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102
datasets available to search
ShareScore release 0.9.0
Dataset results
102 results for “spatial imaging”
Assessment of Revascularization in Plantar Foot of Diabetic Patients Pre and Post Angioplasty Using Spatial Frequency Domain Imaging
ClinicalTrials.gov study NCT07097857. IPD Sharing: NO. Countries: 1. Publications: 1.
IF and SCRINSHOT image data of probe set selection for targeted spatial transcriptomics
Open the record for dataset details and reuse information.
Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy
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HDCA fetal lung spatial proteomics images
<p>The images provided in this repository is published alongside <a href="https://doi.org/10.1101/2024.01.25.577163" target="_blank" rel="noopener noreferrer">this preprint</a> and <a href="https://github.com/CellProfiling/HDCA-FetalLung-SpatialProteomics" target="_blank" rel="noopener noreferrer">this code repository</a>. The preprint and github repository provide further metadata and analysis information. When using the images in this repository, please cite the preprint under DOI: <a href="https://doi.org/10.1101/2024.01.25.577163" target="_blank" rel="noopener noreferrer">https://doi.org/10.1101/2024.01.25.577163</a>.<span> </span></p>
Raw Image Data Repository: Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics
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Figure 2 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 2 - Virtual configurations used for software validation. Virtual configurations used to compile the data presented in the Table 1. Part 2.8 is one of the 10 replicates obtained with a random distribution. All other configurations have been designed in order to reach the desired level of aggregation and affinity between groups. The filled and empty shapes represented two virtual groups in the population.
Figure 1 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 1 - Flow chart of the creation of a new NEIGHBOUR-IN file. This figure presents the different steps in the creation of a new file, from the importation of the snapshot to the calculation of the statistics of dispersion.
Figure 4 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 4 - Spatial distribution in woodlice. Graphic outputs of spatial distribution patterns obtained in three configurations with monospecific or bispecific populations including two groups of eight individuals: a PD-PD: The two groups are Porcellio dilatatus (red and green) b PD-PS: Porcellio dilatatus (red) and Porcellio scaber (green) c PD-AV: Porcellio dilatatus (red) and Armadillidium vulgare (green). The outputs show 64 cells. Each cell is represented with a colour corresponding to the individual(s) in that cell. The colour is mixed using green and red proportional to the number of green and red individuals. If the cell is empty, the colour is black. The intensity of the colour reflects the number of individuals. The position of the individual is determined by its point G (centre-point).
Figure 3 from: Caubet Y, Richard F-J (2015) NEIGHBOUR-IN: Image processing software for spatial analysis of animal grouping. In: Taiti S, Hornung E, Štrus J, Bouchon D (Eds) Trends in Terrestrial Isopod Biology. ZooKeys 515: 173–189. https://doi.org/10.3897/zookeys.515.9390
Figure 3 - Aggregation heterogeneity in woodlice. Aggregation patterns of two groups of woodlice illustrating the Aggregation Heterogenity Index (AHI) and the Spatial Mixed Index (SMI). PD: Porcellio dilatatus, PS: Porcellio scaber, CC: Cylisticus convexus. Values of indexes: PD-PD: AHI=0.93 & SMI=0.80; PD-PS: AHI=0.67 & SMI=0.60; PD-CC: AHI=0.63 & SMI=0.33.
Supplementary animation file for INSPIRE: Intensity and spatial information-based deformable image registration
<p>Illustrative animation of the INSPIRE registration method applied to a retinal image.</p>
Data for "Characterization of Intact Eukaryotic Cells with Subcellular Spatial Resolution by Photothermal-Induced Resonance Infrared Spectroscopy and Imaging"
<p>Dataset used for the article "Characterization of Intact Eukaryotic Cells with Subcellular Spatial Resolution by Photothermal-Induced Resonance Infrared Spectroscopy and Imaging" Molecules 2019, 24, 4504; doi:10.3390/molecules24244504</p>
Fig. 3 in Visualizing the spatial distribution of metabolites in Clausena lansium (Lour.) skeels using matrix-assisted laser desorption/ionization mass spectrometry imaging
Fig. 3. MALDI-MS spectrum of C. lansium fruit extract in positive ion mode.
Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [CosMx]
GEO Series GSE299786. Homo sapiens. 4 samples. Type: Other.
Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium]
GEO Series GSE300007. Homo sapiens. 6 samples. Type: Other.
An image-based transcriptomic atlas of the mouse gut reveals spatial, regional, and microbiota-dependent fine-tuning
GEO Series GSE297799. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
STAMP: Single-Cell Transcriptomics Analysis and Multimodal Profiling through Imaging [CosMx Spatial]
GEO Series GSE290466. Homo sapiens. 92 samples. Type: Other.
Integration of spatial protein imaging and transcriptomics in the human kidney tracks the regenerative potential of proximal tubules
GEO Series GSE298953. Homo sapiens. 1 samples. Type: Other.
Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data
GEO Series GSE308148. Homo sapiens. 8 samples. Type: Other.
Spatial Touchstone: A Comprehensive Assessment of Imaging-Based Spatial Transcriptomics, Reproducibility and Best Practices
GEO Series GSE277080. Homo sapiens. 38 samples. Type: Other.
Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - CosMx Data
GEO Series GSE308146. Homo sapiens. 4 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.