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865 results for “Mitochondrial genomes”
FIGURE 1 in The complete mitochondrial genome of Thereuopoda clunifera (Chilopoda: Scutigeridae) and phylogenetic implications within Chilopoda
FIGURE 1. Circular map of the mitochondrial genome of T. clunifera
Supplementary material 5 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Table S3. Number of codons in T. brachyrhabdion (TB) and T. gracilis (TG) for mitochondrial PCGs
Supplementary material 1 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Figure S1. Predicted tRNA structures of Tachysurus brachyrhabdion
Supplementary material 3 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Table S1. Primers used for PCR
Supplementary material 4 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Tables S2. Species, GenBank accession number and length of mitogenomes used in this study
Supplementary material 2 from: Zhang R, Deng L, Lv X, Tang Q (2022) Complete mitochondrial genomes of two catfishes (Siluriformes, Bagridae) and their phylogenetic implications. ZooKeys 1115: 103-116. https://doi.org/10.3897/zookeys.1115.85249
Figure S2. Predicted tRNA structures of Tachysurus gracilis
Supplementary material 1 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Supplementary tables :
Figure 4 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Figure 4 - Putative secondary structures of the 22 tRNA genes of Xystodesmus sp. Watson-Crick base-pairing is indicated by solid lines, and G–T pairs are indicated with plus signs.
Figure 3 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Figure 3 - Putative secondary structures of the 22 tRNA genes of Asiomorpha coarctata. Watson-Crick base-pairing is indicated by solid lines, and G–T pairs are indicated with plus signs.
Figure 2 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Figure 2 - Sequences of the non-coding region in Asiomorpha coarctata, primary structures of tandemly repeated regions (11.4 × 38 bp).
Figure 1 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Figure 1 - Mitochondrial genomes of the two millipedes sequenced in this study. A Asiomorpha coarctata B Xystodesmus sp. Circular maps were drawn with Geneious v9.1.2. Arrows indicate the orientation of gene transcription. Abbreviations of gene names are: atp6 and atp8 for ATP synthase subunits 6 and 8; cox1–3 for cytochrome oxidase subunits 1–3; cob for cytochrome b, nad1–6 and nad4L for NADH dehydrogenase subunits 1–6 and 4L; and lrRNA and srRNA for large and small rRNA subunits. tRNA genes are indicated with their one-letter corresponding amino acids. CR for control region. The GC content was plotted using a green sliding window and the AT content was blue.
Figure 6 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Figure 6 - Phylogenetic tree of the Arthropoda, including Myriapoda, Hexapoda, Crustacea and Chelicerata and outgroups reconstructed based on protein-coding genes from mtDNA genomes. Each group of four numbers indicates node confidence values (from top left): Bayesian posterior probabilities in percent (BPP) in amino acid and nucleotide datasets; maximum likelihood bootstrapping values (MLBP) in amino acid and nucleotide datasets.
Figure 5 from: Dong Y, Zhu L, Bai Y, Ou Y, Wang C (2016) Complete mitochondrial genomes of two flat-backed millipedes by next-generation sequencing (Diplopoda, Polydesmida). ZooKeys 637: 1-20. https://doi.org/10.3897/zookeys.637.9909
Figure 5 - Comparison of gene arrangements in mtDNA of the arthropod ground pattern. Gene segments are not drawn to scale. Genes shaded gray have different relative positions compared to the ground pattern. Underlining indicates the gene is encoded on the opposite strand, and arrows indicate translocation of trnT. CR: putative control region. Gene arrangements of two diplopods, Narceus annularus and Thyropygus sp. are similar and represented as one.
Figure 1 from: Yuhui X, Lijun Z, Yue H, Xiaoqi W, Chen Z, Huilun Z, Ruoran W, Da P, Hongying S (2017) Complete mitochondrial genomes from two species of Chinese freshwater crabs of the genus Sinopotamon recovered using next-generation sequencing reveal a novel gene order (Brachyura, Potamidae). ZooKeys 705: 41-60. https://doi.org/10.3897/zookeys.705.11852
Figure 1 - Mitochondrial genome sequenced in the present study. Gene order and sizes are shown relative to one another, including non-coding regions. Protein-coding genes encoded on the light strand are underlined. Transfer RNA (tRNA) genes encoded on the light strand are underlined. Each tRNA gene is designated by a single-letter amino acid code, except L1 (trnLeu (CUN)), L2 (trnLeu (UUR)), S1 (trnSer (AGN)) and S2 (trnSer (UCN)). Numbers inside circles represent the size of the non-coding region separating two adjacent genes or the amount of shared nucleotides between two overlapping genes. The translocations of gene or gene block are shaded gray.
Figure 2 from: Yuhui X, Lijun Z, Yue H, Xiaoqi W, Chen Z, Huilun Z, Ruoran W, Da P, Hongying S (2017) Complete mitochondrial genomes from two species of Chinese freshwater crabs of the genus Sinopotamon recovered using next-generation sequencing reveal a novel gene order (Brachyura, Potamidae). ZooKeys 705: 41-60. https://doi.org/10.3897/zookeys.705.11852
Figure 2 - Phylogenetic analyses derived for brachyurans using the maximum likelihood (ML) analyses and Bayesian inferences (BI) using dataset A (13 PCGs) and dataset B (13 PCGs + two rRNAs). Branch lengths and topologies came from ML analysis. Values at the branches represent BP (Bootstrap value)/BPP (Bayesian posterior probability). 100/1.00 is denoted by an asterisk. The horizontal line stands for BP under 50 or BPP under 0.9 ML analyses. The gene rearrangement is denoted by the block on (A): (I) the translocation of trnH shared by the Brachyura taxa sampled; (II) the transposition of trnQ shared by potamid species; (III) the five-gene block, (trnM-nad2-trnW-trnC-trnY), translocation shared by three Sinopotamon crabs sampled.
FIGURE 6 in A new species of the genus Xistra (Orthoptera: Tetrigoidea: Metrodorinae) with comments on the characters of mitochondrial genome
FIGURE 6. Phylogenetic tree obtained from ML and BI analysis based on 13 protein-coding genes.
FIGURE 4 in A new species of the genus Xistra (Orthoptera: Tetrigoidea: Metrodorinae) with comments on the characters of mitochondrial genome
FIGURE 4. The relative synonymous codon usage (RSCU) in the mitogenome of Xistra zhengi, sp. nov.
FIGURE 3 in A new species of the genus Xistra (Orthoptera: Tetrigoidea: Metrodorinae) with comments on the characters of mitochondrial genome
FIGURE 3. Circular map of the mitogenome of Xistra zhengi Deng, sp. nov.
Figure 1. – Sequence lengths for 7760 in The complete mitochondrial genome of Thymallus thymallus (Linnaeus, 1758) (Actinopterygii, Salmonidae) obtained by long range PCRs and double multiplexing
Figure 1. – Sequence lengths for 7760 nucleotide sequences allowing the assembling of the Thymallus thymallus mitogenome.
Figure 3 from: Shaoli M, Hao Y, Chao L, Yafu Z, Fuming S, Yuchao W (2018) The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by next-generation sequencing and phylogenetic implication (Orthoptera, Meconematinae). ZooKeys 773: 57-67. https://doi.org/10.3897/zookeys.773.24156
Figure 3 Phylogenetic reconstruction of Tettigoniidea using mitochondrial PCGs and rRNA concatenated dataset. A Bayesian result, applicable posterior probability values are shown B Maximum likelihood result with applicable bootstrap values shown.
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OpenNeuro
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