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Figure 5 from: Hershberger WL (2021) Substrate-borne vibrations used during acoustic communication and the existence of courtship songs in some species of the genus Anaxipha (Saussure) (Orthoptera: Trigonidiidae: Trigonidiinae). Journal of Orthoptera Research 30(2): 185-191. https://doi.org/10.3897/jor.30.70990
Figure 5 Audio spectrograms of three seconds of calling and courtship songs of the four species of Anaxipha. A1.A. exigua calling song; A2.A. exigua courtship song; B1.A. tinnulacita calling song; B2.A. tinnulacita courtship song; C1.A. tinnulenta calling song; C2.A. tinnulenta courtship song; D1.A. thomasi calling song; D2.A. thomasi courtship song. Compared to calling song, the individual syllables of courtship songs are shorter, patterned differently, with more sounds associated with wing-opening movements (wing-dragging).
Figure 4 from: Hershberger WL (2021) Substrate-borne vibrations used during acoustic communication and the existence of courtship songs in some species of the genus Anaxipha (Saussure) (Orthoptera: Trigonidiidae: Trigonidiinae). Journal of Orthoptera Research 30(2): 185-191. https://doi.org/10.3897/jor.30.70990
Figure 4 Oscillograms of the calling and courtship songs of the four species of Anaxipha. A1.A. exigua calling song; A2.A. exigua courtship song; B1.A. tinnulacita calling song; B2.A. tinnulacita courtship song; C1.A. tinnulenta calling song; C2.A. tinnulenta courtship song; D1.A. thomasi calling song; D2.A. thomasi courtship song. All audio files were normalized to -3 dBFS for comparison. Y-axis represents amplitude and is analogous to dBFS (full scale).
Figure 7 from: Hershberger WL (2021) Substrate-borne vibrations used during acoustic communication and the existence of courtship songs in some species of the genus Anaxipha (Saussure) (Orthoptera: Trigonidiidae: Trigonidiinae). Journal of Orthoptera Research 30(2): 185-191. https://doi.org/10.3897/jor.30.70990
Figure 7 Examination of the means of the average power of the combined first two and the combined last two taps of drumming bouts in courtship songs ±SD. In nearly all instances, tapping becomes louder during an individual drumming bout within courtship songs across all four species. Numbers closer to the abscissas are louder. a = average of the first two taps, b = average of the last two taps in bouts of four taps or more. * = t-tests comparing the means of first two taps to the last two taps, within each species, showed the p-values were all < 0.0001, showing that the taps are significantly louder at the end of drumming bouts (A. exigua n = 5 songs, 45 drumming bouts; A. tinnulacita n = 4, 29; A. tinnulenta n = 4, 98; A. thomasi n = 5, 75).
Figure 1 from: Hershberger WL (2021) Substrate-borne vibrations used during acoustic communication and the existence of courtship songs in some species of the genus Anaxipha (Saussure) (Orthoptera: Trigonidiidae: Trigonidiinae). Journal of Orthoptera Research 30(2): 185-191. https://doi.org/10.3897/jor.30.70990
Figure 1 A typical drumming bout showing the low-frequency and brief nature of these sounds. The figure is the selection of a drumming bout from a courtship song of A. thomasi showing the selection window spanning from the middle of the first tap to the middle of the last tap. This tapping bout consists of 12 taps.
Plant-derived catechols are substrates of TonB-dependent transporters and sensitize Pseudomonas aeruginosa to siderophore-drug conjugates
<p>The dataset contains raw data used to generate the figures of the associated mansucript</p>
Data from: Extracellular matrix-associated gene expression in adult sensory neurons cultured on laminin substrates
Background: In our previous investigations of the role of the extracellular matrix (ECM) in promoting neurite growth we have observed that a permissive laminin (LN) substrate stimulates differential growth responses in subpopulations of mature dorsal root ganglion (DRG) neurons. DRG neurons expressing Trk and p75 receptors grow neurites on a LN substrate in the absence of neurotrophins, while isolectin B4-binding neurons (IB4+) do not display significant growth under the same conditions. We set out to determine whether there was an expression signature of the LN-induced neurite growth phenotype. Using a lectin binding protocol IB4+ neurons were isolated from dissociated DRG neurons, creating two groups - IB4+ and IB4-. A small-scale microarray approach was employed to screen the expression of a panel of ECM-associated genes following dissociation (t=0) and after 24 hr culture on LN (t=24LN). This was followed by qRT-PCR and immunocytochemistry of selected genes. Results: The microarray screen showed that 36 of the 144 genes on the arrays were consistently expressed by the neurons. The array analyses showed that six genes had lower expression in the IB4+ neurons compared to the IB4- cells at t=0 (CTSH, Icam1, Itgβ1, Lamb1, Plat, Spp1), and one gene was expressed at higher levels in the IB4+ cells (Plaur). qRT-PCR was carried out as an independent assessment of the array results. There were discrepancies between the two methods, with qRT-PCR confirming the differences in Lamb1, Plat and Plaur, and showing decreased expression of AdamTs1, FN, and Icam in the IB4+ cells at t=0. After 24 hr culture on LN, there were no significant differences detected by qRT-PCR between the IB4+ and IB4- cells. However, both groups showed upregulation of Itgβ1 and Plaur after 24 hr on LN, the IB4+ group also had increased Plat, and the IB4- cells showed decreased Lamb1, Icam1 and AdamTs1. Further, the array screen also detected a number of genes (not subjected to qRT-PCR) expressed similarly by both populations in relatively high levels but not detectably influenced by time in culture (Bsg, Cst3, Ctsb, Ctsd, Ctsl, Mmp14, Mmp19, Sparc. We carried out immunohistochemistry to confirm expression of proteins encoded by a number of these genes. Conclusions:Our results show that 1B4+ and IB4- neurons differ in the expression of several genes that are associated with responsiveness to the ECM prior to culturing (AdamTs1, FN, Icam1, Lamb1, Plat, Plaur). The data suggest that the genes expressed at higher levels in the IB4- neurons could contribute to the initial growth response of these cells in a permissive environment and could also represent a common injury response that subsequently promotes axon regeneration. The differential expression of several extracellular matrix molecules (FN, Lamb1, Icam) may suggest that the IB4- neurons are capable of maintaining /secreting their local extracellular environment which could aid in the regenerative process. Overall, these data provide new information on potential targets that could be manipulated to enhance axonal regeneration in the mature nervous system.
Methane production for fed-batch assays amended with graphene oxide and two standard substrates
<p>The spreadsheet contains all the data generated using the Automatic Methane Potential Tests System (AMPTS) for fed-batch experiments containing graphene oxide (GO) at 0, 5, 10, and 20 mg of GO per g of volatile solids (VS).</p> <p>Also, the dataset is divided accordingly to the two substrates used, i.e., glucose (G) and microcrystalline cellulose (C).</p>
Figure 1 from: Nelson DM, Starr CK (2016) Comparative nesting success of the keyhole mud-dauber (Hymenoptera: Crabronidae: Trypoxylon nitidum) in different substrates. Journal of Hymenoptera Research 52: 163-167. https://doi.org/10.3897/jhr.52.9997
Figure 1 - Stages in the reutilization of old Trypoxylon albitarse cells by Trypoxylon nitidum. a Without reutilization (note Trypoxylon albitarse emergence hole) b Reutilized with no emergence by Trypoxylon nitidum (note closure without emergence hole) c Reutilized with emergence by Trypoxylon nitidum (note smaller emergence hole). Scale bar = 1 cm. Figure by Terry Sampson.
LC-MS analysis raw data of DTX3L-mediated enzymatic conjugation of ubiquitin with various nucleotide substrates
Open the record for dataset details and reuse information.
Figs. 3a-f. a in Efficiency of indolebutyric Acid And different substrAtes in yerbA MAte cuttings
Figs. 3a-f. a. Bud number; b. leaf number; c. bud fresh weight; d. root fresh weight; e. bud dry weight; f. root dry weight of Ilex paraguariensis cuttings obtained in each treatment (T1: S1 without IBA; T2: S1 + 3.0 mg L-1 IBA; T3: S2 without IBA; T4: S2 + 3.0 mg L-1 IBA). S1: substrate composed of biostabilized pine bark, limestone and vermiculite; S2: S1 + carbonized rice hulls (1:1). Values are the average of survivor explants (at least thirteen) ± standard error. Mean values with different letters are different by the Tukey test (p ≤ 0.05).
Fig. 2 in Efficiency of indolebutyric Acid And different substrAtes in yerbA MAte cuttings
Fig. 2. Periodical analysis (up to 180 days) of survival rate (%) of Ilex paraguariensis cuttings, considering only the treatments with survivor explants (T1: S1 without IBA; T2: S1 + 3.0 mg L-1 IBA; T3: S2 without IBA; T4: S2 + 3.0 mg L-1 IBA). S1: substrate composed of biostabilized pine bark, limestone and vermiculite; S2: S1 + carbonized rice hulls (1:1). All the treatments initiated with sixty cuttings. Mean values with different letters are different by the Tukey test (p ≤ 0.05).
Data for manuscript "Scanning Acoustic Microscopy Characterization of Cold-Sprayed Coatings Deposited on Grooved Substrates"
<p>Data sets used for generating figures from SAM measurements.</p>
Supplementary data: Cardiac and Skeletal Actin Substrates Uniquely Tune Cardiac Myosin Strain-Dependent Mechanics
<p>Supplementary data for the paper 'Cardiac and Skeletal Actin Substrates Uniquely Tune Cardiac Myosin Strain-Dependent Mechanics'.</p>
Figure 4 from: Rohner PT, Haenni J-P, Giesen A, Busso JP, Schäfer MA, Püchel-Wieling F-W, Blanckenhorn WU (2019) Temporal niche partitioning of Swiss black scavenger flies in relation to season and substrate age (Diptera, Sepsidae). Alpine Entomology 3: 1-10. https://doi.org/10.3897/alpento.3.28366
Figure 4 Number of individuals of seven common sepsid species as a function of dung age (in hours (h)). While S.cynipsea, flavimana and orthocnemis are disproportionally often observed on fresh dung, S.duplicata and Saltellasphondylii gain in relative abundance over time. (Note the different scaling of the y-axes; data from Püchel 1993; S.duplicata data only qualitative.)
Figure 3 from: Rohner PT, Haenni J-P, Giesen A, Busso JP, Schäfer MA, Püchel-Wieling F-W, Blanckenhorn WU (2019) Temporal niche partitioning of Swiss black scavenger flies in relation to season and substrate age (Diptera, Sepsidae). Alpine Entomology 3: 1-10. https://doi.org/10.3897/alpento.3.28366
Figure 3 Non-metric multidimensional scaling (NMDS) visualizing seasonal variation in species composition as well as differences between cattle pastures (triangles) and dung piles (circles). The smaller the distance between two samples, the greater their similarity.
Figure 2 from: Rohner PT, Haenni J-P, Giesen A, Busso JP, Schäfer MA, Püchel-Wieling F-W, Blanckenhorn WU (2019) Temporal niche partitioning of Swiss black scavenger flies in relation to season and substrate age (Diptera, Sepsidae). Alpine Entomology 3: 1-10. https://doi.org/10.3897/alpento.3.28366
Figure 2 Seasonal patterns of species diversity, expressed by the first three Hill indices, for sepsid communities captured by sweep netting on cow pastures, dung piles or Malaise capturing in a peat bog. 0D equals species richness, 1D represents the exponential Shannon entropy (evenness) that can be interpreted as the number of typical species, while 2D resembles the reciprocal form of the Gini-Simpson Index that relates to the number of highly abundant species. We only plotted samples with 20 or more individuals (all years combined). The size of the points is proportional to the number of individuals present in the sample.
Figure 1 from: Rohner PT, Haenni J-P, Giesen A, Busso JP, Schäfer MA, Püchel-Wieling F-W, Blanckenhorn WU (2019) Temporal niche partitioning of Swiss black scavenger flies in relation to season and substrate age (Diptera, Sepsidae). Alpine Entomology 3: 1-10. https://doi.org/10.3897/alpento.3.28366
Figure 1 Relative abundance of males of different sepsid species across the season on pastures (all years pooled). Patterns are indicated separately for high (blue) and low (green) altitude sites. Species trapped in a Malaise trap are shown in black. Point size is proportional to the total number of males contained in the respective sample.
Text-fig. 6. Original material of Peziza sulphurea (syntype L 910,256-897), the substrate with location of apothecia of two species. 1. apothecia which do produce a purple reaction to KOH; 2. apothecia which do not produce a purple reaction to KOH. in A Revision Of Trichopeziza Lizonii, T. Sulphurea And T. Violascens (Ascomycota, Helotiales) From The Herbarium Prm With Notes On Type Material Of Peziza Sulphurea
Text-fig. 6. Original material of Peziza sulphurea (syntype L 910,256-897), the substrate with location of apothecia of two species. 1. apothecia which do produce a purple reaction to KOH; 2. apothecia which do not produce a purple reaction to KOH.
Figure 14 in Сarbon fluxes intensity from substrates and phototrophic consortiums of the photic zones in Montenegro caves
Figure 14. The results of isotopic analysis of bryophytes phytomass of the photic zones in Montenegro caves.
Prescribed fire regimes influence responses of fungal and bacterial communities on new litter substrates in a brackish tidal marsh
<p>Datasets including R code and .csv files of ESV data for fungal and bacterial communities in samples.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.