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58 results for “taxonomic inference”
FIGURE 3 in Taxonomic status of Euzonitis haroldi (Heyden, 1870) (Coleoptera: Meloidae) inferred from morphological and molecular data
FIGURE 3. Male genitalia of E. quadrimaculata (Torrelaguna, Madrid, Spain): a: tegmen, lateral view; b: tegmen, dorsal view; c: tegmen, ventral view; d: median lobe, lateral view; e: median lobe, ventral view; f: median lobe, dorsal view. Scale bar = 0.5 mm (J. L. Ruiz del.).
FIGURE 6 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 6. Maximum parsimony phylogenies from the analysis based on cyt b sequences. Above the nodes are MP bootstrap values (>50%), ML bootstrap values (>50%), and ME bootstrap values (>50%), from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%.
FIGURE 9 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 9. Maximum parsimony phylogenies from the analysis based on the combined data (COI, 16S rRNA and 28S rRNA gene sequences). Above the nodes are MP bootstrap values (>50%), ML bootstrap values (>50%), and ME bootstrap values (>50%), from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%.
FIGURES 1–5. Relationship between K2P in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURES 1–5. Relationship between K2P+Γ distances and uncorrected pairwise sequence distances for each gene partition. 1. Scatter plot graphic for third positions of COI; 2. COI; 3. cyt b; 4. 16S rRNA; 5. 28S rRNA.
FIGURE 8 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 8. Maximum likelihood phylogram based on combined data (16S rRNA and 28S rRNA gene sequences). The topology was reconstructed under the TVM + I + G model of nucleotide substitution, -log likelihood = 2660.77. Above the nodes are bootstrap support values derived from MP, ML and ME analysis, from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%. All unambiguous morphological characters used in this study are mapped on this topology and are indicated on the right.
FIGURE 10 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 10. Maximum parsimony phylogram based on combined cyt b, COI, 16S rRNA and 28S rRNA gene sequences (length = 1398, CI = 0.631, and RI = 0.443). Above the nodes are bootstrap support values derived from MP, ML and ME analysis, from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%. All unambiguous morphological characters used in this study are mapped on this topology and are indicated on the right.
FIGURE 7 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 7. Phylogenetic tree of Coranus Curtis based on COI gene (K2P model) using distance method (minimum evolution). Bootstrap values (1000 replications) are shown above nodes.
Figure 2. Bayesian inference tree inferred from Dataset2 in First molecular phylogeny of the freshwater planarian genus Girardia (Platyhelminthes: Tricladida) unveils hidden taxonomic diversity and initiates resolution of its historical biogeography
Figure 2. Bayesian inference tree inferred from Dataset2 (COI with outgroup). Clades C to R have been collapsed for the sake of clarity. Clade A comprises unclassified samples from Mexico and Texas (USA); Clade B includes identified individuals of Girardia schubarti from Brazil and other unidentified Brazilian individuals. The outgroup (unlabelled lower clade) is composed of several representatives of genera Dugesia and Schmidtea downloaded from GenBank (Appendix). Values at nodes correspond to posterior probability. Scale bar: number of substitutions per nucleotide position.
Supplementary material 2 from: Dagallier L-PMJ, Mbago FM, Couderc M, Gaudeul M, Grall A, Loup C, Wieringa JJ, Sonké B, Couvreur TLP (2023) Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis. PhytoKeys 233: 1-200. https://doi.org/10.3897/phytokeys.233.103096
RAxML maximum likelihood tree of the Monodoreae, based on a concatenated supermatrix of 334 nuclear genes. Bootstrap support values (in %) are given at the nodes
Data from: The assembly of ecological communities inferred from taxonomic and functional composition
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Data from: Taxonomic reassessment of Clevosaurus latidens Fraser, 1993 (Lepidosauria, Rhynchocephalia) and rhynchocephalian phylogeny based on parsimony and Bayesian inference
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Data from: Phylogeography of willow grouse (Lagopus lagopus) in the Arctic: taxonomic discordance as inferred from molecular data
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Supplementary material 3 from: Dagallier L-PMJ, Mbago FM, Couderc M, Gaudeul M, Grall A, Loup C, Wieringa JJ, Sonké B, Couvreur TLP (2023) Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis. PhytoKeys 233: 1-200. https://doi.org/10.3897/phytokeys.233.103096
Details of the vouchers used in this study.
Supplementary material 4 from: Dagallier L-PMJ, Mbago FM, Couderc M, Gaudeul M, Grall A, Loup C, Wieringa JJ, Sonké B, Couvreur TLP (2023) Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis. PhytoKeys 233: 1-200. https://doi.org/10.3897/phytokeys.233.103096
Details of the specimens examined in this study.
Supplementary material 1 from: Dagallier L-PMJ, Mbago FM, Couderc M, Gaudeul M, Grall A, Loup C, Wieringa JJ, Sonké B, Couvreur TLP (2023) Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis. PhytoKeys 233: 1-200. https://doi.org/10.3897/phytokeys.233.103096
Phylogenetic tree of the Monodoreae inferred with ASTRAL, based on 334 nuclear genes trees
Fig. 3 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 3. Plot of genetic distance given as ΦST/(1- ΦST) versus geographical distance for pairwise population comparisons of Rhinolophus ferrumequinum from Iran.
Fig. 1 in Taxonomic Evaluation of the Greater Horseshoe Bat Rhinolophus ferrumequinum (Chiroptera: Rhinolophidae) in Iran Inferred from the Mitochondrial D-loop Gene
Fig. 1. Map of Iran showing sampling localities of Rhinolophus ferrumequinum used in this study. Locality codes are the same as Supplementary Table S1 online. Red circles conform to the clade 1- subclade A and yellow circles conform to the clade 1- subclade B in Figs. 2, 4.
Figure 3. Bayesian inference tree inferred from Dataset5 in First molecular phylogeny of the freshwater planarian genus Girardia (Platyhelminthes: Tricladida) unveils hidden taxonomic diversity and initiates resolution of its historical biogeography
Figure 3. Bayesian inference tree inferred from Dataset5 (concatenated no outgroup). Different groups indicated by letters and colours. A, schematic representation of the tree with collapsed clades (triangles) and singletons (rectangles) showing species identifications, when available, and countries of origin of the various terminals. The relationships between groups
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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