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865 results for “Mitochondrial genomes”
Figure 2 from: Shaoli M, Hao Y, Chao L, Yafu Z, Fuming S, Yuchao W (2018) The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by next-generation sequencing and phylogenetic implication (Orthoptera, Meconematinae). ZooKeys 773: 57-67. https://doi.org/10.3897/zookeys.773.24156
Figure 2 Relative synonymous codon usage of X. (X.) fascipes, X. (E.) howardi, X. (H.) maculatus mitochondrial protein-coding genes. Condon families are provided on the x-axis.
Figure 4 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 4 Phylogenetic tree of five cestode orders inferred from maximum likelihood analysis with concatenated nucleotide sequence of all 36 genes (12 PCGs, 2 rRNAs, and 22 tRNAs). Bootstrap (BS)/bayesian posterior probability (BPP) support values are shown above the nodes, only BS < 100 and BPP < 1 are displayed. Scale bar represents the estimated number of substitutions per site.
Figure 2 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 2 a The comparison of nucleotide skewness of the full genomes for the mitogenome of Parabreviscolexniepini and other cestodes b, c Principal component (PC) analysis of the codon usage and amino acid usage in the PCGs of P.niepini and other cestodes. The first PC (PC1) and the second PC (PC2) of the codon usage and amino acid usage accounted for 96.7% and 98.08% of the variability, respectively. d G+T content of complete genomes and their individual elements. The six caryophyllideans are represented by triangles in a-c. Abbreviations: AH: Atractolytocestushuronensis; BO: Breviscolexorientalis; Ksp2: Khawia sp. 2; KSK: Khawiasinensis; Ksp1: Khawia sp. 1; PN: Parabreviscolexniepini.
Figure 1 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 1 Circular representation of the mitochondrial genome of Parabreviscolexniepini. Different colors were used to indicated protein-coding genes (12) (red), tRNAs (22) (yellow), rRNAs (2) (green), and non-coding regions (grey). Tapeworm was stained with iron acid carmine.
Figure 6 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 6 The phylogenetic relationships were established by the 13 PCGs using ML (A) and BI (B) methods. Numbers abutting branches were bootstrap percentages with 1000 replicates (A) and Bayesian posterior probabilities (B). Red pentagram refers to the mitogenome sequences of O.a.aterrimus.
Figure 5 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 5 Secondary structures of 23 tRNAs of O.a.aterrimus mitochondrial genome. Watson-Crick bonds are showed by dashes, GU pairs by filled dots, and AG and UU by open dots.
Figure 2 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 2 Mitochondrial gene arrangement of 12 species of Vespidae. The red fonts indicate the rearrangement of the genes.
Figure 4 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 4 Relative synonymous codon usage (RSCU) in Vespidae. Codon families are displayed along the x-axis.
Figure 1 from: Zhang Q-H, Huang P, Chen B, Li T-J (2018) The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae). ZooKeys 790: 127-144. https://doi.org/10.3897/zookeys.790.25356
Figure 1 The mitochondrial genome of O.a.aterrimus. Arrows indicate the direction of genes. Abbreviations of the gene name are as follows: nad1-4 and nad4L act as nicotinamide adenine dinucleotide hydrogen dehydrogenase subunits 1-6 and 4L; cox1, cox2, and cox3 act as the cytochrome C oxidase subunits; cytb act as cytochrome b; atp8 and atp6 act as adenosine triphosphate synthase subunits 6 and 8; rrnL and rrnS act as large and small rRNA subunits; In addition, CR indicates control region and NCR indicates non-coding region.
Figure 7 from: Niu W, Yu S, Tian P, Xiao J (2018) Complete mitochondrial genome of Echinophyllia aspera (Scleractinia, Lobophylliidae): Mitogenome characterization and phylogenetic positioning. ZooKeys 793: 1-14. https://doi.org/10.3897/zookeys.793.28977
Figure 7 Inferred phylogenetic relationships based on the concatenated nucleotide sequences of 13 mitochondrial protein-coding genes using Bayesian inference (BI) and maximum likelihood (ML). Numbers on branches are Bayesian posterior probabilities and bootstrap percentages.
Figure 2 from: Niu W, Yu S, Tian P, Xiao J (2018) Complete mitochondrial genome of Echinophyllia aspera (Scleractinia, Lobophylliidae): Mitogenome characterization and phylogenetic positioning. ZooKeys 793: 1-14. https://doi.org/10.3897/zookeys.793.28977
Figure 2 The mitochondrial genome of Echinophylliaaspera. Gene order and positions are shown; all the genes are encoded on H-strand. COI, COII, COIII refer to the cytochrome oxidase subunits, Cyt b refers to cytochrome b, ND1-ND6 refer to NADH dehydrogenase components.
Supplementary material 1 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
: Data type: molecular data
Figure 4 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 4 Hypotheses of phylogenetic relationships among subfamilies of the Unionidae form this and other studies. ALopes-Lima et al. (2017a)BBolotov et al. (2017a)CHuang et al. 2013; Burzyński et al. 2017; Huang et al. 2018; Wu et al. 2016, 2017bD This study.
Figure 2 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 2 The gene arrangement of the F-type mitochondrial genome of Acuticostachinensis, Schistodesmuslampreyanus, Cuneopsisheudei, and Cuneopsiscapitatus.
Figure 3 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 3 Phylogenetic trees of freshwater mussels obtained by Bayesian Inference (BI) and Maximum Likelihood (ML) analyses of 12 mitochondrial protein-coding gene sequences (except atp8) and two rRNA combined dataset. Support values above the branches are posterior probabilities and bootstrap support. (*) indicates 100 percent bootstrap support and posterior probabilities. Red font indicates Chinese species.
Figure 1 from: Wu R-W, Liu X-J, Wang S, Roe KJ, Ouyang S, Wu X-P (2019) Analysis of mitochondrial genomes resolves the phylogenetic position of Chinese freshwater mussels (Bivalvia, Unionidae). ZooKeys 812: 23-46. https://doi.org/10.3897/zookeys.812.29908
Figure 1 Shells of the unionids species in this study. AAcuticostachinensis (Lea, 1868) BSchistodesmuslampreyanus (Baird & Adams, 1867) CCuneopsisheudei (Heude, 1874) DCuneopsiscapitatus (Heude, 1874). Scale bar: 4 cm. Photogaphs R-W Wu.
FIGURE 1 in The complete mitochondrial genome of the jumping grasshopper Sinopodisma pieli (Orthoptera: Acrididae) and the phylogenetic analysis of Melanoplinae
FIGURE 1. Gene map of the S. pieli mitogenome.
FIGURE 5 in A new species of the genus Hilethera Uvarov, 1923 (Orthoptera: Acrididae: Oedipodinae) from China and its complete mitochondrial genome
FIGURE 5. Evolution rates of each protein-coding (PCG) in the oedipodine mitogenomes.
FIGURE 2 in A new species of the genus Hilethera Uvarov, 1923 (Orthoptera: Acrididae: Oedipodinae) from China and its complete mitochondrial genome
FIGURE 2. Map of the mitochondrial genome of Hilethera xinjiangensis sp. nov.
FIGURE 3 in A new species of the genus Hilethera Uvarov, 1923 (Orthoptera: Acrididae: Oedipodinae) from China and its complete mitochondrial genome
FIGURE 3. Comparison of AT-skew and GC-skews in oedipodine species.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.