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1,551 results for “Availability”

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Data from: Phenology of farmland floral resources reveals seasonal gaps in nectar availability for bumblebees

Floral resources are known to be important in regulating wild pollinator populations and are therefore an important component of agri‐environment and restoration schemes which aim to support pollinators and their associated services. However, the phenology of floral resources is often overlooked in these schemes – a factor which may be limiting their success. Our study characterises and quantifies the phenology of nectar resources at the whole‐farm scale on replicate farms in Southwestern UK throughout the flowering season. We quantify the corresponding nectar demands of a subset of common wild pollinators (bumblebees) to compare nectar supply and pollinator demand throughout the year, thereby identifying periods of supply‐demand deficit. We record strong seasonal fluctuations in farmland nectar supplies, with two main peaks of nectar production (May and July) and a considerable 'June Gap' in‐between. March and August/September are also periods of low nectar availability. Comparing the phenology of nectar supply with the phenology of bumblebee nectar demand reveals 'hunger gaps' during March and much of August/September when supply is unlikely to meet demand. Permanent pasture and woodland produced the greatest share of farmland nectar because of their large area, however linear features such as hedgerows and field margins provided the greatest nectar per unit area. 50% of total nectar was supplied by just three species (Allium ursinum, Cirsium arvense and Trifolium repens), but some less productive species (e.g. Hedera helix and Taraxacum agg.) were important in ensuring phenological continuity of nectar supply. Synthesis and applications. By comparing the phenology of farmland nectar supply with the phenology of pollinator demand, we demonstrate that the timing of nectar supply may be as important as total nectar production in limiting farmland pollinator populations. Considering phenology in the design of agri‐environment or restoration schemes is therefore likely to improve their suitability for pollinators. Plant species which flower during periods of resource deficit (early spring and late summer) should be prioritised in schemes which aim to conserve or restore pollinator populations. Maintaining a range of semi‐natural habitats with complementary flowering phenologies (e.g. woodland, hedgerows and field‐margins) will ensure a more continuous supply of nectar on farmland, thereby supporting pollinators for their entire flight season.

opencc-zeroDec 2018View details →
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Data from: Nonadditive effects of consumption in an intertidal macroinvertebrate community are independent of food availability but driven by complementarity effects

Suboptimal environmental conditions are ubiquitous in nature and commonly drive the outcome of biological interactions in community processes. Despite the importance of biological interactions for community processes, knowledge on how species interactions are affected by a limiting resource, e.g. low food availability, remains limited. Here, we tested whether variation in food supply causes non-additive consumption patterns, using the macroinvertebrate community of intertidal sandy beaches as a model system. We quantified isotopically labelled diatom consumption by three macroinvertebrate species (Bathyporeia pilosa, Haustorius arenarius and Scolelepis squamata) kept in mesocosms in either monoculture or a 3-species community at a range of diatom densities. Our results show that B. pilosa was the most successful competitor in terms of consumption at both high and low diatom density, while H. arenarius and especially S. squamata consumed less in a community than in their respective monocultures. Non-additive effects on consumption in this macroinvertebrate community were present and larger than mere additive effects, and similar across diatom densities. The underlying species interactions, however, did change with diatom density. Complementarity effects related to niche-partitioning were the main driver of the net diversity effect on consumption, with a slightly increasing contribution of selection effects related to competition) with decreasing diatom density. For the first time we showed that non-additive effects of consumption are independent of food availability in a macroinvertebrate community. This suggests that in communities with functionally different, and thus complementary, species, non-additive effects can arise even when food availability is low. Hence, at a range of environmental conditions, species interactions hold important potential to alter ecosystem functioning.

opencc-zeroDec 2017View details →
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Data from: Impact of past climatic changes and resource availability on the population demography of three food-specialist bees

Past climate change is known to have strongly impacted current patterns of genetic variation of animals and plants in Europe. However, ecological factors also have the potential to influence demographic history, and thus patterns of genetic variation. In this study, we investigated the impact of past climate, and also the potential impact of host plant species abundance, on intraspecific genetic variation in three co-distributed and related specialized solitary bees of the genus Melitta with very similar life history traits and dispersal capacities. We sequenced five independent loci in samples collected from the three species. Our analyses revealed that the species associated with the most abundant host plant species (Melitta leporina) displays unusually high genetic variation, to an extent that is seldom reported in phylogeographic studies of animals and plants. This suggests a potential role of food resource abundance in determining current patterns of genetic variation in specialized herbivorous insects. Patterns of genetic variation in the two other species indicated lower overall levels of diversity, and that M. nigricans could have experienced a recent range expansion. Ecological niche modelling of the three Melitta species and their main host plant species suggested a strong reduction in range size during the last glacial maximum. Comparing observed sequence data with data simulated using spatially explicit models of coalescence suggests that M. leporina recovered a range and population size close to their current levels at the end of the last glaciation, and confirms recent range expansion as the most likely scenario for M. nigricans. Overall, this study illustrates that both demographic history and ecological factors may have contributed to shape current phylogeographic patterns.

opencc-zeroDec 2014View details →
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Data from: Water availability as an agent of selection in introduced populations of Arabidopsis thaliana: impacts on flowering time evolution

Flowering is one of the most influential events in the life history of a plant and one of the main determinants of reproductive investment and lifetime fitness. It is also a highly complex trait controlled by dozens of genes. Understanding the selective pressures influencing time to flowering, and being able to reliably predict how it will evolve in novel environments, are unsolved challenges for plant evolutionary geneticists. Using the model plant species, Arabidopsis thaliana, we examined the impact of simulated high and low winter precipitation levels on the flowering time of naturalized lines from across the eastern portion of the introduced North American range, and the fitness consequences of early versus late flowering. Flowering time order was significantly correlated across two environments—in a previous common garden experiment and in environmental chambers set to mimic mid-range photoperiod and temperature conditions. Plants in low water flowered earlier, had fewer basal branches and produced fewer fruits. Selection in both treatments favored earlier flowering and more basal branches. Our analyses revealed an interaction between flowering time and water treatment for fitness, where flowering later was more deleterious for fitness in the low water treatment. Our results are consistent with the hypothesis that differences in winter precipitation levels are one of the selective agents underlying a flowering time cline in introduced A. thaliana populations.

opencc-zeroDec 2014View details →
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Data from: Quantifying niche availability, niche overlap and competition for recruitment sites in plant populations without explicit knowledge of niche axes.

1. Niche availability, niche overlap and competitive ability are key determinants of the distribution and abundance of species. However, quantifying each of these components is difficult because it is not always possible to identify or measure relevant environmental gradients (niche axes) along which species might partition or compete for niche space. 2. We describe a method that uses seed addition experiments to quantify the number of 'safe-sites' (microsites suitable for a species to recruit from seed) at a location and show how this method can be used to quantify niche availability, niche overlap and competitive ability. We illustrate our approach using two seed addition experiments in grassland. 3. In the first experiment, we added seeds of one native and two exotic grass species, alone and in mixture, to plots that were arrayed along a gradient of soil moisture availability. We show that the three species partitioned safe-sites, implying that all three species could locally co-occur through niche partitioning, in part due to different responses to moisture availability. 4. In the second experiment, we added seeds of three commonly co-occurring native grass species, alone and in mixture, to plots with no obvious environmental gradients. One species outcompeted two others for site occupancy, allowing us to quantify both the degree of niche overlap and the relative ability of each species to compete for safe-site occupancy without a priori knowledge of the niche axes. Results from both experiments demonstrate the fine-scales at which species can partition niches to facilitate co-occurrence. 5. Synthesis. By conceptualising a plot of ground as containing a limited number of microsites that are safe for the recruitment of a given species, and using seed addition experiments to measure both the number of safe-sites and degree of safe-site overlap among species, we show how niche availability, niche overlap and competitive ability can be quantified at fine-scales without a priori knowledge of niche axes. Our approach allows questions about niche availability and competition for shared niche space to be empirically tested, and to examine how these processes vary along environmental gradients to shape species distributions and patterns of co-occurrence.

opencc-zeroDec 2018View details →
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Data from: The importance of phytoplankton biomolecule availability for secondary production

The growth and reproduction of animals is affected by their access to resources. In aquatic ecosystems, the availability of essential biomolecules for filter-feeding zooplankton depends greatly on phytoplankton. Here, we analyzed the biochemical composition, i.e., the fatty acid, sterol and amino acid profiles and concentrations as well as protein, carbon, nitrogen, and phosphorus content of 17 phytoplankton monocultures representing the seven most abundant phytoplankton classes in boreal and sub-arctic lakes. To examine how the differences in the biochemical composition between phytoplankton classes affect their nutritional quality for consumers, we assessed the performance of Daphnia, on these diets. Furthermore, we defined the most important biomolecules regulating the somatic growth and reproduction of Daphnia, expecting that higher concentrations of certain biomolecules are needed for reproduction than for growth. Finally, we combined these results with phytoplankton field data from over 900 boreal and sub-arctic lakes in order to estimate whether the somatic growth of Daphnia is sterol-limited when the natural phytoplankton communities are cyanobacteria-dominated. Our analysis shows that Daphnia grows best with phytoplankton rich in sterols, ω-3 fatty acids, protein, and amino acids. Their reproduction follows food sterol and ω-3 concentration as well as C:P-ratio being two times higher in Daphnia feeding on cryptophytes than any other diet. Interestingly, we found that a high dietary ω-6 fatty acid concentration decreases both somatic growth and reproduction of Daphnia. When combined with phytoplankton community composition field data, our results indicate that zooplankton is constantly limited by sterols in lakes dominated by cyanobacteria (≥40% of total phytoplankton biomass), and that the absence of cryptophytes can severely hinder zooplankton production in nature.

opencc-zeroDec 2016View details →
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Data from: Amount or pattern? Grassland responses to the heterogeneity and availability of two key resources

Patterns of resource availability and heterogeneity shape the composition, productivity, and dynamics of plant assemblages in a wide variety of terrestrial ecosystems. Despite this, the responses of plant assemblages to simultaneous changes in the availability and heterogeneity of more than a single resource are virtually unknown. To fill this gap, microcosms consisting of assemblages formed by Lolium perenne, Plantago lanceolata, Anthoxantum odoratum, Holcus lanatus, and Trifolium repens were grown in a factorial experiment with the following treatments: nutrient availability (NA), water availability (WA), spatial nutrient heterogeneity (NH), and temporal water heterogeneity (WH). Assemblages exhibited precise root foraging patterns in response to nutrient heterogeneity, which were modified by NA and WA. A series of two- and three-way interactions involving the four factors evaluated determined biomass production, the belowground : aboveground biomass ratio, the patterns of root biomass allocation with depth, and the relative contribution to aboveground biomass of Lolium and Anthoxanthum. In all cases, these interactions explained significant amounts of the variation found in the data. Our study demonstrates that considering the interactions between resource availability and heterogeneity allows for a refinement of predictions that can detectably reduce the error associated with extrapolating from single factor analyses.

opencc-zeroDec 2011View details →
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Data from: Earthworm activity and availability for meadow birds is restricted in intensively managed grasslands

1. Earthworms are an important prey for the endangered meadow birds of north-west Europe. Although intensive grassland management with high manure inputs generally promotes earthworm abundance, it may reduce the effective food availability for meadow birds through desiccation of the topsoil, which causes earthworms to remain deeper in the soil. 2. We studied the response of Red Worm Lumbricus rubellus, a detritivore, and Grey Worm Aporrectodea caliginosa, a geophage, to soil moisture profiles in the field and under experimental conditions. Surfacing earthworms were counted weekly in eight intensively managed grasslands (treated with high inputs of slurry by slit injection) with variable groundwater tables in the Netherlands. At each count, soil penetration resistance, soil moisture tension and groundwater level were measured, while air temperature and humidity were obtained from a nearby weather station. The response to variation in the vertical distribution of soil moisture was also experimentally studied in the two earthworm species. 3. In the field, earthworms' surfacing activity at night was negatively associated with soil moisture tension and positively by relative air humidity. Surprisingly, there was no effect of groundwater level; an important management variable in meadow bird conservation. Under experimental conditions, both L. rubellus and A. caliginosa moved to deeper soil layers (>20 cm) in drier soil moisture treatments, avoiding the upper layer when moisture levels dropped below 30%. 4. Synthesis and applications. We propose that in intensively managed grasslands with slurry application, topsoil desiccation reduces earthworm availability for meadow birds. This can be counteracted by keeping soil moisture tensions of the top soil above -15 kPa. We suggest that the late raising of groundwater tables in spring and the disturbance of the soil by slit injection of slurry increase topsoil desiccation. This decreases earthworm availability when it matters most for breeding meadow birds. Meadow bird conservation will benefit from revised manure application strategies that promote earthworm activity near or at the soil surface.

opencc-zeroDec 2018View details →
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Data from: Effects of growth rate, size, and light availability on tree survival across life stages: a demographic analysis accounting for missing values and small sample sizes

Background: Plant survival is a key factor in forest dynamics and survival probabilities often vary across life stages. Studies specifically aimed at assessing tree survival are unusual and so data initially designed for other purposes often need to be used; such data are more likely to contain errors than data collected for this specific purpose. Results: We investigate the survival rates of ten tree species in a dataset designed to monitor growth rates. As some individuals were not included in the census at some time points we use capture-mark-recapture methods both to allow us to account for missing individuals, and to estimate relocation probabilities. Growth rates, size, and light availability were included as covariates in the model predicting survival rates. The study demonstrates that tree mortality is best described as constant between years and size-dependent at early life stages and size independent at later life stages for most species of UK hardwood. We have demonstrated that even with a twenty-year dataset it is possible to discern variability both between individuals and between species. Conclusions: Our work illustrates the potential utility of the method applied here for calculating plant population dynamics parameters in time replicated datasets with small sample sizes and missing individuals without any loss of sample size, and including explanatory covariates.

opencc-zeroDec 2014View details →
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Data from: Effects of hummingbird morphology on specialization in pollination networks vary with resource availability

Specialization of species in interaction networks influences network stability and ecosystem functioning. Spatial and temporal variation in resource availability may provide insight into how ecological factors, such as resource abundance, and evolutionary factors, such as phylogenetically conserved morphological traits, influence specialization within mutualistic networks. We used independent measures of hummingbird abundance and resources (nectar), information on hummingbird traits and plant–hummingbird interactions to examine how resource availability and species' morphology influence the specialization of hummingbirds in three habitat types (forest, shrubs, cattle ranch) sampled over 10 sessions across two years in the southern Andes of Ecuador. Specialization of hummingbird species in the networks was measured by three indices: d' (related to niche partitioning), generality (related to niche width) and PSI (related to pollination services). Specialization indices d', generality and PSI of hummingbird species were influenced by resource availability. All indices indicated that specialization of hummingbirds increased when the availability of resources decreased. Variation in d' was also explained by an interaction between resource availability and bill length; hummingbirds with a long bill switched from being more specialized than other species when resource availability was low to being similarly specialized when availability was high. Overall, our results highlight the importance of ecological and evolutionary factors determining the specialization of species in interaction networks. We demonstrate in particular that ecological gradients in resource availability cause substantial changes in consumers' foraging behavior contingent on their morphology. Changes in pollinator specialization along resource gradients can have impacts on ecosystem functions, such as pollination by animals.

opencc-zeroMay 2016View details →
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Water availability drives above-ground biomass and bird richness in forest restoration plantings to achieve carbon and biodiversity co-benefits

<p>To combat global warming and biodiversity loss we require effective forest restoration that encourages recovery of species diversity and ecosystem function to deliver essential ecosystem services, such as biomass accumulation. Further, understanding how and where to undertake restoration to achieve carbon sequestration and biodiversity conservation would provide an opportunity to finance ecosystem restoration under carbon markets. We surveyed 30 native mixed-species plantings in subtropical forests and woodlands in Australia, and used structural equation modelling to determine vegetation, soil and climate variables most likely driving above-ground biomass accrual and bird richness, and investigate the relationships between plant diversity, above-ground biomass accrual and bird diversity. We focussed on woodland and forest-dependent birds, and functional groups at risk of decline (insectivorous, understorey-nesting, and small-bodied birds). We found that mean moisture availability strongly limits above-ground biomass accrual and bird richness in restoration plantings, indicating potential synergies in choosing sites for carbon and biodiversity purposes. Counter to theory, woody plant richness was a poor direct predictor of above-ground biomass accrual, but was indirectly related via significant, positive effects of stand density. We also found no direct relationship between above-ground biomass accrual and bird richness, likely because of the strong effects of moisture availability on both variables. Instead, moisture availability and patch size strongly and positively influenced the richness of woodland and forest dependent birds. For understorey-nesting birds, however, shrub cover and patch size predicted richness. Stand age or area of native vegetation surrounding the patch did not influence bird richness. Our results suggest that in subtropical biomes, planting larger patches to higher densities, ideally using a diversity of trees and shrubs (characteristics of ecological plantings) in more mesic locations will enhance the provision of carbon and biodiversity co-benefits. Further, ecological plantings will aid the rapid recovery of woodland and forest bird richness, with comparable above-ground biomass accrual to less diverse forestry plantations.</p>

opencc-zeroNov 2019View details →
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Data from: Combined measurements of prey availability explain habitat selection in foraging seabirds

Understanding links between habitat characteristics and foraging efficiency help to predict how environmental change could influence populations of top-predators. This study examines whether measurements of prey (clupeids) availability varied over stratification gradients, and determined if any of those measurements coincided with aggregations of foraging seabirds (common guillemot Uria aalge, Manx shearwater Puffinus puffinus) in the Celtic Sea, UK. The probability of encountering foraging seabirds was highest around fronts between mixed and stratified water. Prey were denser and shallower in mixed water, and encounters with prey most frequent in stratified water. Therefore, no single measurement of increased prey availability coincided with the location of fronts. However, when considered in combination, overall prey availability was highest in these areas. These results show that top-predators may select foraging habitats by trading-off several elements of prey availability. By showing that top-predators select areas where prey are switching between behaviours, these results also identify a mechanism that could explain the wider importance of edge habitats for these taxa. As offshore developments (e.g. marine renewable energy installations) change patterns of stratification, their construction may have consequences on the foraging efficiency of seabirds.

opencc-zeroDec 2017View details →
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Data from: Food availability affects adult survival trajectories depending on early developmental conditions

Food availability modulates survival in interaction with (for example) competition, disease and predators, but to what extent food availability in natural populations affects survival independent of these factors is not well known. We tested the effect of food availability on lifespan and actuarial senescence in a large population of captive zebra finches by increasing the effort required to obtain food, reflecting natural contrasts in food availability. Food availability may not affect all individuals equally and we therefore created heterogeneity in phenotypic quality by raising birds with different numbers of siblings. Low food availability had no effect on lifespan for individuals from benign developmental conditions (raised in small broods), but shortened lifespan for individuals from harsh developmental conditions. The lifespan difference arose through higher baseline mortality rate of individuals from harsh developmental conditions, despite a decrease in the rate of actuarial senescence. We found no evidence for sex-specific environmental sensitivity, but females lived shorter than males due to increased actuarial senescence. Thus, low food availability by itself shortens lifespan, but only in individuals from harsh developmental conditions. Our food availability manipulation resembles dietary restriction as applied to invertebrates, where it extends lifespan in model organisms and we discuss possible reasons for the contrasting results.

opencc-zeroDec 2015View details →
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Data from: Aridity Modulates N Availability in Arid and Semiarid Mediterranean Grasslands

While much is known about the factors that control each component of the terrestrial nitrogen (N) cycle, it is less clear how these factors affect total N availability, the sum of organic and inorganic forms potentially available to microorganisms and plants. This is particularly true for N-poor ecosystems such as drylands, which are highly sensitive to climate change and desertification processes that can lead to the loss of soil nutrients such as N. We evaluated how different climatic, abiotic, plant and nutrient related factors correlate with N availability in semiarid Stipa tenacissima grasslands along a broad aridity gradient from Spain to Tunisia. Aridity had the strongest relationship with N availability, suggesting the importance of abiotic controls on the N cycle in drylands. Aridity appeared to modulate the effects of pH, plant cover and organic C (OC) on N availability. Our results suggest that N transformation rates, which are largely driven by variations in soil moisture, are not the direct drivers of N availability in the studied grasslands. Rather, the strong relationship between aridity and N availability could be driven by indirect effects that operate over long time scales (decades to millennia), including both biotic (e.g. plant cover) and abiotic (e.g. soil OC and pH). If these factors are in fact more important than short-term effects of precipitation on N transformation rates, then we might expect to observe a lagged decrease in N availability in response to increasing aridity. Nevertheless, our results suggest that the increase in aridity predicted with ongoing climate change will reduce N availability in the Mediterranean basin, impacting plant nutrient uptake and net primary production in semiarid grasslands throughout this region.

opencc-zeroDec 2012View details →
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Data from: Effect of insect herbivory on plant community dynamics under contrasting water availability levels

1. Diversity of plant communities is impacted by multiple global change drivers but also by altered biotic interactions with antagonist and mutualist organisms that can potentially affect species coexistence. 2. With a two-year outdoor mesocosm experiment in realistic mesic grassland communities, we explored the role of insect herbivory in impacting plant community dynamics under contrasting levels of water availability simulating altered rainfall regimes. We selected a grasshopper species (Calliptamus italicus) feeding predominantly on forbs while avoiding grasses. 3. High water availability reduced species coexistence, boosting productivity while decreasing individual plant survival. At the community level, herbivores were not able to promote species coexistence but asymmetrically influenced grasses and forbs, reducing forb biomass under high water availability. 4. Herbivores shaped individual plant responses to both abiotic conditions and individual-neighbours' interactions. Herbivores influenced focal plant survival by altering the effect of neighbouring plants, mitigating the negative effect of high neighbour biomass at low water availability and exacerbating it at high level of water availability. 5. Synthesis: Altered rainfall has the capacity to change the relative strength of the plant-plant interactions and also to determine the effects of herbivores on grassland communities. The complexity of the interactions between plants and herbivores and the observed context-dependence indicate the need to incorporate multiple biotic and abiotic drivers to fully understand the mechanisms underlying plant dynamics and species coexistence in a changing world.

opencc-zeroDec 2017View details →
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Data from: Responses of common and rare aliens and natives to nutrient availability and fluctuations

<p>1. Global environmental change not only includes changes in mean environmental conditions but also in temporal environmental fluctuations. Because it is frequently suggested that common species, and particularly invasive alien species, are phenotypically highly plastic, they might benefit more from these fluctuations than rare native and rare alien species. Experimental tests, however, are still lacking.</p> <p>2. Here, we tested whether alien plant species take more advantage of increases in resource levels and fluctuations therein than native species, and whether common species do so more than rare species. Therefore, we grew seven common alien, seven rare alien, nine common native and six rare native herbaceous plants, in one treatment with constantly low nutrient availability and five treatments with high nutrient availability that differed in temporal availability of nutrients (constant, increasing, decreasing, single large pulse, multiple smaller pulses).</p> <p>3. We found that all species produced more biomass and longer roots, and had a lower root mass fraction under high nutrient conditions than under low nutrient conditions, irrespective of their origin and commonness. Among the high nutrient treatments, the temporal pattern of nutrient supply also influenced biomass production, root allocation and root thickness, but the magnitude and/or directions of these responses varied among the groups of species. Particularly, we found that alien plant species, irrespective of whether they are common or rare, produced more biomass, and had a higher root mass fraction when nutrients were supplied as a single pulse in the middle of the growth period instead of supplied at a constant rate, whereas the reverse was true for the native species.</p> <p>4. Synthesis: Our study suggests that species origin does not drive differences in plant biomass production, root morphology and allocation in response to changes in mean environmental nutrient availability. However in our study, alien plant species, in contrast to native plant species, benefited from a large nutrient pulse. This suggests that increased fluctuations in nutrient availability might promote alien plant invasions.</p>

opencc-zeroDec 2016View details →
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Data from: Exotic invasive plants increase productivity, abundance of ammonia-oxidizing bacteria, and nitrogen availability in intermountain grasslands

1. Exotic plant invasion is often associated with dramatic increases in above-ground net primary productivity and soil nitrogen. However, most evidence for these increases comes from correlative studies of single species, leaving open the question of whether invasive plants drive these processes and if they are consistent among invaders. 2. We combined field surveys and measurements within experimental plantings to examine how plant productivity, soil nitrogen, and the abundance of ammonia-oxidizing bacteria (AOB) change in response to invasions by four exotic species. 3. The relationship between plant productivity and soil nitrate differed among native and invasive species, suggesting a fundamental disparity in the effects of natives and invaders on ecosystem processes. In field surveys, dense patches of all invasive species had higher abundances of AOB than native-dominated sites. Three of the four invasive species had higher productivity, soil nitrate concentrations, and rates of potential nitrification as compared to nearby native-dominated communities. In our experimental plantings we found that two invasive species drove increases in soil nitrate and one invader caused increased productivity after a single season. 4. Synthesis:Our results highlight the importance of the N-cycling soil microbial community in how exotic invasive plants alter ecosystem function and show that shifts in function can occur rapidly.

opencc-zeroDec 2015View details →
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Data from: Forest disturbance and seasonal food availability influence a conditional seed dispersal mutualism

The interaction between granivorous scatter-hoarding mammals and plants is a conditional mutualism: scatter-hoarders consume seeds (acting as predators), but the movement of seed by scatter-hoarders may contribute to dispersal (acting as mutualists). Understanding the ecological factors that shape this relationship is highly relevant in anthropogenically disturbed tropical forests where large-bodied frugivores are extirpated. In such forests, large-seeded trees that once depended on these frugivores for dispersal may now only have scatter-hoarders as prospective dispersers. We studied Carapa oreophila (Meliaceae) in an Afromontane forest, to test the hypotheses that the proportion of seeds immediately consumed or hoarded (dispersed) would vary over a disturbance gradient. Temporal replication also afforded exploration of how habitat effects might vary with food availability. Using a Bayesian framework, we demonstrate that seeds were more likely to be hoarded in less disturbed forest, irrespective of temporal variation in food abundance. In contrast, forest disturbance only appeared to increase seed predation in temporal replicates that coincided with sustained food availability. These results highlight the potential variability in the dynamics between plants and scatter-hoarders over fine temporal scales, elucidating possible ecological scenarios where scatter-hoarders might act as mutualists (contributing positively to plant recruitment). Our study also fills important knowledge gaps about the importance of scatter-hoarders as dispersers in tropical forests depleted of large-bodied frugivores, particularly in Africa where scatter-hoarding mutualisms have not been extensively studied.

opencc-zeroDec 2017View details →
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Data from: Resource stoichiometry and availability modulate species richness and biomass of tropical litter macro-invertebrates

1. The high biodiversity and biomass of soil communities is crucial for litter decomposition in terrestrial ecosystems such as tropical forests. However, the leaf litter that these communities consume is of particularly poor quality as indicated by elemental stoichiometry. The impact of resource quantity, quality, and other habitat parameters on species richness and biomass of consumer communities is often studied in isolation, although much can be learned from simultaneously studying both community characteristics. 2. Using a data set of 780 macro-invertebrate consumer species across 32 sites in tropical lowland rainforest and agricultural systems on Sumatra, Indonesia, we investigated the effects of basal resource stoichiometry (C:X ratios of N, P, K, Ca, Mg, Na, S in local leaf litter), litter mass (basal resource quantity and habitat space), plant species richness (surrogate for litter habitat heterogeneity), and soil pH (acidity) on consumer species richness and biomass across different consumer groups (i.e., three feeding guilds and ten selected taxonomic groups). 3. In order to distinguish the most important predictors of consumer species richness and biomass, we applied a standardised model averaging approach investigating the effects of basal resource stoichiometry, litter mass, plant species richness, and soil pH on both consumer community characteristics. This standardised approach enabled us to identify differences and similarities in the magnitude and importance of such effects on consumer species richness and biomass. 4. Across consumer groups, we found litter mass to be the most important predictor of both species richness and biomass. Resource stoichiometry had a more pronounced impact on consumer species richness than on their biomass. As expected, taxonomic groups differed in which resource and habitat parameters (basal resource stoichiometry, litter mass, plant species richness, and pH) were most important for modulating their community characteristics. 5. The importance of litter mass for both species richness and biomass indicates that these tropical consumers strongly depend on habitat space and resource availability. Our study supports previous theoretical work indicating that consumer species richness is jointly influenced by resource availability and the balanced supply of multiple chemical elements in their resources.

opencc-zeroDec 2016View details →
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Data from: Discrete choice modelling of natal dispersal: "choosing" where to breed from a finite set of available areas

1. Classic natal dispersal studies focus mainly on distance travelled. Although distances capture some of the main selective pressures related to dispersal, this approach cannot easily incorporate the properties of the actual destination vs. the available alternatives. Recently, movement ecology studies have addressed questions on movement decisions in relation to availability of resources and/or availability of suitable habitats through the use of discrete choice models (DCMs), a widely used type of models within econometrics, which explains individual choices as a function of the properties of a finite number of alternatives. 2. In this contribution, we show how the dispersal discrete choice model (DDCM) can be used for analysing natal dispersal data in patchy environments given that the natal and the breeding area of the disperser are observed. We test this method using a case study on Great Tits (Parus major) in an archipelago of small woodlots. 3. Our results show that DDCMs are able to capture the results of classic distance-based approaches and simultaneously allow testing hypotheses on how departure and settlement are affected by variables that characterize the disperser, the natal patch and the breeding area, as well as their interactions. 4. DDCMs can be applied to any other species and system that uses some form of discrete breeding location or a certain degree of discretization can be applied.

opencc-zeroDec 2014View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record