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Figure 9 from: Davolos D, De Matthaeis E, Latella L, Vonk R (2017) Cryptorchestia ruffoi sp. n. from the island of Rhodes (Greece), revealed by morphological and phylogenetic analysis (Crustacea, Amphipoda, Talitridae). ZooKeys 652: 37-54. https://doi.org/10.3897/zookeys.652.11252
Figure 9 - A Cryptorchestia ruffoi sp. n., gnathopod 2 male, 11.1 mm total body length B Cryptorchestia garbinii from Lake Garda, gnathopod 2 male, 18 mm total body length C Cryptorchestia cavimana from Cyprus, gnathopod 2 male, 14. 8 mm total body length, scale bar 1 mm. D Cryptorchestia ruffoi sp. n. pereopod 7 male E Cryptorchestia garbinii from Lake Garda, pereopod 7 male F Cryptorchestia cavimana from Cyprus, gnathopod 2 male, scale bar 1 mm.
Figure 5 from: Davolos D, De Matthaeis E, Latella L, Vonk R (2017) Cryptorchestia ruffoi sp. n. from the island of Rhodes (Greece), revealed by morphological and phylogenetic analysis (Crustacea, Amphipoda, Talitridae). ZooKeys 652: 37-54. https://doi.org/10.3897/zookeys.652.11252
Figure 5 - Cryptorchestia ruffoi sp. n., paratype male 10.4 mm (RMNH) A gnathopod 2 B pereopod 4 C pereopod 3 D pereopod 5.
Figure 8 from: Davolos D, De Matthaeis E, Latella L, Vonk R (2017) Cryptorchestia ruffoi sp. n. from the island of Rhodes (Greece), revealed by morphological and phylogenetic analysis (Crustacea, Amphipoda, Talitridae). ZooKeys 652: 37-54. https://doi.org/10.3897/zookeys.652.11252
Figure 8 - Cryptorchestia ruffoi sp. n., paratype female 10.8 mm (RMNH) A gnathopod 1 B gnathopod 2.
Figure 3 from: Chadin I, Dalke I, Zakhozhiy I, Malyshev R, Madi E, Kuzivanova O, Kirillov D, Elsakov V (2017) Distribution of the invasive plant species Heracleum sosnowskyi Manden. in the Komi Republic (Russia). PhytoKeys 77: 71-80. https://doi.org/10.3897/phytokeys.77.11186
Figure 3 - The prediction map of Heracleum sosnowskyi habitats prepared with the species distribution model based on bioclaimatic predictors. The borders of Plot 2 within which the model prediction was made. The colour scale shows the probability Heracleum sosnowskyi presence.
Figure 2 from: Chadin I, Dalke I, Zakhozhiy I, Malyshev R, Madi E, Kuzivanova O, Kirillov D, Elsakov V (2017) Distribution of the invasive plant species Heracleum sosnowskyi Manden. in the Komi Republic (Russia). PhytoKeys 77: 71-80. https://doi.org/10.3897/phytokeys.77.11186
Figure 2 - The prediction map of Heracleum sosnowskyi habitats prepared with the species distribution model based on vegetation cover map, nearest road proximity map, proximity map to the borders of agricultural areas. The colour scale shows the probability Heracleum sosnowskyi presence.
Figure 1 from: Chadin I, Dalke I, Zakhozhiy I, Malyshev R, Madi E, Kuzivanova O, Kirillov D, Elsakov V (2017) Distribution of the invasive plant species Heracleum sosnowskyi Manden. in the Komi Republic (Russia). PhytoKeys 77: 71-80. https://doi.org/10.3897/phytokeys.77.11186
Figure 1 - Study area. Red points indicate occurrences of Heracleum sosnowskyi described in the data paper.
Figure 1 from: Wu Y-D, Zhang H-R, Zhang X-C (2017) Selaginella guihaia (Selaginellaceae): A new spikemoss species from southern China and northern Vietnam around the Gulf of Tonkin. PhytoKeys 80: 41-52. https://doi.org/10.3897/phytokeys.80.11126
Figure 1 - The 50% majority rule consensus tree derived from maximum likelihood showing the position of Selaginella guihaia. Support values (MPBS, MLBS > 50%, BIPP > 0.8) are shown above the main braches; the dash (–) indicates BS < 50%. The new species is shown in bold.
Figure 4 from: Wu Y-D, Zhang H-R, Zhang X-C (2017) Selaginella guihaia (Selaginellaceae): A new spikemoss species from southern China and northern Vietnam around the Gulf of Tonkin. PhytoKeys 80: 41-52. https://doi.org/10.3897/phytokeys.80.11126
Figure 4 - Selaginella guihaia X.C.Zhang, sp. nov. A Dorsal view of branch B Ventral view of branch. C Strobilus D Rhizophore E Habit.
Figure 2 from: Wu Y-D, Zhang H-R, Zhang X-C (2017) Selaginella guihaia (Selaginellaceae): A new spikemoss species from southern China and northern Vietnam around the Gulf of Tonkin. PhytoKeys 80: 41-52. https://doi.org/10.3897/phytokeys.80.11126
Figure 2 - Selaginella guihaia X.C.Zhang A Habit B Dorsal leaf C Ventral leaf D Part of main stem showing ventral leaves, dorsal leaves, and strobili E Part of main stem showing ventral leaves, axillary leaves, and strobili F Megasporophyll G Microsporophyll (Drawn by C.Z. Ji from Beijing Youth Expedition 0980, PE).
Figure 1 from: Vissers J, Bosch FV, Bogaerts A, Cocquyt C, Degreef J, Diagre D, de Haan M, De Smedt S, Engledow H, Ertz D, Fabri R, Godefroid S, Hanquart N, Mergen P, Ronse A, Sosef M, Stévart T, Stoffelen P, Vanderhoeven S, Groom Q (2017) Scientific user requirements for a herbarium data portal. PhytoKeys 78: 37-57. https://doi.org/10.3897/phytokeys.78.10936
Figure 1 - Stakeholders interacting with the Botanic Garden Meise and potentially using its data portal. The stakeholders prefixed by the words 'internal' refer to those that work at the Botanic Garden, whereas those referred to as 'external' refer to researchers in other institutions.
Figure 3 from: Vissers J, Bosch FV, Bogaerts A, Cocquyt C, Degreef J, Diagre D, de Haan M, De Smedt S, Engledow H, Ertz D, Fabri R, Godefroid S, Hanquart N, Mergen P, Ronse A, Sosef M, Stévart T, Stoffelen P, Vanderhoeven S, Groom Q (2017) Scientific user requirements for a herbarium data portal. PhytoKeys 78: 37-57. https://doi.org/10.3897/phytokeys.78.10936
Figure 3 - A summary of the data elements mentioned by the different researcher types, showing which data elements researchers had in common and which were unique. This does not mean that any particular data element is not of interest to another group, only that it did not arise in the series of interviews. Details of these data elements can be found in the supplementary information. The full list of common data elements is listed in Table 2.
Figure 2 from: Vissers J, Bosch FV, Bogaerts A, Cocquyt C, Degreef J, Diagre D, de Haan M, De Smedt S, Engledow H, Ertz D, Fabri R, Godefroid S, Hanquart N, Mergen P, Ronse A, Sosef M, Stévart T, Stoffelen P, Vanderhoeven S, Groom Q (2017) Scientific user requirements for a herbarium data portal. PhytoKeys 78: 37-57. https://doi.org/10.3897/phytokeys.78.10936
Figure 2 - A user experience researcher using affinity diagramming to cluster user requirements from the results of the interviews.
Figure 8 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 8 - The eastern CCZ, illustrating the cruise track of the RRS James Cook MIDAS JC-120 cruise to sample APEI-6 (green box) and a short sampling station in the northern sector of UK-1 (yellow box). Image source: Daniel Jones, National Oceanography Centre, UK.
Figure 7 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 7 - The GSR-Belgium polymetallic-nodule exploration claim areas in the eastern CCZ, illustrating the three areas in which survey work has concentrated, and the sampling stations in which molecular data were obtained from GSR cruise in 2015 and the JPI Oceans SO-239 cruise in 2015. Image source: Ann Vanreusel, University of Ghent.
Figure 4 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 4 - Composition of participants in the London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone, based on taxon expertise (only estimated in 23 participants), professional status, representing nation and gender (from 32 participants).
Figure 3 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 3 - Recent publications on the Clarion-Clipperton Zone are making imagery and genetic data available in public databases that will allow future workers access to these data and the voucher materials, for regional-level syntheses and further DNA sequencing if needed. Examples are recent taxonomic data papers on the Echinodermata (Glover et al. 2016b) (image left) and Cnidaria (Dahlgren et al. 2016) (image top right). Data associated with these papers is automatically uploaded to the Global Biodiversity Information Facility (GBIF, bottom right). See Workshop Recommendations.
Figure 6 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 6 - Outline of the JPI Oceans 'SO-239' research cruise aboard the R/V Sonne 10 March – 30 April 2015 to the eastern CCZ (Image from Short Cruise Report: Martinez, 2015).
Figure 5 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 5 - The BGR-Germany polymetallic nodule exploration claim area in the eastern CCZ, illustrating the two areas in which survey work has concentrated in recent years - the proposed preservation reference area (PRA) and impact reference area (IRA). Image source: Federal Institute for Geosciences and Natural Resources (BGR, Germany) and Pedro Martinez, Senckenberg Institute (Rühlemann et al. 2011).
Figure 9 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 9 - The DNA taxonomy field pipeline for the Managing Impacts of Deep Sea Resource Exploitation (MIDAS) cruise aboard RRS James Cook (JC120). Image source: Sergi Taboada, Natural History Museum, UK.
Figure 2 from: Glover A, Dahlgren T, Taboada S, Paterson G, Wiklund H, Waeschenbach A, Cobley A, Martínez P, Kaiser S, Schnurr S, Khodami S, Raschka U, Kersken D, Stuckas H, Menot L, Bonifacio P, Vanreusel A, Macheriotou L, Cunha M, Hilário A, Rodrigues C, Colaço A, Ribeiro P, Błażewicz M, Gooday A, Jones D, Billett D, Goineau A, Amon D, Smith C, Patel T, McQuaid K, Spickermann R, Brager S (2016) The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone. Research Ideas and Outcomes 2: e10528. https://doi.org/10.3897/rio.2.e10528
Figure 2 - There is an almost complete absence of published, databased benthic species records from the Clarion-Clipperton Zone (CCZ), despite over 30 years of intensive oceanographic and geological research in the area. Here illustrated as an example are the current species records for a 300,000 km2 (5°) box centred on the North Sea and Eastern Channel in Europe, where the Ocean Biogeographic Information System (OBIS 2016) provides 182,939 records of polychaetes, a common benthic animal in all oceans. By contrast, the same size box centered on the eastern CCZ provides just 4 polychaete records, none of which are benthic.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.