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2,399 results for “fragmentation”
Target-focused library design by pocket-applied computer vision and fragment deep generative linking
<p>Data inputs and outputs used in</p> <pre>Target-focused library design by pocket-applied computer vision and fragment deep generative linking</pre> <p>Code: https://github.com/kimeguida/POEM</p> <p> </p>
Data Set "Accurate quantum-chemical fragmentation calculations for ion–water clusters with the density-based many-body expansion"
<p>This data set accompanies the publication "Accurate quantum-chemical fragmentation calculations for ion–water clusters with the density-based many-body expansion"</p> <p>It contains:</p> <p>- xyz files of all considered molecular structures.</p> <p>- PyADF input scripts for running the eb-MBE and db-MBE calculations.</p> <p>- raw results data from the eb-MBE and db-MBE calculations</p> <p>- Jupyter notebooks for generating the plots and tables</p>
Raw Sanger sequences of the tyr fragment from crispant and control zebrafish embryos
<p><span>Thanks to the amenability to genetic modifications, the minimal or non-invasive phenotyping possibilities in early embryos and larvae and the presence of a high percentage of genes orthologous to humans, zebrafish is a successful alternative vertebrate to validate new disease genes and variants and to study mechanisms underlying human diseases. We developed an optimized method allowing early and gentle genotype detection to reduce further possible suffering associated with the generation of genetically modified zebrafish and valid to strategize the employment of "surplus" animals (e.g., those needed solely for line generation or without the desired genotype). The method is based on minimally-invasive tissue (fin) scratching (FS) to obtain genomic DNA material and perform genotyping in early zebrafish embryos. We showcase the method's usefulness for various genotyping needs, including screening both F0 and stable CRISPR/Cas9 lines and obtaining genomic material compatible with Sanger sequencing. Here we provide the raw sequences obtained from FS-derived genomic DNA of single mutant F0 embryos carrying mutations in the <em>tyr</em> gene generated with Base editor (BE) CRISPR/Cas9 technology. We compared the sequencing outcome of FS- vs whole embryos (WE)-based genomic DNA preparation (the WE sequencing results are also provided here). Sequences show the successful C>T (G>A) conversion generating crispant <em>tyr</em> mutants that FS-derived genomic DNA can capture. The resulting dataset demonstrates the compatibility of the method developed with sequencing-based genotyping of early crispant embryos. </span></p>
Figure 6 in High richness of non-volant mammals in a seasonal forest fragment in southeastern Brazil
Figure 6. Cluster analysis of medium and large mammal communities' similarity between 19 Atlantic Forest remnants in São Paulo, southeastern Brazil (including a single remnant in Paraná, Brazil). AGPE = Água do Peão; AGUA = Aguapeí State Park; AMBO = Amadeu Botelho Private Nature Reserve; CBSP = Carlos Botelho State Park; COSM = Matão de Cosmópolis; ESAL = Estrela da Alcídia Água Sumida; ISP = Intervales State Park; LUNO = Lua Nova; MATU = Maturi; MDSP = Morro do Diabo State Park; MGFR = Morro Grande Forest Reserve; PBES = Ponte Branca (Black Lion Tamarin Ecological Station); SBNP = Serra da Bocaina National Park; SEIR = Seis R; SMES = Santa Maria Água Sumida (Black Lion Tamarin Ecological Station); SMA = Santa Maria Forest; STMO = Santa Mônica; TUES = Tucano (Black Lion Tamarin Ecological Station).
Figure 5 in High richness of non-volant mammals in a seasonal forest fragment in southeastern Brazil
Figure 5. Carnivora, Artiodactlya, and Perissodactyla recorded in Santa Maria fragment. (A) Puma concolor; (B) Leopardus pardalis; (C) Panthera onca; (D) Cerdocyon thous; (E) Chrysocyon brachyurus; (F) Mazama rufa; (G) Dicotyles tajacu; (H) Tapirus terrestris.
Figure 7 in High richness of non-volant mammals in a seasonal forest fragment in southeastern Brazil
Figure 7. Scatterplot of non-volant mammal species richness according to fragment area in 14 Atlantic Forest fragments of Pontal do Paranapanema, São Paulo, Southeastern Brazil. The study site, Santa Maria is represented by a blue triangle. AGPE = Água do Peão; ARIZ = Fazenda Arizona; ASES = Água Sumida (Black Lion Tamarin Ecological Station); ESAL = Estrela da Alcídia; LUNO = Lua Nova; MATU = Maturi; MDSP = Morro do Diabo State Park; NOPO = Nova Pontal; PBES = Ponte Branca (Black Lion Tamarin Ecological Station); SASE = São Sebastião; SEIR = Seis R; STMO = Santa Mônica; TUES = Tucano (Black Lion Tamarin Ecological Station).
Figure 1 in High richness of non-volant mammals in a seasonal forest fragment in southeastern Brazil
Figure 1. Santa Maria forest fragment and its location in Pontal do Paranapanema, São Paulo, southeastern Brazil. Note the small creek (Ribeirão Água Sumida) that passes on its southern edges and the SPV-035 road along its northeastern edge. Green are native forest remnants and blue are the rivers and creeks.
Figure 4 in High richness of non-volant mammals in a seasonal forest fragment in southeastern Brazil
Figure 4. Didelphidae, Xenarthra, Primates and Rodentia recorded in Santa Maria fragment. (A) Marmosa paraguayana; (B) Didelphis albiventris; (C) Gracilinanus microtarsus; (D) Euphractus sexcinctus; (E) Dasypus novemcinctus (preyed); (F) Tamandua tetradactyla; (G) Sapajus nigritus; (H) Leontopithecus chrysopygus; (I) Dasyprocta azarae; J) Oecomys cleberi.
Figure 3 in High richness of non-volant mammals in a seasonal forest fragment in southeastern Brazil
Figure 3. Locations of the 18 medium and large mammal inventories (green dots) that were compared to the mammal community of Santa Maria forest fragment (red square). Atlantic Forest remnants (sensu Ribeiro et al., 2009), are in light gray. AGPE = Água do Peão (Ditt et al., 1999); AGUA = Aguapeí State Park (Faria & Pires, 2010); AMBO = Amadeu Botelho Private Nature Reserve (Reale et al., 2014); CBSP = Carlos Botelho State Park (Brocardo et al., 2012); COSM = Matão de Cosmópolis (Magioli et al., 2014); ESAL = Estrela da Alcídia Água Sumida (Ditt et al., 1999); ISP = Intervales State Park (de Vivo & Gregorin, 2001); LUNO = Lua Nova (Ditt et al., 1999); MATU = Maturi (Ditt et al., 1999); MDSP = Morro do Diabo State Park (Faria & Pires, 2006); MGFR = Morro Grande Forest Reserve (Negrão & Valladares-Pádua, 2006); PBES = Ponte Branca (Black Lion Tamarin Ecological Station) (Valladares-Pádua, 2007); SBNP = Serra da Bocaina National Park (Delciellos et al., 2012); SEIR = Seis R (Ditt et al., 1999); SMES = Santa Maria Água Sumida (Black Lion Tamarin Ecological Station) (Valladares-Pádua, 2007); SMA = Santa Maria Forest (this study); STMO = Santa Mônica (Ditt et al., 1999); TUES = Tucano (Black Lion Tamarin Ecological Station) (Valladares-Pádua, 2007).
Depleted cultural richness of an avian vocal mimic in fragmented habitat
<p>Aim: Conservation has recently shifted to include behavioural or cultural diversity, adding substantial value to conservation efforts. Habitat loss and fragmentation can deplete diversity in learnt behaviours such as bird song by reducing the availability of song tutors, yet these impacts are poorly understood. Vocal mimicry may be particularly sensitive to habitat loss and fragmentation through the resulting reduction in both heterospecific models and conspecific tutors. Here we examine the relationship between habitat availability and mimetic repertoire size and composition in male Albert's lyrebirds (<em>Menura alberti</em>), a near-threatened species renowned for its remarkable mimetic abilities.</p> <p>Location: Eastern Australia</p> <p>Methods: We calculated repertoire size and composition from recordings of male Albert's lyrebirds from throughout the species' range. We estimated patch size and local habitat availability using a species distribution model and remotely sensed vegetation types. We assessed the local model species assemblage through species distribution models and automated acoustic detectors.</p> <p>Results: Individual males in smaller habitat patches, or in areas with a lower proportion of suitable habitat, mimicked fewer model species and fewer vocalisation types, though they mimicked comparatively more vocalisations from each model species than individuals in larger patches or with more intact habitat. All model species were likely to occur in most study sites, suggesting that repertoires are not driven by the availability of model species.</p> <p>Main conclusions: Our results suggest that mimetic repertoire sizes are influenced by habitat availability through the number of lyrebird tutors. Further, individuals in disturbed habitat may partially compensate for mimicking fewer species by mimicking more vocalisations from each species. This study supports the hypothesis that cultural diversity may be impoverished by habitat loss and fragmentation in a similar way to genetic diversity. Variation in song diversity may therefore signal population health and highlight populations in particular need of conservation action.</p>
Microsatellite fragment sizing of South African Cape vulture (Gyps coprotheres)
<p>Microsatellite genoytping fragment sizing of <em>Gyps coprotheres</em> individuals collected in South Africa.</p>
D-Day Fragment Bomb
After a visit to Normandy, France. I was inspired to make something they found in the region. Created with Substance Painter. Source: Objaverse 1.0 / Sketchfab
Marksville Pottery Fragment
Base fragment from a Marksville-period pot. Edge of impressed zone bordered by deep incision. Found in Tensas Parish. 100BC-400CE PS_06 Source: Objaverse 1.0 / Sketchfab
Romanesque Fragment - 09 - Kilmeen
A series of romanesque fragments have been discovered in Kilmeen graveyard. The site has the base of round tower, and late medieval church. The fragments demonstrate that a decorated romanesque building was also located at the site. Source: Objaverse 1.0 / Sketchfab
Celt End Fragment
Possibly the back end of a celt. Compare to a similar [item](https://sketchfab.com/3d-models/broken-celt-haft-end-070fcfe2274b4b36baf3206084f7c715). AF_17 Source: Objaverse 1.0 / Sketchfab
1959.334 Stela Fragment, 600-950
Cleveland Museum of Art "limestone, Each: 31.8 x 30.8 x 12.2 cm (12 1/2 x 12 1/8 x 4 3/4 in). Gift of Mr. and Mrs. James C. Gruener 1959.334 This unusual sculpture is stylistically related to the art of both Oaxaca and the Gulf Coast. The skeletal being on one side resembles a low-relief stucco death figure on the wall of Tomb 1 in Zaachila, while the theme of the figure seemingly trapped in carved scrolls is repeated on a Stela at El Tajin. The Post-classic period in Mesoamerica is marked by many such instances of long-distance stylistic influence." ~ http://www.clevelandart.org/art/1959.334 Photogrammetry by Thomas Flynn Source: Objaverse 1.0 / Sketchfab
Kilcoolaght East V ogham fragment
Captured using photogrammetry (processed with Agisoft Photoscan). One of a number of ogham stones and fragments from Kilcoolaght East, Co. Kerry. Source: Objaverse 1.0 / Sketchfab
Fragment - Romanesque Killaloe
A fragment from a possible doorway or window from an earlier phase of buildin gat St. Flannan's Killaloe Source: Objaverse 1.0 / Sketchfab
Inscription Fragment
ID: MKGHamburg 2011.214.1-2 <br> Title: Fragment of an inscription <br> Object type: unknown <br> Origin: Yemen <br> Date/Period: 2 cent BC - 2 cent AD <br> Material: stone <br> Measurements: 29 cm (heights); c.54 cm (width); c. 9 cm (depth) <br> Language: Sabaean <br> Museum/Collection: Museum für Kunst und Gewerbe Hamburg Inv. 2011.214.1-2; former collection Carl August Rathjens (Hamburg) <br> The research for this 3D object was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany´s Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg. Source: Objaverse 1.0 / Sketchfab
Astian katkelma, pottery fragment KM14100:4b
Saviastian katkelma, uurrekoristelua. Katkelmaan on merkitty myös aiempi löytö- tai kokoelmanumero. Hassunan kulttuuri, noin 6000-5000 eaa. Pottery sherd, carved decorations. In addition to the collection number of the Finnish Heritage Agency, the fragment has also an earlier marking written on it's side. Hassuna period. Ca. 6000-5000 BCE. 3D-digitoitu osana Making Home Abroad / Kotona kulttuurissa -tutkimushanketta 2020-2021, käyttäen digitaalista fotogrammetriaa. 3D-digitointia on yksinkertaistettu huomattavasti katselukokemuksen sujuvoittamiseksi. 3D digitized as part of the Making Home Abroad / Kotona kulttuurissa research project 2020-2021, using digital photogrammetry. The 3D digitization is strongly simplified to ensure a smooth online visualization. Source: Objaverse 1.0 / Sketchfab
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.