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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
Relaxed 3D genome conformation facilitates the pluripotent to totipotent-like state transition in embryonic stem cells [ATAC-seq, ChIP-seq, RNA-seq, CUT&Tag]
GEO Series GSE159621. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
RNA-seq for MDCKII 3D and 2D epithelial morphogenesis.
GEO Series GSE129823. Canis lupus familiaris. 29 samples. Type: Expression profiling by high throughput sequencing.
Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription [RNA-Seq]
GEO Series GSE201354. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
3D landscape of Hepatitis B virus interactions with human chromatins [RNA-seq]
GEO Series GSE146498. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [RNA-Seq]
GEO Series GSE95111. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
3D Chromosome Structure Can Reveal Stem Cell Signatures (RNA-Seq)
GEO Series GSE126013. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA sequencing from PiKP-785 cancer cells under 4 treatment conditions: Kras* On, Kras* 3d off, Kras* 5d off, and Kras* On off on
GEO Series GSE201887. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Integrative analysis of 3D nucleome and chromatin accessibility reveals a chromatin barrier established for T-lineage commitment during early T cell development [Dnase-Seq, HiC-Seq, Mnase-Seq, RNA-Seq
GEO Series GSE79422. Mus musculus. 80 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Benzo[a]pyrene and dibenzo[def,p]chrysene in 3D primary human bronchial epithelial cells [RNA-seq]
GEO Series GSE128471. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA seq of long-term 3D culture of mouse primary hepatocytes induced by TNFa
GEO Series GSE120067. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA-seq of 3D Cultured Intestinal Organoids (Ileum and Colon) from Satb2-deficient and WT mice
GEO Series GSE167281. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Large-Scale CRISPR Screening in Primary Human 3D Gastric Organoids Enables Comprehensive Dissection of Gene-Drug Interactions [RNA-seq]
GEO Series GSE280257. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [RNA-seq HaCaT]
GEO Series GSE232041. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [RNA-seq]
GEO Series GSE200691. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [RNA-Seq]
GEO Series GSE143718. Oryza sativa. 16 samples. Type: Expression profiling by high throughput sequencing.
Reorganization of 3D chromatin architecture of rice genomes during heat stress (RNA-Seq)
GEO Series GSE144566. Oryza sativa. 12 samples. Type: Expression profiling by high throughput sequencing.
SATB2 organizes the 3D genome architecture of cognition in cortical neurons [RNA-Seq]
GEO Series GSE244285. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA Sequencing of Wild Type and Cisplatin Induced AKI (3d and 7d groups) Mice Kidneys
GEO Series GSE220674. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells [ChIP-Seq, RNA-seq, Med-Seq]
GEO Series GSE154008. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Elementary 3D organization of active and silenced E. coli genome (RNA-Seq)
GEO Series GSE283264. Escherichia coli. 25 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.