis in Roos et al. Eco Lett.</p> <p>Transects, up to 99 m in length (dependent on the field's length), were surveyed in linear stable landscape features (field, track or ditch margins) to estimate vole abundance from November 2011 until September 2017. Each transect was divided into 3 m sections (33 in total) and the presence or absence of one or more signs of vole activity (i.e., latrines by burrows, fresh vegetation clippings, and recent burrow excavations) in each section was noted. The proportion of sections with signs of vole presence per transect was then used as the abundance index. The number of surveys carried out at any time varied adaptively with the perceived risk of an outbreak (according to changes in estimated abundance in previous monitoring surveys).</p> <p>The response variable typically used in all models is proportional growth rate (r_{t,i}, where is the abundance index for site at time (Royama 1992; Berryman 2002). A benefit of using r_{t,i}, rather than ln(N_{t,i}), is that any multiplicative effects of site quality are cancelled out, provided they are constant over time. To calculate r_{t,i}, vole abundance indices are required at the same location in successive time periods (i.e., N_{t,i} and N_{t+1,i}). Given that exact transect locations were rarely reused in successive months, and all transect measurements took place throughout the year rather than discrete seasons, the data had to be aggregated to consistent locations and times to allow growth rate to be calculated. As such, transects were temporally aggregated into a respective yearly quarter (e.g., January to March 2014). Transects were spatially aggregated by sequentially selecting an unassigned transect as a reference point for the ith centroid and assigning all unassigned transects within a 5 km radius to the ith centroid, and repeating until all transects had been allocated (see Figure 2 for a summary of the number of transects assigned to each centroid, centroid locations, and time series of growth rate of each centroid). Once complete, the mean Julian day, X and Y UTM (Universal Transverse Mercator) and the mean index was calculated for all transects assigned to each centroid for each time period. Where a centroid had successive values of N_{t,i} and N_{t+1,i} available, the corresponding proportional growth rate was calculated.</p> <p>A constant of 3.03 was added to N_{t,i} to avoid zero entries (3.03 was the lowest non-zero value of <em>N</em> observed). The final dataset consisted of 3,751 observations.</p>
Rosalia: An experimental research site to study hydrological processes in a forest catchment - data repository
<p>This repository is a supplement to the paper <strong>Fürst, J., et al. (2021). “Rosalia: an experimental research site to study hydrological processes in a forest catchment.” Earth Syst. Sci. Data 13(8): 4019-4034.</strong></p> <p>Experimental watersheds have a long tradition as research sites in hydrology and have been used as far back as the late 19<sup>th</sup> and early 20<sup>th</sup> century. The University of Natural Resources and Life Sciences Vienna (BOKU) has been operating the experimental research forest site called “Rosalia” with an area of 950 ha since 1875 to support and facilitate research and education. Recently, BOKU researchers from various disciplines extended the “Rosalia” instrumentation towards a full ecological-hydrological experimental watershed. The overall objective is to implement a multi-scale, multi-disciplinary observation system that facilitates the study of water, energy and solute transport processes in the soil-plant-atmosphere continuum.</p> <p>This repository contains the datasets collected by a monitoring network of 4 discharge gauging stations, 7 rain-gauges, together with observations of air and water temperature, relative humidity and conductivity. In four profiles, soil water content and temperature are recorded in different depths. In 2019, additionally a program to collect isotopic data in precipitation and discharge was started. On one site, also Nitrate, TOC and turbidity are monitored. All data collected since 2015, including in total 56 high resolution time series data (10 min sampling interval), are provided to the scientific community.</p>
bulk-tumour-api: a programmatically accessible dataset of pre-processed bulk tumour sequencing data
<p><strong>This repository, including the API, are currently under development.</strong></p> <p><strong>bulk-tumour-api</strong>: A programmatically accessible dataset of pre-processed bulk tumour sequencing data. The python API can be found at https://github.com/tomouellette/bulk-tumour-api. All data stored in this repository have been collected from open access online sources. Original references and sources are provided in database.tsv (for empirical patient data) and synthetic.tsv (for simulated data).</p> <p><strong>A note on datasets: </strong></p> <ul> <li>All <em>empirical patient sequencing </em>samples have been processed into pseudo-VCF files which at minimum contain the following columns: sample identifier (sample), patient identifier (patient), chromosome (chr), position (pos), variant allele frequency (VAF), alternate read counts (t_alt_count), depth (DP), and total copy number (total_cn). However, if more data is required, unprocessed data including copy number segments or gene-level calls, clinical, and/or biopsy level information can be found in the /raw/. </li> <li>All <em>synthetic datasets </em>have also been processed in pseudo-VCF files. In some cases, all ground truth information (e.g. subclone frequency) is contained within the pseudo-VCF. In other cases, additional meta/ground-truth information are in separate files; any simulated sample with a column marked has_meta = True will have multiple files that will be downloaded together.</li> </ul>
Data, scripts, and figures of the article: Processing weights of chickens determined by Dual-Energy X-Ray Absorptiometry. 2. Developing prediction models
<p>This data set contains the data, JMP scripts, and figures of the article titled "Processing weights of chickens determined by Dual-Energy X-Ray Absorptiometry. 2. Developing prediction models" to be published in the journal Animal - Open Space.</p>
Data, scripts, and figures of the article: Processing weights of chickens determined by Dual-Energy X-Ray Absorptiometry. 1. Weight changes due to fasting, bleeding, and chilling
<p>This data set contains the data, JMP scripts, and figures of the article titled "Processing weights of chickens determined by Dual-Energy X-Ray Absorptiometry. 1. Weight changes due to fasting, bleeding, and chilling" to be published in the journal Animal - Open Space. </p>
Data for: Comparison of Friction Extrusion Processing from Bulk and Chips of Aluminum-Copper Alloys
<p>This dataset contains measurement data, machine logs as well as microstructure and overview images for the publication "Comparison of Friction Extrusion Processing from Bulk and Chips of Aluminum-Copper Alloys".</p>
Processing and Data for "Estimating ocean net primary productivity from daily cycles of carbon biomass measured by profiling floats"
<p><strong>Description: </strong></p> <p>These files contain processed BGC-Argo float data, figure data, the radiocarbon productivity subset, bootstrapping results, and the associated Python/Matlab code to calculate net primary productivity from daily cycles of optical backscatter and dissolved oxygen.</p> <p>The raw float data used in this study are available from the Argo Global Data Assembly Centers in Brest, France (ftp://ftp.ifremer.fr/ifremer/argo/dac/coriolis) and Monterey, California (ftp://usgodae.org/pub/outgoing/argo/dac/coriolis). The raw MODIS satellite-based productivity data is available from the Oregon State University Ocean Productivity site (<a href="http://orca.science.oregonstate.edu/npp_products.php">http://orca.science.oregonstate.edu/npp_products.php</a>). The raw MODIS satellite-based euphotic depth estimates are available from the NASA L3 browser (<a href="https://oceancolor.gsfc.nasa.gov/l3/">https://oceancolor.gsfc.nasa.gov/l3/</a>). The original ship-based estimates of net primary productivity are available from the Pangaea (<a href="https://doi.pangaea.de/10.1594/PANGAEA.932417">https://doi.pangaea.de/10.1594/PANGAEA.932417</a>) and the British Oceanography Data Centre (<a href="https://www.bco-dmo.org/dataset/814803">https://www.bco-dmo.org/dataset/814803</a>).</p> <p><strong>Please cite as: </strong></p> <p>Stoer, A., and Fennel, K. 2022. Processing and Data for Estimating ocean net primary productivity from daily cycles of carbon biomass measured by profiling floats. Zenodo. doi: 10.5281/zenodo.6977161.</p> <p><strong>Python/MATLAB Software Description: </strong></p> <p>dielFit_GOPeqCR.m: This code is from Johnson and Bif (2021). We have added outputs for standard errors for linear and PvE models and sunrise/sunset times. To run this code with the associated Python software a MATLAB engine needs to be installed. Please see: <a href="https://www.mathworks.com/help/matlab/matlab-engine-for-python.html">https://www.mathworks.com/help/matlab/matlab-engine-for-python.html</a></p> <p>argo_so_processing_20220815.py: This code is the first of two pieces of software for estimating net primary productivity from floats in the Southern Ocean. The program below obtains the data from the BGC Argo database (Argo, 2021) and processes it. Simple data quality control, interpolation, biogeochemical calculations, and data binning occur. The processed float data is located in the folder 'Processed Argo Transects'.</p> <p>argo_daily_npp_20220815.py: This code using processed Argo float data that contains oxygen and particle backscatter measurements to infer net primary production. The code combines the float that meet the criteria of sampling at all local hours of the day throughout its lifetime. Then, it constructs diel cycles from this data by finding the median value of each hour and uses the code from Johnson and Bif (2021), which is a modified version from Barone et al. (2019). The algorithm used to convert particle backscatter to particulate organic carbon is from Graff et al. (2015). We assume that dissolved primary productivity accounts for 30% of total primary productivity (Moran et al., 2022).</p> <p>argo_daily_npp_bootstrap_20220815.py: This code using processed Argo float data that contains co-located oxygen and particle backscatter measurements to infer net primary production. This code is very similar to argo_daily_npp_20220815.py but randomly samples a subset of the co-located profiles at different sample sizes before calculating net primary productivity. Productivity is calculated at each sample size 1000 times. The results of this analysis is located in the folder 'Bootstrapped Results'. </p> <p>More details can be found in the code itself. </p> <p><strong>Data Descriptions: </strong></p> Data from 'Processed Argo Transects' Folder | Description for each variable <table><tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>depth</td> <td>Average depth of depth bin</td> <td>m</td> </tr> <tr> <td>mid_depth</td> <td>Center of depth bin</td> <td>m</td> </tr> <tr> <td>pressure</td> <td>Average pressure in depth bin</td> <td>dbar</td> </tr> <tr> <td>profile_index</td> <td>Profile number or index</td> <td> </td> </tr> <tr> <td>profile_longitude</td> <td>Average longitude of profile</td> <td>degE</td> </tr> <tr> <td>profile_latitude</td> <td>Average latitude of profile</td> <td>degN</td> </tr> <tr> <td>profile_time</td> <td>Average UTC time of profile</td> <td>yyyy-mm-dd hh:mm:ss</td> </tr> <tr> <td>profile_local_time</td> <td>Average local time of profile</td> <td>yyyy-mm-dd hh:mm:ss</td> </tr> <tr> <td>profile_local_hour</td> <td>The hour of the local timestamp</td> <td> </td> </tr> <tr> <td>salinity</td> <td>Seawater salinity</td> <td>PSU</td> </tr> <tr> <td>temperature </td> <td>Seawater temperature</td> <td>degC</td> </tr> <tr> <td>oxygen</td> <td>Dissolved oxygen concentration</td> <td>umol kg-1</td> </tr> <tr> <td>oxygen_saturation</td> <td>Saturated dissolved oxygen concentration calculated from the Garcia and Gordon (1992) equation.</td> <td>umol kg-1</td> </tr> <tr> <td>oxygen_anom</td> <td>The difference between observed dissolved oxygen concentration and saturated oxygen </td> <td>umol kg-1</td> </tr> <tr> <td>bbp470</td> <td>Optical backscatter coefficient at 470 nm. Particulate organic carbon is calculated in argo_daily_npp_20220815.py</td> <td>m-1</td> </tr> </tbody> </table> <table> <tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>wmo</td> <td>WMO number of float</td> <td> </td> </tr> <tr> <td>profile_index</td> <td>Profile index or profile number taken by float</td> <td> </td> </tr> <tr> <td>profile_latitude</td> <td>Average profile latitude</td> <td>degN</td> </tr> <tr> <td>profile_longitude</td> <td>Average profile longitude</td> <td>degE</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <table> <tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>fod</td> <td>Fraction of day</td> <td> </td> </tr> <tr> <td>oxy</td> <td>Sinusoidal curve fit to oxygen</td> <td>mol m-3</td> </tr> <tr> <td>poc</td> <td>Sinusoidal curve fit to particulate organic carbon</td> <td>mol m-3</td> </tr> <tr> <td>oxy_med</td> <td>Hourly median oxygen</td> <td>mol m-3</td> </tr> <tr> <td>oxy_sem</td> <td>Hourly standard error of oxygen</td> <td>mol m-3</td> </tr> <tr> <td>poc_med</td> <td>Hourly median particulate organic carbon</td> <td>mol m-3</td> </tr> <tr> <td>poc_sem</td> <td>Hourly standard error of particulate organic carbon</td> <td>mol m-3</td> </tr> <tr> <td>region</td> <td>Name of data subset (e.g., 30-40 deg N, co-located)</td> <td> </td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <table> <tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>region</td> <td>Name of data subset (e.g., 30-40 deg N) </td> <td> </td> </tr> <tr> <td>depth</td> <td>Depth of profile</td> <td>m</td> </tr> <tr> <td>zeu</td> <td>1% euphotic depth from Lee et al. (2013) algorithm from NASA (2022) L3 satellite products. </td> <td>m</td> </tr> <tr> <td>n_profiles_bpp</td> <td>Number of backscatter profiles</td> <td> </td> </tr> <tr> <td>n_profiles_oxy</td> <td>Number of oxygen profiles</td> <td> </td> </tr> <tr> <td>n_floats_bbp</td> <td>Number of floats with backscatter measurements</td> <td> </td> </tr> <tr> <td>n_floats_oxy</td> <td>Number of floats with oxygen measurements</td> <td> </td> </tr> <tr> <td>gop_do</td> <td>Gross oxygen productivity estimated from dissolved oxygen</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>gop_do_serr</td> <td>Standard error of gross oxygen productivity estimated from dissolved oxygen</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>gop_do_p</td> <td>p-value of curve fit to hourly oxygen data</td> <td> </td> </tr> <tr> <td>gop_do_r2</td> <td>r-squared value of curve to hourly oxygen data</td> <td> </td> </tr> <tr> <td>oxy_sr</td> <td>The calculated sunrise time as a fraction of the day</td> <td> </td> </tr> <tr> <td>oxy_ss</td> <td>The calculated sunset time as a fraction of the day</td> <td> </td> </tr> <tr> <td>gpp_bbp</td> <td>Gross carbon productivity estimated from optical backscatter</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>gpp_bbp_serr</td> <td>Standard error of gross carbon productivity estimated from optical backscatter</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>gop_do_p</td> <td>p-value of curve fit to hourly particulate organic carbon data</td> <td> </td> </tr> <tr> <td>gop_do_r2</td> <td>r-squared value of curve to hourly particulate organic carbon data</td> <td> </td> </tr> <tr> <td>gop_bbp</td> <td>Gross oxygen productivity calculated from gross carbon productivity (gpp_bbp)</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>gop_bbp_serr</td> <td>Standard error of gross oxygen productivity calculated from gross carbon productivity (gpp_bbp_serr)</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>npp_bbp</td> <td>Net primary productivity calculated from backscatter-based gross oxygen productivity (gop_bbp)</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>npp_bbp_serr</td> <td>Standard error of net primary productivity calculated from backscatter-based gross oxygen productivity (gop_bbp_serr)</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>npp_do</td> <td>Net primary productivity calculated from oxygen-based gross oxygen productivity (gop_do)</td> <td>mol m-3 yr-1</td> </tr> <tr> <td>npp_do_serr</td> <td>Standard error of net primary productivity calculated from oxygen-based gross oxygen productivity (gop_do_serr)</td> <td>mol m-3 yr-1</td> </tr> </tbody> </table> <table> </table> Data for Fig. S1 | Description for number_of_bbp_profiles_in_each_year.csv and number_of_oxy_profiles_in_each_year.csv <table><tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>year</td> <td>Year</td> <td> </td> </tr> <tr> <td>bbp470</td> <td>Number of backscatter profiles</td> <td> </td> </tr> <tr> <td>oxygen_anom</td> <td>Number of oxygen profiles</td> <td> </td> </tr> </tbody> </table> <table> </table> <table> <tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>mid_depth</td> <td>Depth of NPP profile</td> <td>m</td> </tr> <tr> <td>mean</td> <td>Mean volumetric 14C-NPP at depth</td> <td>mmol m-3 yr-1</td> </tr> <tr> <td>median</td> <td>Median volumetric 14C-NPP at depth</td> <td>mmol m-3 yr-1</td> </tr> <tr> <td>min</td> <td>Minimum volumetric 14C-NPP at depth</td> <td>mmol m-3 yr-1</td> </tr> <tr> <td>maximum</td> <td>Maximum volumetric 14C-NPP</td> <td>mmol m-3 yr-1</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <table> <tbody><tr> <th><strong>Variable</strong></th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>subset</td> <td>Number of profiles randomly sampled from the co-located dataset</td> <td> </td> </tr> <tr> <td>int_npp_do</td> <td>Euphotic-depth-integrated net primary productivity calculated from oxygen-based gross oxygen productivity</td> <td>mol m-2 y-1</td> </tr> <tr> <td>int_npp_bbp</td> <td>Euphotic-depth-integrated net primary productivity calculated from backscatter-based gross oxygen productivity</td> <td>mol m-2 y-1</td> </tr> <tr> <td>gop_do_r2</td> <td>R-squared of the sinusoidal curve to the diel cycle of oxygen anomaly</td> <td> </td> </tr> <tr> <td>gpp_bbp_r2</td> <td>R-squared of sinusoidal curve to the diel cycle of particulate organic carbon</td> <td> </td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <table> <tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>ROSE</td> <td>Topographic (negative values are below sea level)</td> <td>m</td> </tr> <tr> <td>ETOPO05_Y</td> <td>Latitude</td> <td>degN</td> </tr> <tr> <td>ETOPO05_X</td> <td>Longitude</td> <td>degE</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <table> <tbody><tr> <th>Variable</th> <th>Description</th> <th>Units</th> </tr> </tbody><tbody> <tr> <td>database</td> <td>Database the data was extracted from</td> <td> </td> </tr> <tr> <td>Month</td> <td>Month of NPP measurement</td> <td>month of year</td> </tr> <tr> <td>npp_14c</td> <td>Net primary productivity estimated from the radiocarbon method</td> <td>mmol m-3 y-1</td> </tr> <tr> <td>depth</td> <td>depth of 14C-NPP measurement</td> <td>m</td> </tr> </tbody> </table> <table> </table>
Data presented in the article entitled "Thermoelectric Inks and Power Factor Tunability in Hybrid Films through All Solution Process"
<p>Summary of the data plots presented in the article entitled "Thermoelectric Inks and Power Factor Tunability in Hybrid Films through All Solution Process".</p>
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