Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
638
datasets available to search
ShareScore release 0.7.1
Dataset results
638 results for “biomes”
Carbon Monitoring System Carbon Flux from the Net Biome Exchange Prior L4 V2 (CMSFluxNBEPrior) at GES DISC
This dataset provides the Carbon Flux from the Net Biome Exchange Prior.The NASA Carbon Monitoring System (CMS) is designed to make significant contributions in characterizing, quantifying, understanding, and predicting the evolution of global carbon sources and sinks through improved monitoring of carbon stocks and fluxes. The System will use the full range of NASA satellite observations and modeling/analysis capabilities to establish the accuracy, quantitative uncertainties, and utility of products for supporting national and international policy, regulatory, and management activities. CMS will maintain a global emphasis while providing finer scale regional information, utilizing space-based and surface-based data and will rapidly initiate generation and distribution of products both for user evaluation and to inform near-term policy development and planning.
BOREAS RSS-08 BIOME-BGC Model Simulations at Tower Flux Sites in 1994
BIOME-BGC is a general ecosystem process model designed to simulate biogeochemical and hydrologic processes across multiple scales (Running and Hunt, 1993). In this investigation, BIOME-BGC was used to estimate daily water and carbon budgets for the BOREAS tower flux sites for 1994. Carbon variables estimated by the model include gross primary production (i.e., net photosynthesis), maintenance and heterotrophic respiration, net primary production, and net ecosystem carbon exchange. Hydrologic variables estimated by the model include snowcover, evaporation, transpiration, evapotranspiration, soil moisture, and outflow. The information provided by the investigation includes input initialization and model output files for various sites in tabular ASCII format.
NPP Multi-Biome: Summary Data from Intensive Studies at 125 Sites, 1936-2006
This data set, NPP Multi-Biome: Summary Data from Intensive Studies at 125 Sites, 1936-2006, contains a single shapefile that provides site-level summary statistics from 125 sites in five biomes: boreal forest, grassland, temperate forest, tropical forest, and tundra. The spatial coverage is global and spans the time period from 1936 through 2006. Study periods, and both spatial and temporal resolution vary by site. Data include georeferenced location, elevation, mean annual precipitation, mean annual minimum and maximum air temperature, dominant soil type, ecoregion type, dominant plant species, general vegetation types, annual mean or peak living above- and below-ground biomass, average annual above- and below-ground Net Primary Productivity (NPP), and reference information. Additionally study sampling period and intervals, plot management, and long-term site management history are also provided.
NPP Multi-Biome: VAST Calibration Data, 1965-1998, R1
This data set contains one data file in comma-delimited (.csv format) that provides observations from Australia for use in parameterizing the Vegetation and Soil-carbon Transfer (VAST) Model (version 1.1). The observations include net primary productivity (NPP), biomass, litter mass, surface horizon soil carbon concentration (i.e., mass fraction) and bulk density, and soil carbon and bulk density measurements at various depths. The data consist of 33 estimates of above-ground NPP based on cut grass swards and visual assessment of growth, 150 measurements of litterfall (leaf and fine twig), 76 measurements of above-ground biomass (phytomass), 91 determinations of fine litter mass, 341 measurements of soil carbon concentration in surface layers (to 15 cm depth), and 50 determinations of soil bulk density (to 15 cm depth). All these data were derived from 174 original literature references describing study sites throughout Australia. VAST is a conceptual carbon (C) cycle model that depicts large scale dynamics of terrestrial C pools and the net exchange of C between the land surface and the atmosphere at a resolution of 0.05 degrees. The model consists of 10 C pools comprising two above-ground biomass pools, two litter pools, and three pools each of below-ground biomass and soil C. Below-ground pools are distributed among three soil layers (0–20, 20–50, and 50–100 cm). Revision Notes: Only the documentation for this data set has been modified. The data files have been checked for accuracy and are identical to those originally published in 2001.
NPP Multi-Biome: Global Osnabruck Data, 1937-1981, R1
This data set contains three files. The first file provides net primary productivity (NPP) estimates, vegetation characteristics, and summary climate data for 720 globally-distributed terrestrial sites. Each site is geographically referenced (latitude/longitude) and classified according to biome (i.e., cropland, desert, forest, grassland, Mediterranean, pasture, plantation, savanna, tundra, and wetlands), where known. The data were extracted and synthesized from scientific literature dating from 1869 to 1982. The majority of references were published in the 1960s and 1970s. The second file provides a summary of climate, vegetation type, species, and type for the 720 records. The third file provides the bibliography of 858 original-source references of data on NPP from Esser et al. (1997). Literature that is not directly cross-referenced to the NPP data set records is marked with an asterisk (*). Of the 720 unique NPP records, about two-thirds have above-ground net primary production (ANPP) estimates that range between 1 and 8,530 g/m2/year dry matter, one-fourth of the sites have estimates for below-ground NPP that range between 0 and 5,828 g/m2/year, and more than half of the sites have total NPP estimates that range from 3 to 9,320 g/m2/year dry matter. The high-range estimates are lower when doubtful values, wetlands estimates, and estimates for crops/pastures and other managed systems are excluded from calculations. Revision Notes: Only the documentation for this data set has been modified. The data files have been checked for accuracy and are identical to those originally published in 1998.
ABoVE: Landsat Vegetation Greenness Trends, Boreal Forest Biome, 1985-2019
This dataset provides information on interannual trends in annual maximum vegetation greenness from 1985 to 2019 for recently undisturbed areas in the boreal forest biome. Multi-decadal changes in remotely sensed vegetation greenness provide evidence of an emerging boreal biome shift driven by climate warming. Annual maximum vegetation greenness was assessed at about 100,000 random sample locations using an ensemble of spectral vegetation indices (NDVI, EVI2, kNDVI, and NIRv) derived from Landsat products. The dataset provides raster data summarizing vegetation greenness trends for sample locations stratified by Ecological Land Unit in GeoTIFF format. These raster data span the circum-hemispheric boreal forest biome between 45 to 70 degrees north at 300 m resolution. Estimates of uncertainty were generated using Monte Carlo simulations. Interannual trends in annual maximum vegetation greenness from 1985 to 2019 and 2000 to 2019 are provided for sample locations with adequate data for time series analysis; these data are in comma-separated values (CSV) format.
NPP Multi-Biome: Global IBP Woodlands Data, 1955-1975, R1
This data set provides four data files containing net primary productivity (NPP) data, edaphic characteristics, average climatic conditions, and basic descriptive and quantitative information on vegetation for 117 globally-distributed terrestrial forest sites. The data set was derived from the IBP (International Biological Programme) Woodlands Data Set of DeAngelis et al. (1981). The data were collected from the mid 1950s to the early 1970s and were compiled into an electronic data set at the Oak Ridge National Laboratory to facilitate comparisons involving the diverse woodland ecosystems. One data file provides a complete synthesis of NPP, vegetation, edaphic, and climate data and data-source references for each of the 117 sites as published in DeAngelis et al. (1981) for a total of 5,887 records. The second file provides site location, biome, and selected forest productivity and soils data for the 117 sites. The third file provides summary climate data (temperature, precipitation, radiation, growing season length) for each site, and the fourth file provides forest type, investigator(s), and years of the study for each site. Revision Notes: Only the documentation for this data set has been modified. The data files have been checked for accuracy and are identical to those originally archived in 1997 (DeAngelis, et al, 1997.)
BOREAS RSS-08 BIOME-BGC SSA Simulations of Annual Water and Carbon Fluxes
The BOREAS RSS-08 team performed research to evaluate the effect of seasonal weather and landcover heterogeneity on boreal forest regional water and carbon fluxes using a process level ecosystem model, BIOME-BGC, coupled with remote sensing-derived parameter maps of key state variables. This data set contains derived maps of landcover type and crown and stem biomass as model inputs to determine annual evapotranspiration, gross primary production, autotrophic respiration and net primary productivity within the BOREAS SSA-MSA, at a 30 m spatial resolution. Model runs were conducted over a 3 year period from 1994-1996, images are provided for each of those years.
LiDAR-based Biomass Estimates, Boreal Forest Biome, Eurasia, 2005-2006
This data set provides estimates of aboveground biomass (AGB) for defined land cover types within World Wildlife Fund (WWF) ecoregions across the boreal biome of eastern and western Eurasia, roughly between 50 and 70 degrees N. The study focused on within-growing-season data, i.e. leaf-on conditions.The AGB estimates were derived from a series of models that first related ground-based measured biomass to airborne data collected with an Optech Airborne Laser Terrain Mapper (ALTM) 3100, and a second set of models that related the airborne estimates of biomass to Geoscience Laser Altimeter System (GLAS) LiDAR canopy structure measurements. The ground, airborne, and GLAS measurements were used to formulate the models needed to generate biomass predictions for western Eurasia. Eastern Eurasia employed a two-phase approach relating field measurements directly to the GLAS measurements without the airborne intermediary. The GLAS LiDAR biomass estimates were extrapolated by land cover types and ecoregions across the entire biome area.The study compiled remotely sensed forest structure data collected in June of 2005 and 2006 from the GLAS LiDAR instrument aboard the NASA Ice, Cloud, and land Elevation (ICESat) satellite and from an Optech Airborne Laser Terrain Mapper (ALTM) 3100 airborne instrument flown in Southeast Norway over both the ground plots and the ICESat GLAS flight path. For a consistent biome-level analysis, ecoregions contained within the boreal forest biome were identified by the World Wildlife Fund's (WWF) ecoregion map of the world (Olson et al., 2001). MODIS MOD12Q1 land cover products (2004) were used to identify land cover types for stratification purposes within eco-regions. The ground-based measurements are not provided with this data set.
NPP Multi-Biome: Grassland, Boreal Forest, and Tropical Forest Sites, 1939-1996, R1
This data set contains one data file (.csv format) that provides net primary productivity (NPP) estimates for 34 grasslands, 14 tropical forests, and 5 boreal forest sites distributed worldwide. The NPP data were compiled from published literature. In addition to above- and below-ground NPP, and total NPP estimates, the file includes site name and location, biome type, mean annual precipitation, and mean annual temperature, where available. Aboveground net primary production (ANPP), ranged from 35 to 2,320 g/m2/year, belowground net primary production (BNPP) ranged from 20 to 1,832 g/m2/year, and total net primary production (TNPP) ranged from 182 to 3,538 g/m2/year. Revision Notes: This data file has been revised to add a negative sign to south latitude and west longitude decimal degree coordinates, and the compass direction (N, S, E, W) for coordinates has been removed. NPP data for Vindhyan, India; Atherton, Australia; John Crow Ridge, Jamaica; and La Selva, Costa Rica, have been revised to correct previously reported values. Additional data references for Kuusamo, Finland, and La Selva, Costa Rica, have been added. Please see the Data Set Revisions section of this document for detailed information.
NPP Multi-Biome: Gridded Estimates for Selected Regions Worldwide, 1954-1998, R3
This data set provides two data files (.csv format) containing gridded (0.5-degree) estimates of net primary productivity (NPP), elevation, temperature, precipitation, NDVI, and biome type for selected terrestrial regions of the world. The field data used to develop NPP estimates came from 15 worldwide data sources in several different biomes covering the period 1954-1998. NPP values were developed from natural resource field inventories (e.g., forest, rangeland, crop) at different scales, from plot to county; from data compiled from published literature and high resolution maps; from simulation models using key independent variables; from regression analyses with environmental variables; and by using relationships between remotely-sensed spectral vegetation indices and field observations. The first file, NPP_Gridded_3654_cells_R3.csv with 3,654 0.5-degree grid cells, is suitable for biome level and overall analyses because of a larger sample size. In this file, 36 cells have above-ground net primary production (ANPP) only, 320 cells have total net promary production (TNPP) only, and 3,298 cells have both TNPP and ANPP. The second file, NPP_Gridded_2335_unique_cell_R3s.csv, was derived from the larger file and contains 2,335 0.5-degree grid cells after outliers were excluded, replicate measurements were averaged out for each unique geographic location, and cells classified as water, bare ground, and urban were excluded. This smaller data file is more appropriate for model/data inter-comparisons. Overall, gridded ANPP values ranged from 3 to 890 gC/m2/yr, and gridded TNPP values ranged from 3 to 1,235 gC/m2/yr. The lowest values are for sparsely vegetated ground (e.g., open shrublands) and the highest values are for forests. Revision Notes: This data set has been revised to correct the previously reported temporal coverage of field data measurements that were used to develop NPP estimates and the data set title was also corrected to reflect the date change. Missing value codes were added. Please see the Data Set Revisions section of this document for detailed information.
NPP Multi-Biome: Production and Mortality for Eastern US Forests, 1962-1996, R1
There are two data files (tab-delimited .txt format) with this data set that provide estimates of above-ground biomass per county; county-level annual above-ground biomass growth, removals (harvest), and mortality of woody biomass per hectare; county-level total annual above-ground woody biomass production per hectare; forest area per county; mortality (%) in forests within each county; and total annual production and mortality per county. The data provide annual mean above-ground wood increments for temperate forests in 1,956 counties of the 28 eastern US states. The data are derived from forest inventory data from 1960s to 1990s that were collected from an extensive network of permanent inventory plots as part of the US Department of Agriculture Forest Service Forest Inventory and Analysis (FIA). Based on the analysis of the above-ground production data (Brown and Schroeder, 1999), above-ground production of woody biomass (APWB) for hardwood forests ranged from 0.6 to 28 Mg/ha/yr and averaged 5.2 Mg/ha/yr. For softwood forests, APWB ranged from 0.2 to 31 Mg/ha/yr and averaged 4.9 Mg/ha/yr. APWB was generally highest in southeastern and southern counties, mostly along an arc from southern Virginia to Louisiana and eastern Texas. No clear spatial pattern of mortality of woody biomass (MWB) existed, except for a distinct area of high mortality in South Carolina as a result of Hurricane Hugo in 1989. For hardwood forests, MWB ranged from 0 to 15 Mg/ha/yr and averaged 1.1 Mg/ha/yr. The average MWB for softwood forests was 0.6 Mg/ha/yr with a range of 0 to 10 Mg/ha/yr. The rate of above-ground MWB averaged <1%/yr for both hardwood and softwood forests. Revision Notes: Only the documentation for this data set has been modified. The data files have been checked for accuracy and are identical to those originally published in 2003.
Arctic Vegetation Plots for IBP Tundra Biome, Barrow, Alaska, 1972-2010
This data set provides vegetation cover and environmental plot data collected as part of the International Biological Program (IBP), U. S. Tundra Biome Program, in Barrow, Alaska in 1972. Forty-three (43) plots were assessed for estimated percent land cover by species and plot data including moisture, topographic position, slope, aspect, shape, and soil data. In 1999, 2008, and 2010, 33 of the same plots were resampled for these same measures as part of the IPY "Back to the Future: Resampling old research sites to assess changes in high latitude terrestrial ecosystem structure and function" project. The tundra at Barrow is considered coastal tundra located in the most northern region of North Slope and is characterized by various microtopographic features such as polygons, as well as many ponds and lakes.
NPP Multi-Biome: NPP and Driver Data for Ecosystem Model-data Intercomparison, R2
This data set represents a refined set of global net primary productivity (NPP) estimates and model driver data that are the results of the Ecosystem Model-Data Intercomparison (EMDI) workshop review and outlier analyses undertaken to assess the accuracy of global model forecasts of terrestrial carbon cycling. EMDI builds upon the accomplishments of the original worldwide synthesis of NPP measurements and associated model driver data prepared by the Global Primary Production Data Initiative (GPPDI) (Olson et al., 2001; 2013). The EMDI review and analyses produced NPP, climate, NDVI, land cover, vegetation, and soil data for a sub-set of GPPDI data: 81 Class A sites, 933 Class B sites, and 3,855 Class C 0.5-degree cell grids. Class A sites represent well-documented study sites that have complete above- and below-ground NPP measurements. Class B sites represent more numerous extensive sites with less documentation and site-specific information available. Class C cells represent estimates of NPP for 0.5-degree grid cells for which inventory, modeling, or remote-sensing tools were used to scale up the point measurements. The data files are in comma-separated-value (.csv) format: • 18 data files for Class A sites which includes 12 comma-separated files (*.csv) and six compressed files (*.zip)• 11 data files for Class B sites in comma-separated format (*.csv).•9 data files for Class C grid cells in comma-separated format (*.csv).This document and a companion file (Olson et al., 2001) describe the compilation of NPP estimates under the GPPDI and the EMDI review and outlier analyses that produced this refined set of NPP estimates and model driver data. Revision Notes: This data set has been revised to correct previously reported NPP estimates for three OTTER Transect sites, USA, in the Class A NPP data file. Please see the Data Set Revisions section of this document for detailed information.
ABoVE: Tree Canopy Cover and Stand Age from Landsat, Boreal Forest Biome, 1984-2020
This dataset contains Landsat-derived locally-calibrated estimates of tree canopy cover (TCC) and forest stand age across global boreal forests from 1984-2020 in Cloud-Optimized GeoTIFF (*.tif) format. These raster data span the circum-hemispheric boreal forest biome between 47 to 73 degrees north at 30 m resolution. Machine learning models calibrated with data from the World Reference System 2 were used to predict TCC from Landsat data at 30-m spatial resolution at annual temporal resolution. Through analysis of TCC time series, forest change estimates of stand age from 1984-2020 were developed. The broad spatial and temporal coverage of these data provide insight into forest and carbon dynamics of the global boreal forest system. Boreal forests store a large proportion of global soil and biomass carbon and have experienced disproportionately high levels of warming over the past century.
NACP LiDAR-based Biomass Estimates, Boreal Forest Biome, North America, 2005-2006
This data set provides estimates of aboveground biomass (AGB) for defined land cover types within World Wildlife Fund (WWF) ecoregions across the boreal biome of Alaska and western and eastern Canada, roughly between 45 and 70 degrees N. The study focused on within-growing-season data, i.e. leaf-on conditions.The AGB estimates were derived from a series of models that first related ground-based measured biomass to Portable Airborne Laser System (PALS) LiDAR measurements, and a second set of models that related the airborne estimates of biomass to Geoscience Laser Altimeter System (GLAS) LiDAR canopy structure measurements. The GLAS LiDAR biomass estimates were extrapolated by land cover types and ecoregions across the entire biome area.The study compiled remotely sensed forest structure data collected in June of 2005 and 2006 from the GLAS LiDAR instrument aboard the NASA Ice, Cloud, and land Elevation (ICESat) satellite and from the PALS airborne instrument flown at various times from 2005-2009 over both the ground plots and the ICESat GLAS flight path. For a consistent biome-level analysis, ecoregions contained within the boreal forest biome were identified by the World Wildlife Fund's (WWF) ecoregion map of the world (Olson et al., 2001). Land cover maps were used to identify land cover types for stratification purposes within eco-regions. Land cover data for Canada were provided by the Earth Observations for Sustainable Development (EOSD) project centered on year 2000, with images from 1999 to 2002. The National Land Cover Data (NLCD) 2001 classification was used for Alaska based on data collected between 1999 and 2004. The ground-based measurements are not provided with this data set.
Extracellular vesicle microRNA profiling in synovial fluids and plasma from Oligoarticular Juvenile Idiopathic Arthritis patients: methodological challenges and identification of putative disease biom
GEO Series GSE191326. Homo sapiens. 24 samples. Type: Expression profiling by RT-PCR.
The relative influence of catchment and site variables on fish and macroinvertebrate richness in Cerrado biome streams. Supplemental Materials Table SM1
<p>https://doi.org/10.1007/s10980-014-0036-9</p>
Development and validation of an environmental fragility index (EFI) for the neotropical savannah biome. Supplementary Material 1.
<p>Supplementary Material 1. Correlation among 20 potential variables (n=111 sites)<br> </p>
The relative influence of catchment and site variables on fish and macroinvertebrate richness in Cerrado biome streams. Supplemental Materials Table SM1
<p>Table SM 1. Correlation among all environmental varibles</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.