Find research datasets worth reusing

Data from: Microtopographic specialization and flexibility in tropical peat swamp forest tree species

Tropical tree species distributions are determined by a wide range of biotic and abiotic factors, including topography and hydrology. Tropical peat swamp forests (TPSFs) are characterized in part by small-scale variations in topography ('hummocks' and 'hollows') that create distinct microhabitats and thus may contribute to niche diversification among TPSF tree species. Using tree elevations calibrated to daily peat water levels collected using a data logger and a permutation test, we evaluated topographical microhabitat preferences for 21 tree species in a relatively undisturbed TPSF in Central Kalimantan, Indonesia, to determine whether these species show preferential association with hummocks or hollows and to quantify the prevalence of microhabitat specialization among them. Only one species, Tetractomia tetrandrum, emerged as a hollow specialist, with no hummock specialists among the species tested. The remaining 20 species, including Psydrax dicoccos, which had the lowest mean observed elevation, and Maasia hypoleuca, which had the highest mean observed elevation, showed no clear microtopographic preference. This suggests that many TPSF species may be resilient to the natural hydrologic variations that occur in relatively intact peat swamp forests. Such studies of microtopographic preferences of tree species in TPSF and other wetland forest ecosystems can inform selection of tree species for reforestation projects, and potentially also provide information on how future climate change may impact these habitats and their resident tree species.

opencc-zeroDec 2015View details →

Data from: What shapes cerambycid beetle communities in a tropical forest mosaic? Assessing the effects of host tree identity, forest structure, and vertical stratification

Due to anthropogenic activities, tropical rain forests face many challenges in sustaining biodiversity and maintaining global climates. This study explores how forest successional stage, tree composition, and stratum affect communities of saproxylic cerambycid beetles—concealed feeders that play important roles in forest nutrient cycling. Forty trees in five families (Fabaceae, Lecythidaceae, Malvaceae, Moraceae, and Sapotaceae) were sampled in a mosaic of old-growth and secondary forest on the Osa Peninsula, Costa Rica. Bait branches yielded 3549 cerambycid individuals in 49 species. Species richness was almost identical in old-growth and secondary forest, and both yielded specialists, but abundance was higher in old-growth forest. Overall community structure was most strongly influenced by host plant species; within most plant families it was also impacted by forest successional status. Moraceae was the exception, presumably because the focal tree species was abundant in both old-growth and secondary forest. Several host and old-growth specialist species reached high densities within patches of old-growth forest, but seldom colonized apparently suitable trees within secondary forest. This suggests that even small areas of old-growth forest can act as refuges, but that secondary forest may act as a barrier to dispersal. The vulnerability of specialized saproxylic insects to land use change will be linked to the ability of their preferred hosts to disperse to and persist in successional habitats; rearing studies may provide the most accurate method to monitor community changes over time.

opencc-zeroDec 2018View details →

Data from: Experiments with artificial nests provide evidence for ant community stratification and nest site limitation in a tropical forest

Ants are dominant in tropical forests and many species nest in hollow cavities. The manner in which species are vertically stratified in these complex habitats is not known, with lack of nest sites being proposed to limit ant populations. Here we assess ant community stratification and nest site limitation in a lowland rainforest in New Guinea using experimental addition of artificial bamboo nests of two cavity sizes (small: ~12 mm. large: ~32 mm diameter) placed at ground level, in the understorey, and in the canopy. We also conducted a pilot experiment to test the utility of nest translocation. Nests were checked for occupancy after 10 weeks and half of the occupied nests were then translocated between forest plots, while keeping same vertical position. Occupancy of small nests was much higher in the understorey and canopy than at ground level (~75% versus ~25%). Translocation was successful, as a majority of nests was inhabited by the same species before and after translocation and there was no impact of translocation to a different plot compared to the control, except for a reduction in colony size at ground level. Our experiment demonstrates a vertical stratification in community composition of ants nesting in hollow dead cavities and shows that these ants are more nest-site limited in the higher strata than at ground level. Use of small artificial cavities has great potential for future experimental studies, especially for those focused on arboreal ants, as occupancy is high and translocation does not negatively affect their colony size.

opencc-zeroDec 2018View details →

Data from: A view from above: A view from above: unmanned aerial vehicles (UAVs) provide a new tool for assessing liana infestation in tropical forest canopies

1. Tropical forests store and sequester large quantities of carbon, mitigating climate change. Lianas (woody vines) are important tropical forest components, most conspicuous in the canopy. Lianas reduce forest carbon uptake and their recent increase may, therefore, limit forest carbon storage with global consequences for climate change. Liana infestation of tree crowns is traditionally assessed from the ground, which is labour-intensive and difficult, particularly for upper canopy layers. 2. We used a light-weight unmanned aerial vehicle (UAV) to assess liana infestation of tree canopies from above. We used a commercially available quadcopter UAV with an integrated, standard three-waveband camera to collect aerial image data for 150ha of tropical forest canopy. By visually interpreting the images, we assessed the degree of liana infestation for 14.15ha of forest for which ground-based estimates were collected simultaneously. We compared the UAV liana infestation estimates with those from the ground to determine the validity, strengths and weaknesses of using UAVs as a new method for assessing liana infestation of tree canopies. 3. Estimates of liana infestation from UAV correlated strongly with ground-based surveys at individual tree and plot level, and across multiple forest types and spatial resolutions, improving liana infestation assessment for upper canopy layers. Importantly, UAV-based surveys, including the image collection, processing and visual interpretation, were considerably faster and more cost-efficient than ground-based surveys. 4. Synthesis and applications: UAV image data of tree canopies can be easily captured and used to assess liana infestation at least as accurately as traditional ground data. This novel method promotes reproducibility of results and quality control, and enables additional variables to be derived from the image data. It is more cost-effective, time-efficient and covers larger geographical extents than traditional ground surveys, enabling more comprehensive monitoring of changes in liana infestation over space and time. This is important for assessing liana impacts on the global carbon balance, and particularly useful for forest management where knowledge of the location and change in liana infestation can be used for tailored, targeted and effective management of tropical forests for enhanced carbon sequestration (e.g. REDD+ projects), timber concessions and forest restoration.14-Nov-2018

Data from: Photosynthetic acclimation to warming in tropical forest tree seedlings

Tropical forests have a mitigating effect on man-made climate change by acting as a carbon sink. For that effect to continue, tropical trees will have to acclimate to rising temperatures, but it is currently unknown whether they have this capacity. We grew seedlings of three tropical tree species over a range of temperature regimes (TGrowth = 25, 30, 35 °C) and measured the temperature response of photosynthetic CO2 uptake. All species showed signs of acclimation: the temperature-response curves shifted, such that the temperature at which photosynthesis peaked (TOpt) increased with increasing TGrowth. However, although TOpt shifted, it did not reach TGrowth at high temperature, and this difference between TOpt and TGrowth increased with increasing TGrowth, indicating that plants were operating at supra-optimal temperatures for photosynthesis when grown at high temperatures. The high-temperature CO2 compensation point did not increase with TGrowth. Hence, temperature-response curves narrowed with increasing TGrowth. TOpt correlated with the ratio of the RuBP regeneration capacity over the RuBP carboxylation capacity, suggesting that at high TGrowth photosynthetic electron transport rate associated with RuBP regeneration had greater control over net photosynthesis. The results show that although photosynthesis of tropical trees can acclimate to moderate warming, carbon gain decreases with more severe warming.

Data from: Environmental constraints on the compositional and phylogenetic beta-diversity of tropical forest snake assemblages

The ongoing biodiversity crisis increases the importance and urgency of studies addressing the role of environmental variation on the composition and evolutionary history of species assemblages, but especially the tropics and ectotherms remain understudied. In regions with rainy summers, coexistence of ectothermic species may be determined by the partitioning of the climatic niche, since ectotherms can rely on water availability and thermoregulatory behaviour to buffer constraints along their climatic niche. Conversely, ectotherms facing dry summers would have fewer opportunities to climatic niche partitioning and other processes rather than environmental filtering would mediate species coexistence. We used 218 snake assemblages to quantify the compositional (CBD) and phylogenetic (PBD) beta-diversity of snakes in the Atlantic Forest (AF) hotspot. We identify two AF regions with distinct climatological regimes: dry summers in the northern-AF and rainy summers in the southern-AF. While accounting for the influence of multiscale spatial processes, we disentangle the relative contribution of thermal, water-related, and topographic conditions in structuring the CBD and PBD of snake assemblages, and determine the extent in which snake assemblages under distinct climatological regimes are affected by environmental filtering. Thermal conditions best explain CBD and PBD of snakes for the whole AF, whereas water-related factors best explain the structure of snake assemblages within a same climatological regime. CBD and PBD patterns are similarly explained by spatial factors but snake assemblages facing dry summers are more affected by spatial processes operating at fine to intermediate spatial scale whereas those assemblages in regions with rainy summers have a stronger signature of coarser-scale processes. As expected, environmental filtering plays a stronger role in southern-AF than northern-AF, and the synergism between thermal and water-related conditions is the key cause behind this difference. Differences in climatological regimes within the tropics may affect processes mediating species coexistence. The role of broad-scale gradients (e.g. temperature, precipitation) in structuring tropical ectothermic assemblages is greater in regions with rainy summers where climatic niche partitioning is more likely. Our findings highlight the potential stronger role of biotic interactions and neutral processes in structuring ectothermic assemblages facing changes towards warmer and dryer climates.

opencc-zeroDec 2018View details →

Data from: Long-term recovery of the functional community assembly and carbon pools in an African tropical forest succession

On the African continent, the population is expected to expand fourfold in the next century, which will increasingly impact the global carbon cycle and biodiversity conservation. Therefore, it is of vital importance to understand how carbon stocks and community assembly recover after slash-and-burn events in tropical second-growth forests. We inventoried a chronosequence of 15 1-hectare plots in lowland tropical forest of the central Congo Basin and evaluated changes in aboveground and soil organic carbon stocks and in tree species diversity, functional composition and community-weighted functional traits with succession. We aimed to track long-term recovery trajectories of species and carbon stocks in secondary forests, comparing 5 to 200+ year old secondary forest with reference primary forest. Along the successional gradient, the functional composition followed a trajectory from resource acquisition to resource conservation, except for nitrogen-related leaf traits. Despite a fast initial recovery of species diversity and functional composition, there were still important structural and carbon stock differences between old-growth secondary and pristine forest, which suggests that a full recovery of secondary forests might take much longer than currently shown. As such, the aboveground carbon stocks of 200+ year old forest were only 57% of those in the pristine reference forest, which suggests a slow recovery of aboveground carbon stocks, although more research is needed to confirm this observation. The results of this study highlight the need for more in-depth studies on forest recovery in Central Africa, to gain insight into the processes that control biodiversity and carbon stock recovery.

Data from: Impact of a hurricane on the herpetofaunal assemblages of a successional chronosequence in a tropical dry forest

Land‐use change is the main cause of deforestation and degradation of tropical forest in Mexico. Frequently, these lands are abandoned leading to a mosaic of natural vegetation in secondary succession. Further degradation of the natural vegetation in these lands could be exacerbated by stochastic catastrophic events such as hurricanes. Information on the impact of human disturbance parallel to natural disturbance has not yet been evaluated for faunal assemblages in tropical dry forests. To evaluate the response of herpetofaunal assemblages to the interaction of human and natural disturbances, we used information of pre‐ and post‐hurricane herpetofaunal assemblages inhabiting different successional stages (pasture, early forest, young forest, intermediate forest, and old growth forest) of dry forest. Herpetofaunal assemblages were surveyed in all successional stages two years before and two years after the hurricane Jova that hit the Pacific Coast of Mexico on October 2011. We registered 4093 individuals of 61 species. Overall, there were only slight effects of successional stage, hurricane Jova or the interaction between them on abundance, observed species richness and diversity of the herpetofauna. However, we found marked changes in estimated richness and composition of frogs, lizards, and snakes among successional stages in response to hurricane Jova. Modifications in vegetation structure as result of hurricane pass promoted particular changes in each successional stage and taxonomic group (anurans, lizards, and snakes). Secondary forests at different stages of succession may attenuate the negative effects of an intense, short‐duration, and low‐frequency natural disturbance such as hurricane Jova on successional herpetofaunal trajectories and species turnover.

Data from: Nonrandom, diversifying processes are disproportionately strong in the smallest size classes of a tropical forest

A variety of ecological processes influence diversity and species composition in natural communities. Most of these processes, whether abiotic or biotic, differentially filter individuals from birth to death, thereby altering species' relative abundances. Nonrandom outcomes could accrue throughout ontogeny, or the processes that generate them could be particularly influential at certain stages. One long-standing paradigm in tropical forest ecology holds that patterns of relative abundance among mature trees are largely set by processes operating at the earliest life cycle stages. Several studies confirm filtering processes at some stages, but the longevity of large trees makes a rigorous comparison across size classes impossible without long-term demographic data. Here, we use one of the world's longest-running, plot-based forest dynamics projects to compare nonrandom outcomes across stage classes. We considered a cohort of 7,977 individuals in 186 species that were alive in 1971 and monitored in 13 mortality censuses over 42 y to 2013. Nonrandom mortality with respect to species identity occurred more often in the smaller rather than the larger size classes. Furthermore, observed nonrandom mortality in the smaller size classes had a diversifying influence; species richness of the survivors was up to 30% greater than expected in the two smallest size classes, but not greater than expected in the larger size classes. These results highlight the importance of early life cycle stages in tropical forest community dynamics. More generally, they add to an accumulating body of evidence for the importance of early-stage nonrandom outcomes to community structure in marine and terrestrial environments.

Data from: Nitrogen saturation in humid tropical forests after 6 years of nitrogen and phosphorus addition: hypothesis testing

Nitrogen (N) saturation hypothesis suggests that when an ecosystem reaches N-saturation, continued N input will cause increased N leaching, nitrous oxide (N2O) emission, and N mineralization and nitrification rates. It also suggests that a different element will become the main limiting factor when N saturation has been reached. Although this hypothesis has been tested in temperate forests, whether they can be directly applied to N-saturated tropical forests remain poorly addressed. To test this hypothesis, soil inorganic N, soil N mineralization and nitrification rate, soil N2O emission rate and nitrate (inline image) leaching rate were measured in an N-saturated old-growth tropical forest in southern China, after 6 years of N and P addition. We hypothesized that N addition would stimulate further N saturation, but P addition might alleviate N saturation. As expected, our results showed that six continuous years of experimental N addition did cause further N saturation, which was indicated by significant increases in soil inorganic N concentration, N2O emission and nitrate (inline image) leaching. However, in contrast to our expectations, N addition significantly decreased in situ rates of net N mineralization and nitrification, which could be related to associated changes in enzyme activity and microbial community composition. On the other hand, P addition mitigated N saturation, as expected. Soil inorganic N concentration, N2O emission and inline image leaching decreased significantly after P addition, but the net rates of N mineralization and nitrification were significantly increased. Our results provide a new understanding of the N saturation hypothesis, suggesting that the effects of long-term N deposition on net N mineralization and nitrification rates in N-saturated tropical forests can be negative and that P addition can alleviate N saturation in such tropical systems.

Data from: Comparing forest structure and biodiversity on private and public land: secondary tropical dry forests in Costa Rica

Secondary forests constitute a substantial proportion of tropical forestlands. These forests occur on both public and private lands and different underlying environmental variables and management regimes may affect post‐abandonment successional processes and resultant forest structure and biodiversity. We examined whether differences in ownership led to differences in forest structure, tree diversity, and tree species composition across a gradient of soil fertility and forest age. We collected soil samples and surveyed all trees in 82 public and 66 private 0.1‐ha forest plots arrayed across forest age and soil gradients in Guanacaste, Costa Rica. We found that soil fertility appeared to drive the spatial structure of public vs. private ownership; public conservation lands appeared to be non‐randomly located on areas of lower soil fertility. On private lands, areas of crops/pasture appeared to be non‐randomly located on higher soil fertility areas while forests occupied areas of lower soil fertility. We found that forest structure and tree species diversity did not differ significantly between public and private ownership. However, public and private forests differed in tree species composition: 11 percent were more prevalent in public forest and 7 percent were more prevalent in private forest. Swietenia macrophylla, Cedrela odorata, and Astronium graveolens were more prevalent in public forests likely because public forests provide stronger protection for these highly prized timber species. Guazuma ulmifolia was the most abundant tree in private forests likely because this species is widely consumed and dispersed by cattle. Furthermore, some compositional differences appear to result from soil fertility differences due to non‐random placement of public and private land holdings with respect to soil fertility. Land ownership creates a distinctive species composition signature that is likely the result of differences in soil fertility and management between the ownership types. Both biophysical and social variables should be considered to advance understanding of tropical secondary forest structure and biodiversity.

Data from: Anthropogenic disturbance of tropical forests threatens pollination services to açaí palm in the Amazon river delta

The açaí palm Euterpe oleracea Mart. in the Amazon river delta has seen rapid expansion to meet increased demand for its fruit. This has been achieved by transforming lowland forest habitats (floodplains) into simplified agroforests and intensive plantation in upland areas. As açaí palm makes an important contribution to the economy and food security of local communities, identifying management approaches that support biodiversity and ecosystem processes that underpin fruit production on açaí farms is essential. We compared flower-visitor communities and açaí fruit production in floodplain forests and upland plantations, across gradients of local management intensity (i.e. açaí density per ha) and surrounding forest cover. The relative contribution of biotic pollination and degree of pollen limitation were assessed using insect exclusion and hand-pollination experiments. We found that açaí flower visitors are highly diverse (c. 200 distinct taxa) and had variable responses to disturbance. Bee visitation was higher in floodplains and positively related to surrounding forest cover, but other flower visitors, including specialised curculionid beetles, were unresponsive to changes in surrounding forest cover. However, intensive management practices (i.e. high açaí palm densities) in floodplains and uplands had contrasting effects on flower-visitor communities, with flower-visitor richness being lower on intensively managed floodplain farms and ant densities being higher on intensive upland farms. Pollination experiments revealed açaí palm to be highly dependent on biotic pollination. Fruit set in open-pollinated inflorescences was positively related to flower-visitor richness and specialised curculionid beetle visitation, whereas the presence of ants on inflorescences had a negative effect. Synthesis and applications. Our study shows that pollinators are essential for açaí fruit production, but that intensive farming practices have eroded the relationship between surrounding forest cover and ecosystem function in floodplains (i.e. conversion of native forest into simplified agroforests) and increased the frequency of antagonistic interactions in uplands (e.g. high ant densities). These findings underline the value of extensive management practices, such as the maintenance of other tree species within farms and adjacent unmanaged forest patches, to ensure the long-term sustainability of açaí fruit production in the Amazon river delta.

Data from: Lianas reduce carbon accumulation and storage in tropical forests

Tropical forests store nearly 30% of global terrestrial carbon and contribute to 40% of the global terrestrial carbon sink. By affecting tree growth and survival, lianas impact the carbon balance of these forests. Here we demonstrate with a 3-y experiment that lianas substantially reduce forest-level carbon uptake and storage. This study is, to our knowledge, the first direct demonstration of liana effects at the ecosystem scale and illustrates the important role of lianas in tropical forests, particularly with respect to carbon budgets. Lianas are increasing in biomass and productivity throughout the tropics, and thus our findings have even greater relevance in terms of the fate of the tropical carbon balance, as well as for global atmospheric CO2 levels, in a changing climate.

Data from: Growth responses to soil water potential indirectly shape local species distributions of tropical forest seedlings

1. Local tree species distributions in tropical forests correlate strongly with soil water availability. However, it is unclear how species distributions are shaped by demographic responses to soil water availability. Specifically, it remains unknown how growth affects species distributions along water availability gradients relative to mortality. 2. We quantified spatial variation in dry season soil water potential (SWP) in the moist tropical forest on Barro Colorado Island, Panama, and used a hierarchical Bayesian approach to evaluate relationships between demographic responses of naturally regenerating seedlings to SWP (relative growth rates and first-year mortality) and species distributions along the SWP gradient for 62 species. We also tested whether species that were more abundant at the wet or dry end of the gradient performed better (1) at their 'home end' of the gradient ('best at home' hypothesis) and (2) 'at home' compared to co-occurring species ('home advantage' hypothesis). 3. Four and five species responded significantly to SWP in terms of growth or mortality, respectively. Growth (but not mortality) responses were positively related to species distributions along the SWP gradient; species with a more positive (negative) growth response to SWP were more abundant at higher (lower) SWP, i.e. at wetter (drier) sites. In addition, wet distributed species grew faster on the wet end of the SWP gradient than on the dry end ('best at home') and grew faster on the wet end than dry distributed species ('home advantage'). Mortality rates declined with seedling size for all species. Thus, seedling growth responses to SWP indirectly shaped local species distributions by influencing seedling size and thereby mortality risk. 4. Synthesis. By demonstrating how growth responses to spatial variation in soil water availability affect species distributions, we identified a demographic process underlying niche differentiation on hydrological gradients in tropical forests. Recognizing the role of these growth responses in shaping species distributions should improve understanding of tropical forest composition and diversity along rainfall gradients and with climate change.

Data from: Habitat preference and den characterization of Indian Pangolin (Manis crassicaudata) in a tropical lowland forested landscape of southwest Sri Lanka

The Indian pangolin (Manis crassicaudata) is under threat due to hunting for local consumption and illegal trafficking of scales and meat. The dearth of scientific studies on the ecology of the M. crassicaudata has impaired accurate assessments of its conservation needs. This study investigated the habitat preference and burrow characteristics of M. crassicaudata in a tropical lowland rainforest in southwest Sri Lanka. A total of 75 burrows (54 feeding burrows and 21 resting burrows) of M. crassicaudata in four different habitat types i.e. secondary forest, Pine-dominated forest, rubber cultivations and tea-dominated home gardens bordering forest were observed using fixed-width transects in order to characterize resting and feeding burrows of this species. The highest density of resting burrows was recorded from the secondary forest (4ha-1), followed by rubber cultivations (2.5ha-1) while no resting burrows were recorded in Pine-dominated forest and tea-dominated home gardens bordering forest. Feeding burrows were more abundant in Pine-dominated forest (5.7ha-1). The burrow depth, burrow opening height and width were significantly larger in resting burrows compared to feeding burrows. Resting burrows were located at higher elevations (75-100m) with moderately high slopes (450-600), dense canopy cover (>75%) and away from human habitation. Feeding burrows showed a greater variability in terms of associated environmental features. The study further revealed that Indian pangolins exclusively prefer habitat with rocks and boulders under which they dig resting burrows while the location of feeding burrows largely overlaps with the distribution of prey species. The resting burrow design consisted of a bending tunnel that initially slopes downward and then gradually inclines at an angle between 20 and 300, leading to the resting chamber. Our study highlights the importance of conserving fragmented secondary natural forests in changing landscapes of the southwest lowlands of Sri Lanka as these habitats appear to be critical to sustaining populations of M. crassicaudata.

Data from: Yet another empty forest: considering the conservation value of a recently established tropical nature reserve

The primary approach used to conserve tropical biodiversity is in the establishment of protected areas. However, many tropical nature reserves are performing poorly and interventions in the broader landscape may be essential for conserving biodiversity both within reserves and at large. Between October 2010 and 2012, we conducted bird surveys in and around a recently established nature reserve in Xishuangbanna, China. We constructed a checklist of observed species, previously recorded species, and species inferred to have occurred in the area from their distributions and habitat requirements. In addition, we assessed variation in community composition and habitat specificity at a landscape-scale. Despite the fact that the landscape supports a large area of natural forest habitat (~50,000 ha), we estimate that >40% of the bird fauna has been extirpated and abundant evidence suggests hunting is the primary cause. A large proportion (52%) of the bigger birds (>20 cm) were extirpated and for large birds there was a U-shaped relationship between habitat breadth and extirpation probability. Habitat specificity was low and bird communities were dominated by widespread species of limited conservation concern. We question whether extending tropical protected area networks will deliver desired conservation gains, unless much greater effort is channeled into addressing the hunting problem both within existing protected areas and in the broader landscape.

Data from: Reconciling timber extraction with biodiversity conservation in tropical forests using reduced-impact logging

1. Over 20% of the world's tropical forests have been selectively logged, and large expanses are allocated for future timber extraction. Reduced-impact logging (RIL) is being promoted as best practice forestry that increases sustainability and lowers CO2 emissions from logging, by reducing collateral damage associated with timber extraction. RIL is also expected to minimize the impacts of selective logging on biodiversity, although this is yet to be thoroughly tested. 2. We undertake the most comprehensive study to date to investigate the biodiversity impacts of RIL across multiple taxonomic groups. We quantified birds, bats and large mammal assemblage structures, using a before-after control-impact (BACI) design across 20 sample sites over a 5-year period. Faunal surveys utilized point counts, mist nets and line transects and yielded >250 species. We examined assemblage responses to logging, as well as partitions of feeding guild and strata (understorey vs. canopy), and then tested for relationships with logging intensity to assess the primary determinants of community composition. 3. Community analysis revealed little effect of RIL on overall assemblages, as structure and composition were similar before and after logging, and between logging and control sites. Variation in bird assemblages was explained by natural rates of change over time, and not logging intensity. However, when partitioned by feeding guild and strata, the frugivorous and canopy bird ensembles changed as a result of RIL, although the latter was also associated with change over time. Bats exhibited variable changes post-logging that were not related to logging, whereas large mammals showed no change at all. 4. Indicator species analysis and correlations with logging intensities revealed that some species exhibited idiosyncratic responses to RIL, whilst abundance change of most others was associated with time. 5. Synthesis and applications. Our study demonstrates the relatively benign effect of reduced-impact logging (RIL) on birds, bats and large mammals in a neotropical forest context, and therefore, we propose that forest managers should improve timber extraction techniques more widely. If RIL is extensively adopted, forestry concessions could represent sizeable and important additions to the global conservation estate – over 4 million km2.

Data from: Litter removal in a tropical rain forest reduces fine root biomass and production but litter addition has few effects

Many old-growth lowland tropical rain forests are potentially nutrient limited, and it has long been thought that many such forests maintain growth by recycling nutrients from decomposing litter. We investigated this by continuously removing (for ten years) freshly fallen litter from five (45 m x 45 m) plots, adding it to five other plots, there were five controls. From monthly measures over one year we show that litter removal caused lower: fine root (≤2 mm diameter) standing mass, fine root standing length, fine root length production and fine root length survivorship. Litter addition did not significantly change fine root mass or length or production. Nutrient concentrations in fine roots in litter removal plots were lower than those in controls for nitrogen (N), calcium (Ca) and magnesium (Mg), concentrations in fine roots in litter addition plots were higher for N and Ca. Chronic litter removal has resulted in reduced forest growth due to lack of nutrients, probably nitrogen. Conversely, long-term litter addition has had fewer effects.

Data from: What controls variation in carbon use efficiency among Amazonian tropical forests?

Why do some forests produce biomass more efficiently than others? Variations in Carbon Use Efficiency (CUE: total Net Primary Production (NPP)/ Gross Primary Production (GPP)) may be due to changes in wood residence time (Biomass/NPPwood), temperature, or soil nutrient status. We tested these hypotheses in 14, one ha plots across Amazonian and Andean forests where we measured most key components of net primary production (NPP: wood, fine roots, and leaves) and autotrophic respiration (Ra; wood, rhizosphere, and leaf respiration). We found that lower fertility sites were less efficient at producing biomass and had higher rhizosphere respiration, indicating increased carbon allocation to belowground components. We then compared wood respiration to wood growth and rhizosphere respiration to fine root growth and found that forests with residence times <40 yrs had significantly lower maintenance respiration for both wood and fine roots than forests with residence times >40 yrs. A comparison of rhizosphere respiration to fine root growth showed that rhizosphere growth respiration was significantly greater at low fertility sites. Overall, we found that Amazonian forests produce biomass less efficiently in stands with residence times >40 yrs and in stands with lower fertility, but changes to long-term mean annual temperatures do not impact CUE.

Data from: Mapping tropical dry forest succession using multiple criteria spectral mixture analysis

Tropical dry forests (TDFs) in the Americas are considered the first frontier of economic development with less than 1% of their total original coverage under protection. Accordingly, accurate estimates of their spatial extent, fragmentation, and degree of regeneration are critical in evaluating the success of current conservation policies. This study focused on a well-protected secondary TDF in Santa Rosa National Park (SRNP) Environmental Monitoring Super Site, Guanacaste, Costa Rica. We used spectral signature analysis of TDF ecosystem succession (early, intermediate, and late successional stages), and its intrinsic variability, to propose a new multiple criteria spectral mixture analysis (MCSMA) method on the shortwave infrared (SWIR) of HyMap image. Unlike most existing iterative mixture analysis (IMA) techniques, MCSMA tries to extract and make use of representative endmembers with spectral and spatial information. MCSMA then considers three criteria that influence the comparative importance of different endmember combinations (endmember models): root mean square error (RMSE); spatial distance (SD); and fraction consistency (FC), to create an evaluation framework to select a best-fit model. The spectral analysis demonstrated that TDFs have a high spectral variability as a result of biomass variability. By adopting two search strategies, the unmixing results showed that our new MCSMA approach had a better performance in root mean square error (early: 0.160/0.159; intermediate: 0.322/0.321; and late: 0.239/0.235); mean absolute error (early: 0.132/0.128; intermediate: 0.254/0.251; and late: 0.191/0.188); and systematic error (early: 0.045/0.055; intermediate: −0.211/−0.214; and late: 0.161/0.160), compared to the multiple endmember spectral mixture analysis (MESMA). This study highlights the importance of SWIR in differentiating successional stages in TDFs. The proposed MCSMA provides a more flexible and generalized means for the best-fit model determination than common IMA methods.