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FIGURE 3 in The trouts of the upper Kura and Aras rivers in Turkey, with description of three new species (Teleostei: Salmonidae)
FIGURE 3. Map of eastern Anatolia showing the distribution of the native Salmo specimens examined for this study.
FIGURE 1 in The trouts of the upper Kura and Aras rivers in Turkey, with description of three new species (Teleostei: Salmonidae)
FIGURE 1. Salmo murathani; Turkey: Kars Prov.: Keklik Stream; a, holotype, FFR 3240, 255 mm SL, male; b, paratype, FFR 3121, 233 mm SL, female; c, FFR 3121, paratype, 120 mm SL, juvenile.
FIGURE 4 in The trouts of the upper Kura and Aras rivers in Turkey, with description of three new species (Teleostei: Salmonidae)
FIGURE 4. Salmo ardahanensis; Turkey: Ardahan Prov.: Toros Stream; a, FFR 3239, holotype, 222 mm SL, male; b, FFR 1130, paratype, 200 mm SL, male; c, FFR 1130, paratype, 253 mm SL, female; d, FFR 1130, paratype, 135 mm SL, juvenile.
Fig. 1 in Morphological specificities of vendace (Salmoniformes: Salmonidae: Coregoninae: Coregonus albula) population in Lake Pleshcheyevo (the Volga River basin): relationships of two phylogenetic lineages in a new zone of secondary contact
Fig. 1 Map of European north of Russia marking the selected sampling location. 1, 2—Lake Goreloye [16] and Lake Bol'shoye Krasnoye [35] (Bol'shoy Solovetsky Island); 3—Lake Beloye [16]; 4—Lake Pleshcheyevo: lineages E [44] and ALBP2 [29]; 5—Lake Vishtynetskoye (Kaliningrad region) [28]. In square brackets, the sample size is shown
Fig. 3 in Morphological specificities of vendace (Salmoniformes: Salmonidae: Coregoninae: Coregonus albula) population in Lake Pleshcheyevo (the Volga River basin): relationships of two phylogenetic lineages in a new zone of secondary contact
Fig. 3 Plots of scores for the first two discriminant functions for size-free morphometric data for six vendace (C. albula) groups. 1—Lake Pleshcheyevo, lineage E; 2—Lake Pleshcheyevo, lineage ALBP2; 3—Lake Goreloye; 4—Lake Bol'shoye Krasnoye; 5—Lake Vishtynetskoye; 6—Lake Beloye. 95% confidence ellipses are shown
Data from: Maternal and paternal contributions to pathogen resistance dependent on development stage in a whitefish (Salmonidae)
1. It is often assumed that maternal and paternal contributions to offspring phenotype change over the lifetime of an individual. However, studies on parental effects typically suffer from the problems that heritabilities and maternal environmental effects are difficult to separate, and that both may depend on environmental factors and developmental stage 2. In order to experimentally disentangle maternal from paternal contributions and the likely effects of developmental stage from ecological effects, we sampled a natural population of the whitefish Coregonus palaea, used gametes for full-factorial in vitro fertilizations, raised over 10,000 of the resulting offspring singly at controlled conditions, and exposed them at different points during embryonic development to one of two strains of Pseudomonas fluorescens that differed in their virulence characteristics (only one caused mortality, while both delayed hatching and reduced growth) 3. Vulnerability to infection increased markedly over embryo development. This change coincided with a distinct shift in the importance of maternal to additive genetic effects on survival. Timing of exposure also affected the variance components for hatching time and larval length, but in a less consistent direction than the variance components for mortality. No significant genetic variation was found for any reaction norms across time points of exposure, indicating a uniformity among genotypes in how susceptibility changed over development. Phenotypes were also typically correlated across time points, which could constrain the evolution of the reaction norms 4. Our experiment demonstrates that the relative maternal and paternal contributions to susceptibility to an infection, and hence the evolutionary potential to respond to pathogen-induced selection, depends not only on the kind of pathogenic stress but also on the timing of the challenge.
FIGURE 7 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 7. Phylogenetic network of individuals examined in this study produced by the neighbor net algorithm. Tips are labeled by individual codes described in Table 1. Each subspecies of Rainbow Trout (Oncorhynchus mykiss) is indicated. McCloud River Redband Trout (O. m. calisulat, ssp. nov.) and Sacramento River Redband Trout (O. m. stonei) are show in bold. The outgroup species, Lahontan Cutthroat Trout (O. clarkii henshawi) is indicated.
FIGURE 3 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 3. Admixture plots from the population genetics data set. Number of genetic clusters (K) presented for K = 2–6 from all samples (n = 318) analyzed in a population genetics framework. Admixture analysis was conducted in NGSAdmix with an optimal K = 3. Labeling of x-axis is according to Group as in Table 1: CAGT, California Golden Trout; KRRT, Kern River Rainbow Trout; LKGT, Little Kern Golden Trout; CRT, Coastal Rainbow Trout; EGLK, Eagle Lake Rainbow Trout; HRNB, Hatchery Rainbow Trout; MRRB, McCloud River Redband Trout; REDB, all other Redband Trout.
FIGURE 6 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 6. Species tree produced by SVDQuartets. The species tree branch lengths are equal and bootstrap support was maximal for all nodes and not shown. Each subspecies of Rainbow Trout (Oncorhynchus mykiss) is indicated with McCloud River Redband Trout (O. m. calisulat, ssp. nov.) and Sacramento Redband Trout (O. m. stonei) in bold text. For Rainbow Trout subspecies, sampling locations are labeled with a four-letter code corresponding to Figure 1 and Table 1. The two samples of Lahontan Cutthroat Trout (O. clarkii henshawi) are labeled as LCT.
FIGURE 2 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 2. Principal Component Analyses. The first two Principal Components (PCs) are presented for all samples (n = 318) in the population genetics analysis in A and Redband Trout samples (n = 204) in B. Genotype likelihoods were generated separately for the PCs presented in each panel. In A points are color coded by Group corresponding broadly to lineage, and further condensed into a Major Group by consolidating the California Golden Trout Complex and represented by shape (Table 1). In B, points are colored by watershed and the same shape applied to the Major Group (MRRB and REDB). Abbreviations for Major Group are explained in the text.
FIGURE 1 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 1. Map of key features and distributions of key lineages in this study. The distribution of Coastal Rainbow Trout (Oncorhynchus mykiss irideus) is shown in grey shading. Other lineages are labeled in different colors. Distributions were retrieved from the PISCES database (pisces.ucdavis.edu, "Historic Range—Expert Opinion") except for Warner Lakes Redband Trout (O. m. ssp.), which is represented by a polygon of hydrologic unit code (HUC) 17120007. Sampling locations used in phylogenetic analyses are indicated with a four-letter code that corresponds to Table 1 and Supplemental Table S1. Samples of O. m. gairdnerii from Idaho are not shown.
FIGURE 5 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 5. Maximum Likelihood (ML) tree (A) and ML consensus tree (B). In both panels subspecies of Rainbow Trout (Oncorhynchus mykiss) are indicated along with members of the Golden Trout Complex. McCloud River Redband Trout (O. m. calisulat, ssp. nov.) and Sacramento Redband Trout (O. m. stonei) are indicated with bold text. Individual sample names are provided at tips and further described in Table 1. In 5A, nodes receiving Shimodaira-Hasegawa approximate Likelihood Ratio Test scores> 80 and bootstrap support (BS)> 95% are indicated with a diamond. In 5B, two spans of bootstrap support are presented, with 100%> BS> 95% as solid black circles and 95%> BS> 90% as grey circles at nodes.
FIGURE 8 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 8. McCloud River Redband Trout, Onchorhynchus mykiss calisulat, ssp. nov., Sheepheaven Creek. A. WFB 5020, holotype, 120 mm SL. B. same specimen as in A, radiograph. C. TCWC 28772.01, paratype, 144 mm SL. D. Illustration of O. m. calisulat, ssp. nov., showing life colors, © J. Tomelleri, used with permission.
FIGURE 4 in Molecular Systematics of Redband Trout from Genome-Wide DNA Sequencing Substantiates the Description of a New Taxon (Salmonidae: Oncorhynchus mykiss calisulat) from the McCloud River
FIGURE 4. Admixture plots from McCloud river trout and other Redband Trout in population genetics dataset. Admixture results from NGSAdmix for genetic clusters (K) from 2-4 with the subset of samples collected as Redband Trout. Sample size of 204, optimal K = 2. The x-axis labels are labeled according to watershed.
Data from: The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing
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Data from: MHC class I expression dependent on bacterial infection and parental factors in whitefish embryos (Salmonidae)
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Data from: Sex differentiation in grayling (Salmonidae) goes through an all-male stage and is delayed in genetic males who instead grow faster
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Data from: Genetic correlations and little genetic variance for reaction norms may limit potential for adaptation to pollution by ionic and nanoparticulate silver in a whitefish (Salmonidae)
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Data from: Additive genetic variation for tolerance to estrogen pollution in natural populations of Alpine whitefish (Coregonus sp., Salmonidae)
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Data from: Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae)
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