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975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Spatiotemporal insight into early pregnancy governed by immune-featured stromal cells [Spatial Transcriptomics]
GEO Series GSE250503. Mus musculus. 7 samples. Type: Other.
Single nuclear RNA sequencing and 10X spatial transcriptomic profiling of murine tumors initiated by transplantation of engineered prostate organoids [visium]
GEO Series GSE246762. Mus musculus. 8 samples. Type: Other.
Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics [Nova-ST]
GEO Series GSE256318. Mus musculus. 7 samples. Type: Other.
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics
GEO Series GSE141590. Drosophila melanogaster. 429 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Photo-sensitive oligonucleotides combined with topologically imposed light gradients enable spatially-resolved single-cell transcriptomics and epigenomics
GEO Series GSE237524. Homo sapiens. 56 samples. Type: Other.
A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor
GEO Series GSE228056. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
In-Depth Patient-specific Analysis of Tumor Heterogeneity in Melanoma Brain Metastasis: Insights from Spatial Transcriptomics and Multi-Region Bulk Sequencing
GEO Series GSE275731. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomic analysis of liver-innervating cholinergic neurons
GEO Series GSE255552. Mus musculus. 2 samples. Type: Other.
Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium]
GEO Series GSE250346. Homo sapiens. 45 samples. Type: Other.
Spatial transcriptomics reveals functional compartmentalization of mucinous colorectal adenocarcinoma
GEO Series GSE236697. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling [human kidney]
GEO Series GSE190088. Homo sapiens. 273 samples. Type: Other.
A temporal cortex cell atlas highlights gene expression dynamics during human brain maturation [Spatial Transcriptomics]
GEO Series GSE280570. Homo sapiens. 4 samples. Type: Other.
Spatial transcriptomics reveal lineage complexity of gastric incomplete intestinal metaplasia and its association with gastric cancers [scRNA-Seq]
GEO Series GSE295401. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics of pulmonary pleomorphic carcinoma
GEO Series GSE289483. Homo sapiens. 125 samples. Type: Other.
High-resolution spatial transcriptomics of myocarditic heart from reovirus-infected neonatal mice
GEO Series GSE211096. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [Xenium]
GEO Series GSE264334. Homo sapiens. 1 samples. Type: Other.
Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma
GEO Series GSE272833. Homo sapiens. 4 samples. Type: Other.
JAK-STAT signaling maintains homeostasis in T cells and macrophages (spatial transcriptomics)
GEO Series GSE227168. Mus musculus. 4 samples. Type: Other.
Nrf1 promotes heart regeneration and repair by regulating proteostasis and redox balance [Spatial transcriptome]
GEO Series GSE163629. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Crnic Institute Human Trisome Project - Trisomy 21 Model Atlas: Spatial Transcriptomics of 9-month old mouse brain tissue
GEO Series GSE272845. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.