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115
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Dataset results
115 results for “regulatory evolution”
The evolution of TF-regulatory network of core C4 metabolic pathway genes in the genus of Flaveria
GEO Series GSE143470. Flaveria ramosissima; Flaveria robusta; Flaveria trinervia; Flaveria sonorensis. 67 samples. Type: Expression profiling by high throughput sequencing.
Evolution at two regulatory levels in yeast
GEO Series GSE50049. Saccharomyces paradoxus; Saccharomyces cerevisiae x Saccharomyces paradoxus; Saccharomyces cerevisiae. 10 samples. Type: Expression profiling by high throughput sequencing.
Giant island mice exhibit widespread gene regulatory evolution in key metabolic organs
GEO Series GSE135007. Mus musculus domesticus. 100 samples. Type: Expression profiling by high throughput sequencing.
Evolution of Context Dependent Regulation by Expansion of Feast/Famine Regulatory Proteins [expression]
GEO Series GSE61975. Halobacterium salinarum NRC-1. 24 samples. Type: Expression profiling by array.
Enhancer divergence and cis-regulatory evolution in the human and chimpanzee neural crest
GEO Series GSE70751. Homo sapiens; Pan troglodytes. 64 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Transposons repressed by H3K27me3 were co-opted as cis-regulatory elements of H3K27me3 controlled protein-coding genes during evolution of plants
GEO Series GSE221635. Marchantia polymorpha; Cyanidioschyzon merolae strain 10D. 26 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptomes combining with consecutive genomics reveal clonal evolution and gene regulatory networks in relapsed and refractory multiple myeloma
GEO Series GSE188632. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Primate-specific Transcription Factors & Cis-Regulatory Elements Regulate Human Developmental Evolution.
GEO Series GSE181120. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb
GEO Series GSE42413. Mus musculus; Macaca mulatta; Homo sapiens. 56 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Evolution of Context Dependent Regulation by Expansion of Feast/Famine Regulatory Proteins [ChIP-chip]
GEO Series GSE62051. Halobacterium salinarum NRC-1. 34 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Reorganization of HoxD regulatory landscapes during the evolution of a snake-like body plan
GEO Series GSE79048. Mus musculus; Pantherophis guttatus. 25 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
The evolution of TF-regulatory network of core C4 metabolic pathway genes in the genus of Flaveria [ABA]
GEO Series GSE137938. Flaveria ramosissima; Flaveria robusta; Flaveria trinervia; Flaveria sonorensis. 8 samples. Type: Expression profiling by high throughput sequencing.
Human gene regulatory evolution is driven by divergence in cis and trans
GEO Series GSE216917. Homo sapiens; Macaca mulatta. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Comparative genomics of the sea urchin P. lividus highlights contrasting trends of genome and regulatory evolution in deuterostomes
GEO Series GSE202034. Paracentrotus lividus. 54 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Conservation of cis-regulatory codes over half a billion years of evolution
GEO Series GSE284136. Gallus gallus; Petromyzon marinus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
The evolution, evolvability, and engineering of gene regulatory DNA [GPRA]
GEO Series GSE163045. Saccharomyces cerevisiae. 36 samples. Type: Other.
Reorganization of HoxD regulatory landscapes during the evolution of a snake-like body plan (ChIP-seq)
GEO Series GSE79047. Mus musculus; Pantherophis guttatus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Data from: Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts
Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms arose early in fungal evolution and became dominant independently in multiple clades, most likely via parallel diversification of Zn-cluster transcription factors, a fungal-specific family involved in regulating yeast–filamentous switches. Our results imply that convergent evolution can happen by the repeated deployment of a conserved genetic toolkit for the same function in distinct clades via regulatory evolution. We suggest that this mechanism might be a common source of evolutionary convergence even at large time scales.
Emergence of Supercoiling-Mediated Regulatory Networks through the Evolution of Bacterial Chromosome Organization: Supplementary Material
<p>Data generated using <a href="https://gitlab.inria.fr/tgrohens/evotsc">EvoTSC</a> and used in the Supplementary Material to the upcoming PLOS computational biology paper.</p>
Descriptive Study of the Evolution in Proportion of Regulatory B Lymphocytes in Patients Hospitalized in Intensive Care for Severe Sepsis
ClinicalTrials.gov study NCT03115125. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.