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2,620 results for “Molecular Phylogeny”
FIGURE 1 in Molecular phylogeny of the weevil genus Dichromacalles Stüben (Curculionidae: Cryptorhynchinae) and description of a new species
FIGURE 1. Phylogenetic hypothesis for the western Palaeartic genera of the subfamily Cryptorhynchinae Schoenherr, 1825, based on type species (gray shaded) and others. Bayesian 50% majority rule consensus tree built from mitochondrial COI+16S and nuclear 28S gene sequences. Numbers next to nodes indicate posterior probabilities in percent. Name of each species is followed by internal extraction number in brackets (in three cases complemented sequences derived from two individuals with different extraction numbers). See Table 1 for collecting data. Photos on the right side show some of the species listed in the tree.
FIGURE 37 in Molecular phylogeny of the weevil genus Dichromacalles Stüben (Curculionidae: Cryptorhynchinae) and description of a new species
FIGURE 37. Comparison of Bayesian 50% majority rule consensus trees built for Dichromacalles from COI dataset (left), COI+16S dataset (middle) and COI+16S+28S dataset (right; same as in Fig. 2). In all trees Dichromacalles lentisci is grouped within an own clade, suggesting it to be a good species, distinct from others. Using only COI data D. lentisci is obtained as the sister taxon of the clade D. albopictus + D. tuberculatus + D. querilhaci. Adding the 16S dataset leads to D. lentisci being placed in a trichotomy with D. albopictus + D. tuberculatus + D. querilhaci and D. rolletii + D. boroveci + D. creticus. By using three genes (COI+16S+28S dataset) we receive a tree where D. lentisci is positioned as the sister species to D. rolletii + D. boroveci + D. creticus. The Bayesian posterior probability values increased in the parent clade of D. lentisci from 91.4% (COI dataset, 658 nt) to 93.1% (COI+16S+28S dataset, 1528 nt).
FIGURE 2 in Molecular phylogeny of the weevil genus Dichromacalles Stüben (Curculionidae: Cryptorhynchinae) and description of a new species
FIGURE 2. Phylogenetic hypothesis for the Palaeartic species of the genus Dichromacalles Stüben, 1998. The clade of the new species D. algecirasensis is gray shaded. Bayesian 50% majority rule consensus tree built from mitochondrial COI+16S and nuclear 28S gene sequences. Numbers next to nodes indicate posterior probabilities in percent, country abbreviation and internal extraction numbers are given in brackets (CI: Canary Islands, E: Continental Spain, F: France, GR: Greece, I: Italy, Mo: Morocco, P: Portugal). See Table 2 for collecting data. Fotos on the right side show most of the species listed in the tree together with their host plants.
FIGURE 1 in A molecular phylogeny recovers Strabomantis aramunha Cassimiro, Verdade and Rodrigues, 2008 and Haddadus binotatus (Spix, 1824) (Anura: Terrarana) as sister taxa
FIGURE 1. Bayesian inference (BI) topology of combined molecular dataset (cyt b, 16 S, 12S, RAG–1, and rhodopsin genes) showing the relationships of Haddadus aramunha within Terrarana. Numbers above nodes are posterior probability values (ns <95%), maximum likelihood (ML) bootstrap support (ns <70%), and maximum parsimony (MP) bootstrap support (ns <70%), displayed as (BI/ML/MP); ns = no high support; * = 100%; nc = no such clade by this criterion.
FIGURE 2 in A molecular phylogeny recovers Strabomantis aramunha Cassimiro, Verdade and Rodrigues, 2008 and Haddadus binotatus (Spix, 1824) (Anura: Terrarana) as sister taxa
FIGURE 2. Bayesian inference (BI) topology of mitochondrial molecular dataset (12S, t-RNAval, 16S), showing the relationships of Haddadus aramunha within a broad sample of Terraranan species. Numbers above nodes are posterior probability values (ns <95%), maximum likelihood (ML) bootstrap support (ns <70%), and maximum parsimony (MP) bootstrap support (ns <70%), displayed as (BI/ML/MP); ns = no high support; * = 100%; nc = no such clade by this criterion. The figures of specimens are not to scale.
FIGURE 11 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 11. Representative advertisement calls of Cacosternum platys Kenilworth (left), C. plimptoni Nairobi (center) and C. striatum Singisi (right).
FIGURE 10 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 10. Representative advertisement calls of Cacosternum nanogularum sp. nov. Kranskop (left), C. nanum Beacon Bay (middle) and C. parvum Maclear (right).
FIGURE 8 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 8. Representative advertisement calls of Cacosternum leleupi Lusinga (left), C. namaquense Nuwerus (middle) and C. australis sp. nov. Vrolijkheid (right).
FIGURE 3 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 3. Representatives of species of African Dainty Frogs, Cacosternum. All localities in South Africa unless indicated otherwise. A–C. aggestum sp. nov. Holotype MHNG 2690.25 Klipheuwel; B–C. australis sp. nov. MHNG 2699.34, Robertson; C–C. boettgeri MHNG 2740.23 Matatiele; D–C. capense MHNG 2690.23 Klipheuwel; E–C. karooicum MHNG 2740.67 Vrolijkheid; F–C. kinangopensis holotype NMK A/4372 Murugaru, Kenya; G–C. leleupi Lusinga, Democraic Republic of Congo; H–C. namaquense MHNG 2699.45 Arakoep; I–C. nanogularum sp. nov. holotype MHNG 2750.77 Nkandla; J–C. nanum MHNG 2740.86 Hogsback; K–C. parvum MHNG 2741.2, Mariepskop; L–C. platys MHNG 2709.03 Noordhoek; M–C. plimptoni AC2535 MHNG 2661.23 Serengeti National Park, Tanzania; N–C. rhythmum sp. nov. MHNG 2741.15, Qudeni; O–C. striatum MHNG 2741.20 Mpur Forest.
FIGURE 7 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 7. Representative advertisement calls of Cacosternum karooicum Oukloof (left) and C. kinangopensis Murungaru (right).
FIGURE 6 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 6. Localities of the molecular samples used in this study. Cacosternum aggestum sp. nov. pale blue circles; C. australis sp. nov. - red squares; C. boettgeri—dark blue circles; C. kinangopensis—yellow square; C. leleupi—green triangle; C. plimptoni—white circle; C. rhythmum—orange triangles.
FIGURE 2 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 2. Network of most likely haplotypes of the tyr gene. Black circles represent hypothetical intermediate haplotypes. Circle size is proportional to number of individuals.
FIGURE 4 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 4. Ventral views of breeding Cacosternum males. All localities in South Africa unless indicated otherwise. A–C. aggestum sp. nov. MHNG 2690.25, Klipheuwel. B–C. australis sp. nov., MHNG 2699.42 Pearly Beach C–C. boettgeri MHNG 2740.31, The Vale Farm. D–C. capense MHNG 2690.23 Klipheuwel. E–C. karooicum MHNG 2740.67, Vrolijkheid Nature Reserve. F–C. kinangopensis NMK A/4372, Murungaru, Kenya. G–C. leleupi MHNG 2740.69 Lusinga, Democratic Republic of Congo. H–C. namaquense, MHNG 2699.44 Arakoep. I–C. nanogularum sp. nov. MHNG 2740.78, Nkandla. J–C. nanum MHNG 2740.87 Hogsback. K–C. parvum MHNG 2740.66 Maclear. L–C. platys MHNG 2699.37 Kenilworth. M–C. plimptoni MNHG 2661.21, Serengeti National Park, Tanzania. N–C. rhythmum sp. nov., MHNG 2741.12 Harrismith. O–C. striatum MHNG 2741.21 Mpur Forest.
FIGURE 5 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 5. Representative advertisement calls of C. aggestum sp. nov. Klipheuwel (left), C. boettgeri Harrismith (middle) and C. capense Klipheuwel (right).
FIGURE 1 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 1. Phylogeny of Cacosternum species, based on 16S. Branch support is indicated as Posterior Probability/Maximum Likelihood Bootstrap. Terminal triangles represent collapsed clades, to simplify the tree. Numerals in parentheses represent sample size/number of localities.
FIGURE 9 in A molecular phylogeny of African Dainty Frogs, with the description of four new species (Anura: Pyxicephalidae: Cacosternum)
FIGURE 9. Localities of the molecular samples used in this study. Cacosternum capense pale pink circle; C. namaquense pale blue square; C. nanum dark green circles; C. platys yellow triangles; C. karooicum yellow circle; C. nanogularum orange squares; C. parvum red triangles; C. striatum white circle.
FIGURE 8 in Telopathes magna gen. nov., spec. nov. (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) from deep waters off Atlantic Canada and the first molecular phylogeny of the deep-sea family Schizopathidae
FIGURE 8. Excerpt of a neighbour-joining tree from Jordan (2008), constructed using Kimura calculated distances obtained from the rDNA ITS region of the nuclear genome. Telopathes magna groups sister to the schizopathid Bathypathes sp. Specimens sequenced in that study are highlighted. Outgroups: the corallimorpharian Corynactis californica and zoanthid Palythoa variabilis.
FIGURE 6 in Telopathes magna gen. nov., spec. nov. (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) from deep waters off Atlantic Canada and the first molecular phylogeny of the deep-sea family Schizopathidae
FIGURE 6. Photographs of paratype colonies. (A) in situ photograph of paratype from Balanus Seamount; same growth form as holotype. (B) in situ photograph of paratype from Caloosahatchee Seamount, Milne-Edwards Peak; juvenile colony, with secondary branch indicated (arrow). (C) Fragment of Caloosahatchee paratype showing anterolateral pinnule arrangement. Scale 1 cm. (D) in situ photograph of paratype from Rehoboth Seamount; large colony with extensive branching.
FIGURE 5 in Telopathes magna gen. nov., spec. nov. (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) from deep waters off Atlantic Canada and the first molecular phylogeny of the deep-sea family Schizopathidae
FIGURE 5. Spines on pinnules of holotype. (A) Longitudinal rows of spines, indicating section of a row lacking spines (arrow); (B–C) Close-up of regular spines and paired spines, respectively. Scale: A, 500 µm; B–C, 100 µm.
FIGURE 7 in Telopathes magna gen. nov., spec. nov. (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) from deep waters off Atlantic Canada and the first molecular phylogeny of the deep-sea family Schizopathidae
FIGURE 7. Spines on branches and pinnules of paratypes. (A) Paratype from Balanus Seamount with spine morphology identical to the holotype. (B) Paratype from Rehoboth Seamount showing bent tip (arrow). (C) Paratype from Caloosahatchee Seamount, Milne-Edwards Peak showing larger polypar spines. Scale 100 µm.
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International Brain Laboratory public data
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OpenNeuro
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