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1,085 results for “Documentation”
New tree‐level temperature response curves document sensitivity of tree growth to high temperatures across a US‐wide climatic gradient
<p>Temperature is a key climate indicator, whose distribution is expected to shift right in a warming world. However, the high temperature tolerance of trees is less widely understood than their drought tolerance, especially when it comes to sub-lethal impacts of temperature on tree growth. I use a large data set of annual tree ring widths, combined with a flexible degree-day model, to estimate the relationship between temperature and tree radial growth. I find that tree radial growth responds non-linearly to temperature across many ecoregions of the US: across temperate and/or dry ecoregions, spring-summer temperature increases are beneficial or mostly neutral for tree growth up to around 25-30°C in humid climates and 10-15°C in dry climates, beyond which temperature increases suppress growth. Thirty additional degree-days above the optimal temperature breakpoint lead to an average decrease in tree ring width of around 1-5%, depending on ecoregions, seasons, and inclusion or exclusion of temperature-mediated drought impacts. High temperatures have legacy effects across a 5-year horizon in dry ecoregions, but none in the temperate-humid South-East or among temperature-sensitive trees. I find limited evidence that trees acclimatize to high temperatures within their lifetime: local variation in exposure to high temperatures, which stems from local variation in the timing of tree birth, does not significantly impact the response to high temperatures, although temperature-sensitive trees acquire some heightened sensitivity from early exposure. I also find some evidence that trees adapt to high temperatures in the long-run: across humid ecoregions of the US, high temperatures are 40% less harmful to tree growth, where their average incidence is one standard deviation above average. Overall, these results highlight the strength of a new methodology which, applied to representative tree ring data, could contribute to predicting forest carbon uptake potential and composition under global change.</p>
Supplemental documents for: Temperature-associated selection linked to putative chromosomal inversions in king scallop (Pecten maximus)
<p>The genomic landscape of divergence – the distribution of differences among populations or species across the genome – is increasingly characterized to understand the role that microevolutionary forces such as natural selection and recombination play in causing and maintaining genetic divergence. This line of inquiry has also revealed chromosome structure variation to be an important factor shaping the landscape of adaptive genetic variation. Due to a high prevalence of chromosome structure variation and the strong pressure for local adaptation necessitated by their sessile nature, bivalve molluscs are an ideal taxon for exploring the relationship between chromosome structure variation and local adaptation. Here, we report a population genomic survey of king scallop (<em>Pecten</em> <em>maximus</em>) across its natural range in the northeastern Atlantic Ocean, utilizing a recent chromosome-level genome assembly. We report the presence of at least three large (12-22 Mb), putative chromosomal inversions associated with sea surface temperature and whose frequencies are in contrast to neutral population structure. These results highlight a potentially large role for recombination-suppressing chromosomal inversions in local adaptation and suggest a hypothesis to explain the maintenance of differences in reproductive timing found at relatively small spatial scales across king scallop populations.</p>
FIGURES 18–21 in The spider genus Austrochilus Gertsch & Zapfe, 1955 (Araneae: Austrochilidae) - a new species from Chile and a documentation of the male genitalia of austrochilines
FIGURES 18–21. Austrochilus spp. (18, holotype, AMNH; 19, ZIMG II-28330) and Thaida spp. (20, ZIMG II-28126; 21, holotype, ZMB 3802), male genitalia, line draWings depict the tip of the tegulum of the respectiVe species: left, prolateral VieWs; right, retrolateral VieWs (Scale bar 1 mm). E = embolus, mA = median apophysis, PSt = process of subtegulum, St = subtegulum.
FIGURES 4–6 in The spider genus Austrochilus Gertsch & Zapfe, 1955 (Araneae: Austrochilidae) - a new species from Chile and a documentation of the male genitalia of austrochilines
FIGURES 4–6. Austrochilus parwis sp. n., male genitalia (holotype, MNHNC-8020). 4, Prolateral VieW, arroWhead indicates dorsal hump of subtegulum, arroW points to the opening of spermophor, inset shoWs a feathered hair; 5, Ventral VieW; 6, retrolateral VieW. Scale bar 1 mm. Cy = cymbium, E = embolus, HSt = hook of subtegulum, mA = median apophysis, mH = median hematodochae, PSt = process of subtegulum, St = subtegulum, Te = tegulum.
FIGURES 1–3 in The spider genus Austrochilus Gertsch & Zapfe, 1955 (Araneae: Austrochilidae) - a new species from Chile and a documentation of the male genitalia of austrochilines
FIGURES 1–3. Austrochilus parwis sp. n. 1, Habitus of female paratype (ZIMG II-28328), arroWhead points to scape (scale bar 1 mm); 2–3, frontal VieW of eyes and clypeus (2, female; 3, subadult male) (scale bar 0.5 mm).
FIGURES 14–17 in The spider genus Austrochilus Gertsch & Zapfe, 1955 (Araneae: Austrochilidae) - a new species from Chile and a documentation of the male genitalia of austrochilines
FIGURES 14–17. Austrochilus spp., male genitalia (holotypes, AMNH), line draWings depict the tip of the tegulum of the respectiVe species: left, prolateral VieWs; right, retrolateral VieWs. Scale bar 1 mm. E = embolus, mA = median apophysis, PSt = process of subtegulum, St = subtegulum, Te = tegulum.
FIGURES 7–13 in The spider genus Austrochilus Gertsch & Zapfe, 1955 (Araneae: Austrochilidae) - a new species from Chile and a documentation of the male genitalia of austrochilines
FIGURES 7–13. Austrochilus parwis sp. n., female genitalia (paratype, ZIMG II-28327). 7, Ventral VieW, arroWhead points to cuticular fold (scale bar 0.5 mm); 8, posterior VieW; 9, dorsal VieW, digested, edges of the lateral lobes and uterus externus digitally enhanced; 10, dorsal VieW, digested and cleared (scale bar 0.25 mm); 11, Virtual sagittal section shoWing the general internal organization, arroWhead points to cuticular fold; 12–13, Virtual horizontal sections as indicated in Figure 11, shoWing extension of the anterior lobe and the connection of the lateral lobes to the anterior lobe (asterisks). aL = anterior lobe, aP = anterior plate, BL = book lung, GO = genital opening, EF = epigastric furroW, LL = lateral lobe, PF = posterior fold, Sc = scape, UE = uterus externus.
Imasi Documents: Tagore Songs in Manipuri
<p>Translations of Tagore songs by MK Binodini Devi, Maibam Haricharan, RK Surendrajit, and Ayekpam Shyamsundar Singh, performed by Roop Raag. Binodini translated 28 of these songs written and composed by Rabindranath Tagore from the original Bangla.</p> <p>The singers are Khun Joykumar, Birkumar, Swamikumar, Usharani, Nandeswari, Praneswari, and Pushparani, </p> <p>The arrangement of Tagore's original compositions is by Roop Raag, the arts group of which MK Binodini Devi was a founding member and a past President. The group, gathered in her home and their modern theater, dance, and music brought about a culture renaissance in the early 1960s that was the nucleus of a Manipuri modernism. Its artists went on to establish radio and film in Manipur.</p>
Datasets for "Reading Order Independent Metrics for Information Extraction in Handwritten Documents"
<p>This repository includes the five datasets used for our paper entitled <em>Reading Order Independent Metrics for Information Extraction in Handwritten Documents</em>, in which we compare various metrics to evaluate end-to-end information extraction from scanned documents.</p> <h2>Datasets</h2> <p>Five datasets are released following the BIO format:</p> <ul> <li>IAM</li> <li>Simara</li> <li>POPP</li> <li>Esposalles</li> <li>French Military Records</li> </ul> <p>For each dataset, we provide the following data (on test sets):</p> <ul> <li>Ground truth annotations (<code>gt/</code>)</li> <li>Automatic predictions (<code>dan/</code>)</li> <li>Automatic predictions with entities appearing in random order (<code>dan_shuffled/</code>)</li> </ul> <p>The data is organized as follows:</p> <p><code>├── Dataset name/</code><br><code>│ ├── gt/</code><br><code>│ ├── dan/</code><br><code>│ └── dan_shuffled/</code></p> <h2>Metrics</h2> <p>To install the <a href="https://pypi.org/project/ie-eval/"><code>ie-eval</code></a> package, run <code>pip install ie-eval</code>.</p> <p>To compute all metrics on a specific dataset, run:<br><br><code>ie-eval all --label-dir IAM_paragraph/gt/ --prediction-dir IAM_paragraph/dan/</code><br><br></p> <p>To learn more about the various options, use the <code>--help</code> argument or read the <a href="https://ie-eval-ner-metrics-050f40e80b04480e2310d39ad338de778f6bec80e18.pages.teklia.com/">documentation</a>.</p> <p> </p>
MFMET A3.2.7 Documented example of surface roughness measurements
<p><span>Supplementary material to MFMET A3.2.7 Documented example of surface roughness measurements<br></span></p>
Documents - scientific production in telecommunications
Open the record for dataset details and reuse information.
Assisted Data Annotation for Business Process Information Extraction from Textual Documents
Open the record for dataset details and reuse information.
Cryptologue Arcade - Crypto Darkpaper - Crypto Color Prints - Simplementation Scheme : A Color-Coded Method For Indexing Research and Documentation
<p>Crypto Color Prints are a memorable and data-dense documentation paradigm with a color-coded, structural scheme. The scheme forms a simple framework for publishing and improving primitives and protocols with a focus on both cooperation and implementation.</p>
Crosslingual Document Embedding as Reduced-Rank Ridge Regression (Cr5)
<p>Crosslingual Document Embedding as Reduced-Rank Ridge Regression (Cr5)</p> <p>This repository contains the dataset of pretrained word embeddings in 28 languages, embedded in a shared latent space, released with the following <a href="http://dl.acm.org/authorize?N676969">paper</a>. The embeddings trained with the proposed approach are optimized for document level aggregation.</p> <blockquote> <p>"Crosslingual Document Embedding as Reduced-Rank Ridge Regression". Proceedings of the Twelfth ACM International Conference on Web Search and Data Mining. ACM, 2019.</p> </blockquote> <p>If you found the provided resources useful, please cite the above paper. Here's a BibTeX entry you may use:</p> <blockquote> <p>@inproceedings{josifoski-wsdm2019-cr5,<br> title={Crosslingual Document Embedding as Reduced-Rank Ridge Regression},<br> author={Josifoski, Martin and Paskov, Ivan S. and Paskov, Hristo S. and Jaggi, Martin and West, Robert},<br> booktitle={Proceedings of the Twelfth ACM International Conference on Web Search and Data Mining},<br> organization={ACM},<br> year={2019}<br> }</p> </blockquote> <p><br> Any questions or suggestions?<br> Contact martin.josifoski@epfl.ch. </p>
Crosslingual Document Embedding as Reduced-Rank Ridge Regression (Cr5)
<p>Crosslingual Document Embedding as Reduced-Rank Ridge Regression (Cr5)</p> <p>This repository contains the pre-trained models released with the following <a href="http://dl.acm.org/authorize?N676969">paper</a>.</p> <blockquote> <p>"Crosslingual Document Embedding as Reduced-Rank Ridge Regression". Proceedings of the Twelfth ACM International Conference on Web Search and Data Mining. ACM, 2019.</p> </blockquote> <p>Cr5 embeds the words in a number of languages (2, 4 or 28, depending on the model), in a shared latent space. The repository contains the following models:</p> <ul> <li>English - Italian model, trained in a pairwise setting (prefixed pairwise_2_en-it)</li> <li>Danish - English model, trained in a pairwise setting (prefixed pairwise_2_da-en)</li> <li>Danish - Vietnamese model, trained in a pairwise setting (prefixed pairwise_2_da-vi)</li> <li>Danish - English - Italian - Vietnamese model, trained in a joint setting of 4 languages (prefixed joint_4)</li> <li>28 language model, trained in a joint setting of 28 languages (prefixed joint_28; the languages correspond to the following ISO 639 codes: bg, ca, cs, da, de, el, en, es, et, fi, fr, hr, hu, id, it, mk, nl, no, pl, pt, ro, ru, sk, sl, sv, tr, uk, vi.</li> </ul> <p>There is a tradeoff between the number of languages embedded in a single latent space and the performance achieved for each single language. Thus, in addition to the pre-trained models, the results from the document-level evaluation task (cf. Table 1 in <a href="https://infoscience.epfl.ch/record/263893/files/cr5%20paper.pdf">paper</a>) for the 28-language model are provided (when evaluating on the 4 languages considered in the paper, <a href="https://zenodo.org/record/2597441/files/joint_28_full_performance.pdf?download=1">joint_28_full_performance.pdf</a>). To choose the most optimal model for your use case, these results can be compared with the performance of the first four models, which are already evaluated in the paper.</p> <p>For using the pre-trained models, follow these steps:</p> <p>1. Download the model of choice for the desired languages (the dataset format is described in the readme)</p> <p>2. Download the helper library <a href="https://zenodo.org/record/2597441/files/cr5.py?download=1">cr5.py</a></p> <p>3. Look at <a href="https://zenodo.org/record/2597441/files/example.py?download=1">example.py</a> for an example on how to use the library</p> <p>If you found the provided resources useful, please cite the above paper. Here's a BibTeX entry you may use:</p> <blockquote> <p>@inproceedings{josifoski-wsdm2019-cr5,<br> title={Crosslingual Document Embedding as Reduced-Rank Ridge Regression},<br> author={Josifoski, Martin and Paskov, Ivan S. and Paskov, Hristo S. and Jaggi, Martin and West, Robert},<br> booktitle={Proceedings of the Twelfth ACM International Conference on Web Search and Data Mining},<br> organization={ACM},<br> year={2019}<br> }</p> </blockquote> <p><br> Any questions or suggestions?<br> Contact martin.josifoski@epfl.ch. </p>
FIGURE 11 in Redescription and phylogenetic placement of Cirrhilabrus sanguineus Cornic (Teleostei: Labridae), with first documentation of the female form
FIGURE 11. Preserved specimens of Cirrhilabrus blatteus. Note the unique purple staining in several of its ossified elements (interorbitals, maxilla and operculum), scales and fin rays. Photo by Y.K. Tea, photographed at the California Academy of Sciences.
FIGURE 9 in Redescription and phylogenetic placement of Cirrhilabrus sanguineus Cornic (Teleostei: Labridae), with first documentation of the female form
FIGURE 9. Bayesian phylogeny of selected Cirrhilabrus species inferred using the mitochondrial CO1 marker. Paracheilinus angulatus was used as the outgroup. Support values at nodes correspond to posterior probability and likelihood bootstrap percentages. Dagger (†) represent new, de novo sequences generated and used in this study; Filled circles represent species with strongly lanceolate caudal fins (black) and weakly lanceolate caudal fins (grey); Members of the Cirrhilabrus jordani complex from the western Pacific Ocean are coloured blue, while those from the western Indian Ocean are coloured green.
FIGURE 7 in Redescription and phylogenetic placement of Cirrhilabrus sanguineus Cornic (Teleostei: Labridae), with first documentation of the female form
FIGURE 7. Cirrhilabrus sanguineus, freshly euthanized female, ZRC 60168, 41.2 mm SL, from Cannoniers Point, off the northern coast of Mauritius. DNA sample obtained from right pectoral fin. Photo by K. Lim.
FIGURE 8 in Redescription and phylogenetic placement of Cirrhilabrus sanguineus Cornic (Teleostei: Labridae), with first documentation of the female form
FIGURE 8. Map of Mauritius in the western Indian Ocean showing distribution records of Cirrhilabrus sanguineus (closed circles).
FIGURE 4. Cirrhilabrus sanguineus, x in Redescription and phylogenetic placement of Cirrhilabrus sanguineus Cornic (Teleostei: Labridae), with first documentation of the female form
FIGURE 4. Cirrhilabrus sanguineus, x-radiograph of BPBM 24779, 66.5 mm SL, neotype (above), and BPBM 22542, 48.3 mm SL (below). Radiograph by B.W. Frable.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.