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Data and R code for: "Nineteenth-century land use shape the current occurrence of some plant species, but weakly affects richness and total composition of Central European grasslands"'
<ol> <li> <p><strong><code>IndVal.all.habitats.csv</code></strong>: the results of the IndVal statistics (<a href="https://doi.org/10.1111/j.1600-0706.2010.18334.x">De Cáceres et al. 2013</a>) for 1,498 species for the historical land use categories calculated across the entire dataset;</p> </li> <li> <p><code><strong>IndVal.separate.habitats.csv</strong></code>: the results of the IndVal statistics for 1,498 species for the historical land use categories calculated for each habitat type (dry grasslands, mesic grasslands, wet grasslands) separately;</p> </li> <li> <p><code><strong>ecological.and.disturbance.values.csv</strong></code>: the original Ellenberg-type and disturbance indicator values, and the varimax-rotated components (‘RC’) used in the analysis (data obtained from <a href="https://doi.org/10.1111/jvs.13168">Tichý et al. 2023</a> and <a href="http://dx.doi.org/10.1111/geb.13603">Midolo et al. 2023</a>; accessible at the FloraVeg.eu website <a href="https://floraveg.eu/download/" target="_new" rel="noreferrer">https://floraveg.eu/download/</a>);</p> </li> <li> <p><strong>R code and data for reproducibility</strong>. The R code is for illustration purposes only and is based on a subset of 1,184 mesic grassland vegetation plots located in the Czech Republic and in the study area. This is part of the Czech National Phytosociological Database (<a href="https://www.preslia.cz/article/387">Chytrý & Rafajová 2003</a>) and the European Vegetation Archive (<a href="https://doi.org/10.1111/avsc.12191">Chytrý et al. 2016</a>). The data includes the following:</p> <ul> <li> <p> <code>data</code> folder:</p> </li> </ul> </li> </ol> <ul> <li> <ul> <li> <ul> <li>i. <code>indicator.values.csv</code>: the original indicator values for 831 species;</li> <li>ii. <code>plot.data.csv</code>: data for each of the 1,184 vegetation plots, including their historical land use, plot size, bioclimatic variables (‘bio’; <a href="http://dx.doi.org/10.1038/sdata.2017.122">Karger et al. 2017</a>), and soil pH (<a href="https://doi.org/10.1371%2Fjournal.pone.0169748">Hengl et al. 2017</a>);</li> <li>iii. <code>species.matrix.csv</code>: community matrix reporting the relative abundance of species (columns) and plot sites (rows).</li> </ul> </li> <li>R scripts for species richness, species composition, and species indicator analyses. R script are also rendered in .html with R Markdown.</li> </ul> </li> </ul>
Questionnaire survey on European veterinarians
<p>This is the questionnaire that has been used for WP2.</p>
European Social Survey Data Round 1-11 merged
Open the record for dataset details and reuse information.
FIGURE 19 in Evolutionary significance of the retiolitine Gothograptus (Graptolithina) with four new species from the Silurian of the East European Platform (Baltica), Poland and Lithuania
FIGURE 19. Mature tubarium with appendix of Gothograptus obtectus Kozłowska-Dawidziuk, 1990 from the Bartoszyce IG- 1 core, depth 1677.5 m, lundgreni Biozone, Poland, ZPAL G.55/48. A. enlargement of distal part of specimen. B. enlargement of proximal end. C. whole specimen, reverse view. Abbreviations: lat. ap.—lateral apertural.
FIGURE 16 in Evolutionary significance of the retiolitine Gothograptus (Graptolithina) with four new species from the Silurian of the East European Platform (Baltica), Poland and Lithuania
FIGURE 16. Tubaria of mature colonies of Gothograptus domeyki n. sp., Šiupyliai-69 core, upper part of lundgreni Biozone, Lithuania. A–B. finite tubarium with seven pairs of thecae and appendix, holotype, depth 1009,1 m, VU RET-13; A. ventrolateral view of specimen; B. enlargement of thick ancora and broken outer ancora, oblique view. C, H. finite tubarium, depth 1010.0 m, VU RET-14; C. enlargement of two thecae; H. enlargement of proximal end. D–E. fragment of finite tubarium, paratype, depth 1010.0 m, VU RET-15; D. whole specimen, ventro-lateral view; E. proximal thecae with spines. F–G. proximal end of young tubarium, depth 1010.0 m, VU RET-16; F. enlargement of proximal theca; G. enlargement of ancora
FIGURE 18 in Evolutionary significance of the retiolitine Gothograptus (Graptolithina) with four new species from the Silurian of the East European Platform (Baltica), Poland and Lithuania
FIGURE 18. Details of mature tubarium of Gothograptus kozlowskii Kozłowska-Dawidziuk, 1990 holotype, ZPAL G.XIII/43, Baltic erratic boulder 147 from Jarosławiec, Poland. A. ventral view; B. lateral view, reverse side of tubarium; C. proximal end, outside view; D. orifice of th51; E. opening of appendix.
FIGURES 20–32. 20–29 in Rediscovery of Calymmochilus russoi Gibson, 1995 (Hymenoptera, Chalcidoidea, Eupelmidae), and revision of European Calymmochilus Masi, 1919
FIGURES 20–32. 20–29, Calymmochilus bini, holotype ♀: 20, lateral habitus; 21, dorsal habitus; 22, mesosoma, lateral; 23, syntergum, lateral; 24, syntergum, dorsal; 25, mesosoma, dorsal; 26, antenna; 27, head, two-thirds; 28, fore wing; 29, head, dorsal. 30–32, C. delphinus: 30, mesosoma, lateral (2017-27); 31, syntergum, lateral (2017-27); 32 head, frontal (2017-09). Scale bars represent 1 mm in 20, 21 and 0.2 mm in 22–32.
FIGURES 53–69. 53–57 in Rediscovery of Calymmochilus russoi Gibson, 1995 (Hymenoptera, Chalcidoidea, Eupelmidae), and revision of European Calymmochilus Masi, 1919
FIGURES 53–69. 53–57, fore wing venation variability in Calymmochilus dispar ♂: 53, allotype; 54, specimen 2017-04 from type locality; 55, specimen 2017-30, both wings; 56, specimen 2017-31, both wings; 57, specimen 2017-05. 58–60, fore wing venation in Calymmochilus ♂: 58, C. atratus 2017-28; 59, C. delphinus 2017-08; 60, C. subnubilus 2017-06. 61, head and mesosoma, lateral, C. dispar ♂ (allotype); 62, head and mesosoma, lateral, C. subnubilus ♂ (2017-06). 63–66, pedicel and basal flagellomeres in Calymmochilus ♂: 63, C. atratus (2017-28); 64, C. delphinus (2017-07); 65, C. dispar (allotype); 66, C. subnubilus (2017-06). 67–69, metanotum and propodeum in Calymmochilus ♂: 67, C. dispar (2017-04); 68, C. subnubilus (2017-06); 69, C. delphinus (2017-07). Scale bars represent 0.2 mm.
FIGURE 5 in Identification of Ceriodaphnia Dana, 1853 (Crustacea: Cladocera) taxa from European Russia based on ephippial morphology
FIGURE 5. Ceriodaphnia rotunda (Straus, 1820), ephippium from a ditch from Lake Svetets, Vladimir Area. A, lateral view of ephippium. B, its dorsal portion, lateral view. C, dorsum, lateral view. D, sculpture of central portion. E, sculpture of posterior portion. F, ventral portion. Scale bars: 0.1 mm for A; 0.01 mm for B–F.
FIGURE 11 in Identification of Ceriodaphnia Dana, 1853 (Crustacea: Cladocera) taxa from European Russia based on ephippial morphology
FIGURE 11. Ceriodaphnia reticulata (Jurine, 1820), ephippial female from Cherepovetskoe Reservoir, Vologda Area. A, lateral view of female. B, dorso-lateral view of ephippium. C, lateral view. D, fragment of ephippium dorsal portion, lateral view. E–F, sculpture of its central portion. Scale bars: 0.1 mm for A–C; 0.01 mm for D–F.
FIGURE 1. Ceriodaphnia megops Sars, 1862 in Identification of Ceriodaphnia Dana, 1853 (Crustacea: Cladocera) taxa from European Russia based on ephippial morphology
FIGURE 1. Ceriodaphnia megops Sars, 1862, ephippial female from Lake Glubokoe, Moscow Area. A, lateral view of female. B, latero-dorsal view of ephippium. C, dorsal view. D, fragment of ephippium dorsal portion, dorsal view. E, dorso-lateral keel, dorsal view. F, its lateral view. G–H, ventral portion of ephippium. Scale bars: 0.1 mm for A–D, H; 0.01 mm for E–G.
FIGURES 16–18 in New European Lepidocyrtus Bourlet, 1839 (Collembola, Entomobryidae) with the first description of feeding-related dancing behaviour in Collembola
FIGURES 16–18. Lepidocyrtus chorus sp. nov. 16, th.II dorsal chaetotaxy (left side), pse—pseudoporus, circles–ciliated chaetae; 17, th.III dorsal chaetotaxy (left side), pse—pseudoporus; 18, abd.I dorsal chaetotaxy (left side), pse—pseudoporus.
FIGURES 5–8 in New European Lepidocyrtus Bourlet, 1839 (Collembola, Entomobryidae) with the first description of feeding-related dancing behaviour in Collembola
FIGURES 5–8. Lepidocyrtus chorus sp. nov. holotype. 5, habitus lateral (in alcohol); 6, dorsal head (in alcohol); 7 habitus of lateral body (on slide) showing pollen grains coming out of the intestine; 8 dorsal head (on slide).
FIGURE 11 in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 11. Phyllodicola petiti (Delamare Deboutteville & Laubier, 1960), female. A, ectosoma and proximal part of endosoma; B, genital apertures and copulatory pores (arrowed); ventral; C, antennule; D, antenna; E, maxilliped. Scale bars: A, 200 µm, B, 100 µm, C–E, 25 µm.
FIGURE 5 in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 5. Herpyllbius cluthensis sp. nov. female. A, habitus of holotype female showing small ectosoma (viewed obliquely and appearing foreshortened) bearing paired egg sacs and bipartite endosoma comprising long proximal part and expanded apical part, with small ring of host tissue at penetration site; B, ectosoma of paratype female, dorsal view showing fragments of copepodid exuviae attached near posterior margin (arrowed); C, expanded apical part of endosoma of paratype female; D, paired genital apertures, ventral view. Scale bars: A, 1 mm, B–D, 0.5 mm.
FIGURE 1 in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 1. Bradophila minuta sp. nov. A, habitus of embedded adult female, dorsal view showing elongate flattened endosoma; B, ectosoma and basal part of endosoma of ovigerous female, ventral; C, ectosoma and base of endosoma of female, posterior; D, ectosoma of female, dorsal; E, ectosoma of female, ventral view showing outline of seminal receptacles, and median copulatory pore (arrowed). Scale bars: A, 0.5 mm, B–D, 200 µm, E, 100 µm.
FIGURE 8. Eurysilenium truncatum M. Sars, 1870. A in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 8. Eurysilenium truncatum M. Sars, 1870. A, detached endosoma of female from Eucranta villosa; B, ectosoma of ovigerous female from Eunone sp., dorsal, with cephalothorax of attached male (arrowed) just visible between genital apertures of female; C, same, ventral view with male removed; D, curved egg sac detached from female from Eunone sp.; E, genital apertures of female with male attached, ventral. Scale bars: A, 1.0 mm, B–D, 0.5 mm, E, 200 µm.
FIGURE 13 in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 13. Cyclorhiza megalova Gotto & Leahy, 1988, female. A, spent adult female with single egg string attached, ventral view showing egg string comprising central axis and large developing eggs plus empty egg membranes (arrowed); B, adult female showing length of intact egg sac relative to ectosoma length; C, adult female with ectosoma full of developing eggs; D, developing ectosoma; E, early stage female, lateral view showing paired limbs, genital apertures and finely striated dorsal surface integument; F, detail of developing female anterior end, showing spinules (arrowed) located lateral and medial to genital aperture; G, antennule; H, antenna; I, maxilliped. Scale bars A, C–D, 200 µm, B, 1 mm, E, 50 µm, F, 100 µm, G–I, 25 µm.
FIGURE 17 in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 17. Lanassicola arcticus gen. et sp. nov. female. A, ovigerous female with 3 males attached, ventral view; B, head region, ventral view showing location of antennae (ant) and maxillae (mx) relative to stalk; C, posterior margin of trunk, showing attachment of egg sacs at genital apertures; D, maxilla. Scale bars: A, 0.5 mm, B, 50 µm, C, 100 µm, D, 25 µm.
FIGURE 21 in Mesoparasitic copepods (Copepoda: Cyclopoida) associated with polychaete worms in European seas
FIGURE 21. Lanassicola dorsilobatus gen. et sp. nov. female. A, habitus, dorsal view; B, head region, ventral view showing location of antennules, antennae and maxillae relative to stalk; C, posterior region of trunk, ventral view showing paired genital apertures; D, antenna; E, maxilla. Scale bars: A, 0.5 mm, B–C, 200 µm, D–E, 25 µm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.