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61
datasets available to search
ShareScore release 0.9.0
Dataset results
61 results for “variant calling”
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
GEO Series GSE25893. Homo sapiens. 385 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array; Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni1-Quad)
GEO Series GSE28104. Homo sapiens. 36 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (WGTP)
GEO Series GSE28189. Homo sapiens. 18 samples. Type: Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (244A)
GEO Series GSE28114. Homo sapiens. 18 samples. Type: Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 2.1M)
GEO Series GSE30312. Homo sapiens. 33 samples. Type: Genome variation profiling by genome tiling array.
satmut_utils: a simulation and variant calling package for multiplexed assays of variant effect
GEO Series GSE201057. Homo sapiens; unidentified plasmid. 22 samples. Type: Other.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (2X244K)
GEO Series GSE28187. Homo sapiens. 72 samples. Type: Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Illumina_650Y)
GEO Series GSE28102. Homo sapiens. 18 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 720K)
GEO Series GSE30307. Homo sapiens. 18 samples. Type: Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni2.5-Quad)
GEO Series GSE28101. Homo sapiens. 14 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
scAllele variant calls and linkage events
<p>Variant calls (*.vcf.gz) and linkage events (*.mi_summary.tab) from</p> <p>- GM12878 cells</p> <p>- iPSC cells (individuals NA19098, NA19101, NA19239)</p> <p>- Lung cancer cells (individuals TH238 and TH179)</p>
Supplemental Material for "Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)"
<p>Supplemental materials to the manuscript.</p>
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human660W-Quad)
GEO Series GSE28103. Homo sapiens. 36 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human1Mv1_C)
GEO Series GSE28092. Homo sapiens. 36 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (1X1M)
GEO Series GSE28112. Homo sapiens. 36 samples. Type: Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (GenomeWideSNP_6)
GEO Series GSE28111. Homo sapiens. 36 samples. Type: Genome variation profiling by SNP array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Mapping250K_Nsp)
GEO Series GSE28105. Homo sapiens. 14 samples. Type: Genome variation profiling by SNP array.
Comparison of variant calling pipelines using Illumina CanineHD BeadChip array as the truth dataset
GEO Series GSE117010. Canis lupus familiaris. 7 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Benchmarking Bulk and Single-cell Variant Calling Approaches on Chromium scRNA-seq and scATAC-seq Libraries
GEO Series GSE213503. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Variant calls, first batch of colonic polyps
<p>From the Halberg/Pickhardt/Grady/Newton et al project, we have whole-exome data on 32 colonic polyps. The raw .fastq files were processed by Zijian Ni to variant calls, which record numbers of variants per gene and sample (snp's, indels),</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.