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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Single-cell and spatial transcriptomics uncovers the role of senescent vascular cells in pathological arterial remodeling during murine atherosclerosis
GEO Series GSE239602. Mus musculus. 82 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors
GEO Series GSE301265. Homo sapiens. 8 samples. Type: Other.
Spatial single cell transcriptomic analysis of a lineage-traceable mouse model of DICER1 Syndrome informs tumor developmental hierarchy [Xenium]
GEO Series GSE289001. Mus musculus. 72 samples. Type: Other.
A soil-grown wheat root atlas with validated cross-species cluster annotations allows to delineate conserved tissue specific marker genes [Spatial Transcriptomics]
GEO Series GSE271725. Triticum aestivum. 2 samples. Type: Other.
Spatial transcriptomic analysis of liver-innervating vagal sensory neurons
GEO Series GSE264570. Mus musculus. 2 samples. Type: Other.
Single-cell and In Situ Spatial Transcriptomics of Marjolin ulcers
GEO Series GSE251938. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial single cell transcriptomic analysis of a lineage-traceable mouse model of DICER1 Syndrome informs tumor developmental hierarchy [scRNA-seq]
GEO Series GSE288990. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Spatial epigenome-transcriptome co-profiling of mammalian tissues
GEO Series GSE218593. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
10X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient/deficient mice
GEO Series GSE190595. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Spatiotemporally Deciphering the Unknown Role of Persistent HPV Infection in Precancer to Cervical Cancer Progression: Integrating Single-Cell RNA-Sequencing Landscape and Spatial Transcriptomics Atla
GEO Series GSE208653. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics
GEO Series GSE254364. Homo sapiens. 2 samples. Type: Other.
Seeing the whole transcriptomics picture: Spatial gene expression analysis reveals photoreceptor stress as modulator of retinal vascular changes
GEO Series GSE248517. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
EWS-FLI1 in embryonic hMSCs induces DNA damage and Ewing sarcoma tumorigenesis [Spatial_transcriptomics]
GEO Series GSE272958. Homo sapiens. 2 samples. Type: Other.
Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics
GEO Series GSE223020. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Sequencing-free whole genome spatial transcriptomics at molecular resolution in intact tissue
GEO Series GSE302564. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockad
GEO Series GSE300288. Mus musculus. 31 samples. Type: Expression profiling by high throughput sequencing.
Integrative single-cell and spatial transcriptomic analyses identify a pathogenic cholangiocyte niche and TNFRSF12A as therapeutic target for biliary atresia
GEO Series GSE176189. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing; Other.
Topological velocity inference from spatial transcriptomic data
GEO Series GSE291200. Homo sapiens. 1 samples. Type: Other.
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [ATACseq]
GEO Series GSE141573. Drosophila melanogaster. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Visium Spatial Transcriptomics of the Human Hypothalamus
GEO Series GSE278848. Homo sapiens. 9 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.