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118
datasets available to search
ShareScore release 0.9.0
Dataset results
118 results for “streamlines”
Valar: Streamlining Alarm Ranking in Static Analysis with Value-Flow Assisted Active Learning
<p>static analysis alarm dataset</p>
Fig. 5 in Streamlined targeting of Amaryllidaceae alkaloids from the bulbs of Crinum scillifolium using spectrometric and taxonomically-informed scoring metabolite annotations
Fig. 5. Comparison of the experimental ECD spectra of 2 and calculated ECD spectra for stereoisomer of 2 shown in Fig. 2.
Fig. 1. Overall molecular network obtained from MZmine2 in Streamlined targeting of Amaryllidaceae alkaloids from the bulbs of Crinum scillifolium using spectrometric and taxonomically-informed scoring metabolite annotations
Fig. 1. Overall molecular network obtained from MZmine2-preprocessed HPLC-MS2 data of C. scillifolium bulbs crude alkaloid extract and first chromatographic fractions. Triangle-shaped nodes are tentatively-tagged against ISDB and benefit from a taxonomical re-ranking of the tentative candidates (their structures are provided in Fig. S1, Supporting Information). Nodes highlighted in orange correspond to the targeted structures (1–4) in the phytochemical workflow. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4 in Streamlined targeting of Amaryllidaceae alkaloids from the bulbs of Crinum scillifolium using spectrometric and taxonomically-informed scoring metabolite annotations
Fig. 4. Comparison of the experimental ECD spectrum of 1 and calculated ECD spectrum for the (3S, 4aS, 10bS, 11S) enantiomer.
Point-of-care Viral Load Testing to Enable Streamlined Care and Task Shifting for Chronic HIV Care
ClinicalTrials.gov study NCT03066128. IPD Sharing: YES. Countries: 1. Publications: 7.
The "START" (a Streamlined ART Initiation Strategy) Study
ClinicalTrials.gov study NCT01810289. IPD Sharing: Not stated. Countries: 0. Publications: 2.
Streamlined Geriatric and Oncological Evaluation Based On IC Technology
ClinicalTrials.gov study NCT05720910. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Efficacy of a Streamlined Heart Failure Optimization Protocol
ClinicalTrials.gov study NCT05021419. IPD Sharing: NO. Countries: 1. Publications: 4.
Streamlined Treatment of Pulmonary Exacerbations in Pediatrics Pilot Study
ClinicalTrials.gov study NCT04608019. IPD Sharing: NO. Countries: 1. Publications: 2.
Streamlining the Efficiency of PrEP Implementation
ClinicalTrials.gov study NCT04424524. IPD Sharing: YES. Countries: 1. Publications: 2.
Streamlining Radioembolization for Small HCC
ClinicalTrials.gov study NCT06979219. IPD Sharing: NO. Countries: 1. Publications: 0.
A Protocol to Streamline Dental Care in Autistic Children
ClinicalTrials.gov study NCT05553262. IPD Sharing: NO. Countries: 1. Publications: 5.
PrEParing Family Planning Clinics to Streamline Integration of HIV Prevention Services for Young Women in Kenya
ClinicalTrials.gov study NCT04666792. IPD Sharing: NO. Countries: 1. Publications: 1.
Heating Precondition of Streamlined Liner of the Pharynx Airway Decrease the Incidence of Sore Throat
ClinicalTrials.gov study NCT02539485. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Streamlined Treatment of Pulmonary Exacerbations in Pediatrics
ClinicalTrials.gov study NCT06654752. IPD Sharing: NO. Countries: 2. Publications: 1.
Streamlined Genetic Testing in Prostate Cancer
ClinicalTrials.gov study NCT04359758. IPD Sharing: YES. Countries: 1. Publications: 0.
MEDI: Macronutrient Extraction and Determination from Invertebrates, a rapid, cheap and streamlined protocol
Open the record for dataset details and reuse information.
Data from: BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction
Next Generation Sequencing (NGS) is driving rapid advancement in biological understanding and RNA-sequencing (RNA-seq) has become an indispensable tool for biology and medicine. There is a growing need for access to these technologies although preparation of NGS libraries remains a bottleneck to wider adoption. Here we report a novel method for the production of strand specific RNA-seq libraries utilizing inherent properties of double-stranded cDNA to capture and incorporate a sequencing adapter. Breath Adapter Directional sequencing (BrAD-seq) reduces sample handling and requires far fewer enzymatic steps than most available methods to produce high quality strand-specific RNA-seq libraries. The method we present is optimized for 3-prime Digital Gene Expression (DGE) libraries and can easily extend to full transcript coverage shotgun (SHO) type strand-specific libraries and is modularized to accommodate a diversity of RNA and DNA input materials. BrAD-seq offers a highly streamlined and inexpensive option for RNA-seq libraries.
A Streamlined and High-Throughput Error-Corrected Next-Generation Sequencing Method for Low Variant Allele Frequency Quantitation
<p></p><p>Quantifying mutant or variable allele frequencies (VAFs) of ≤10−3 using next-generation sequencing (NGS) has utility in both clinical and nonclinical settings. Two common approaches for quantifying VAFs using NGS are tagged single-strand sequencing and duplex sequencing. While duplex sequencing is reported to have sensitivity up to 10−8 VAF, it is not a quick, easy, or inexpensive method. We report a method for quantifying VAFs that are ≥10−4 that is as easy and quick for processing samples as standard sequencing kits, yet less expensive than the kits. The method was developed using PCR fragment-based VAFs of Kras codon 12 in log10 increments from 10−5 to 10−1, then applied and tested on native genomic DNA. For both sources of DNA, there is a proportional increase in the observed VAF to input VAF from 10−4 to 100% mutant samples. Variability of quantitation was evaluated within experimental replicates and shown to be consistent across sample preparations. The error at each successive base read was evaluated to determine if there is a limit of read length for quantitation of ≥10−4, and it was determined that read lengths up to 70 bases are reliable for quantitation. The method described here is adaptable to various oncogene or tumor suppressor gene targets, with the potential to implement multiplexing at the initial tagging step. While easy to perform manually, it is also suited for robotic handling and batch processing of samples, facilitating detection and quantitation of genetic carcinogenic biomarkers before tumor formation or in normal-appearing tissue.</p><p></p>
Figure 1 from: Blagoderov V, Brake I, Georgiev T, Penev L, Roberts D, Ryrcroft S, Scott B, Agosti D, Catapano T, Smith V (2010) Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys. ZooKeys 50: 17-28. https://doi.org/10.3897/zookeys.50.539
Figure 1 - Typical taxon page on the Scratchpad showing components (taxon description, images, bibliographic references) used in preparation of a publication.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.