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1,297
datasets available to search
ShareScore release 0.9.0
Dataset results
1,297 results for “differential analysis”
Quantitative analysis of miRNA changes in bone marrow stem cells under neural differentiation
GEO Series GSE43621. Mus musculus. 3 samples. Type: Non-coding RNA profiling by array.
Epigenetic analysis reveals the repressive function of MyoD during myogenic differentiation
GEO Series GSE63716. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide analysis of differential gene expression in MDA-MB-231 cells after GRMI silencing
GEO Series GSE106100. Homo sapiens. 6 samples. Type: Expression profiling by array.
Differential gene expression analysis by assessing transcriptome-wide expression variation between tissue specimen of prostate cancer (PCa) and benign prostate hyperplasia (BPH)
GEO Series GSE134073. Homo sapiens. 64 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq analysis identifies differentially expressed genes regulated by LPS exposure on HNEpC cells
GEO Series GSE241554. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Quant-seq analysis of differential polyadenylation site usages in caused by different Pol II mutants with slow elongation rates in Flp-In-293 cells and dual inhibition of CDK12 and CDK13 by THZ531 HE
GEO Series GSE141375. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
Data from: De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech
Despite the ecological and economic importance of European beech (Fagus sylvatica L.) genomic resources of this species are still limited. This hampers an understanding of the molecular basis of adaptation to stress. Since beech will most likely be threatened by the consequences of climate change, an understanding of adaptive processes to climate change-related drought stress is of major importance. Here, we used RNA-seq to provide the first drought stress-related transcriptome of beech. In a drought stress trial with beech saplings, 50 samples were taken for RNA extraction at five points in time during a soil desiccation experiment. De novo transcriptome assembly and analysis of differential gene expression revealed 44,335 contigs, and 662 differentially expressed genes between the stress and normally watered control group. Gene expression was specific to the different time points, and only five genes were significantly differentially expressed between the stress and control group on all five sampling days. GO term enrichment showed that mostly genes involved in lipid- and homeostasis-related processes were upregulated, whereas genes involved in oxidative stress response were downregulated in the stressed seedlings. This study gives first insights into the genomic drought stress response of European beech, and provides new genetic resources for adaptation research in this species.
Data from: Differential Expression Analysis for Pathways
Life science technologies generate a deluge of data that hold the keys to unlocking the secrets of important biological functions and disease mechanisms. We present DEAP, Differential Expression Analysis for Pathways, which capitalizes on information about biological pathways to identify important regulatory patterns from differential expression data. DEAP makes significant improvements over existing approaches by including information about pathway structure and discovering the most differentially expressed portion of the pathway. On simulated data, DEAP significantly outperformed traditional methods: with high differential expression, DEAP increased power by two orders of magnitude; with very low differential expression, DEAP doubled the power. DEAP performance was illustrated on two different gene and protein expression studies. DEAP discovered fourteen important pathways related to chronic obstructive pulmonary disease and interferon treatment that existing approaches omitted. On the interferon study, DEAP guided focus towards a four protein path within the 26 protein Notch signalling pathway.
Results of differential expression analysis for the manuscript "N-of-one differential gene expression without control samples using a deep generative model"
<p>Output files for the differential gene expression analysis in the manuscript "N-of-one differential gene expression without control samples using a deep generative model". The zip file contains three folders with the results for DESeq2 and the DGD (named NB-GMM in the folders).</p><p>- The folder False_positives_Fig4B contains the results presented in figure 4B of the manuscript. The file False_positive_single_vs_all.csv contains the results for the one-vs-all experiments. The file False_positive_5_vs_all.csv contains the results for the 5-vs-all experiments.</p><p>- The folder enrichment_plots contains the results presented in figure 4C of the manuscript. Each subfolder (e.g. Basal, HER2E, LumA, LumB) contain the differential expression analysis results for each breast cancer subtype.</p><p>- The folder fig5 contains the results presented in figure 5 of the manuscript. The results for each cancer are presented in a folder.</p>
Differentiation of Upper and Lower Respiratory Tract Infections Using Automated Lung Sound Analysis With LungPass Device
ClinicalTrials.gov study NCT05175612. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Differential Expression and Analysis of Peripheral Plasma Exosome miRNA in Patients With Myocardial Infarction
ClinicalTrials.gov study NCT04127591. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Differentiation of Asthma/COPD Exacerbation and Stable State Using Automated Lung Sound Analysis With LungPass Device
ClinicalTrials.gov study NCT05145894. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Machine-learning Algorithm to Differentiate Intraoperative Ketamine Dosing Based on Electroencephalographic Density Spectrum Array Analysis
ClinicalTrials.gov study NCT05256264. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Differential Diagnosis of Pulmonary Hypertension With Automated Image Analysis
ClinicalTrials.gov study NCT04329312. IPD Sharing: NO. Countries: 1. Publications: 0.
Molecular Variants Associated With Schizophrenia: Differential Analysis of Monozygotic Twins With Variable Phenotypic 22q11
ClinicalTrials.gov study NCT04141540. IPD Sharing: NO. Countries: 1. Publications: 0.
Analysis of the Dentoskeletal Effects of the Expander With Differential Opening
ClinicalTrials.gov study NCT02810353. IPD Sharing: NO. Countries: 1. Publications: 0.
The Use of International Ovarian Tumor Analysis and Assessment of Adnexal Neoplasia in Differentiating Malignant and Benign Adnexal Masses
ClinicalTrials.gov study NCT03442881. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Differential Diagnosis Between Parkinson's Disease and Multiple System Atrophy Using Digital Speech Analysis
ClinicalTrials.gov study NCT03577483. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Analysis of the Modulation of Serum Hepcidin Level in Response to Iron Oral Intake: Potential Interest for the Differential Diagnosis Between Ferroportin Disease and Dysmetabolic Hepatosiderosis.
ClinicalTrials.gov study NCT01949467. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Analysis of Differential Proteins and Maternal Influencing Factors of Septic Shock in Neonates
ClinicalTrials.gov study NCT06206590. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.