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865 results for “Mitochondrial genomes”
Supplementary material 1 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
: Data type: phylogenetic data
Supplementary material 2 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
: Data type: molecular data
Figure 6 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 6 Phylogenetic tree of the eleven sequenced stoneflies. Bayesian inference and Maximum Likelihood analysis inferred from PCGs, PCGR, PCG12, and PCG12R supported the same topological structure. Values at nodes are Bayesian posterior probabilities (up) and ML bootstrap values (down) using the PCGs, PCGR, PCG12, and PCG12R datasets. The tree was rooted with two outgroups (P.princeps and S.spinicercia).
Figure 4 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 4 Predicted secondary structure of the srRNA in M.tritaenia. Key: red circle, nucleotide conserved in three nemourid mitogenomes; green circle, nucleotide not conserved. Roman numerals represent the conserved domain structures. Dashes (−) indicate Watson–Crick base pairing, and dots (·) indicate G–U base pairing I–VI indicate six domains in the secondary structure of srRNA.
Figure 3 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 3 Predicted secondary structure of the lrRNA in M.tritaenia. Key: red circle, nucleotide conserved in three nemourid mitogenomes; green circle, nucleotide not conserved. Roman numerals represent the conserved domain structures. Dashes (−) indicate Watson-Crick base pairing, and dots (·) indicate G–U base pairing I–VI indicate six domains in the secondary structure of lrRNA.
Figure 5 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 5 A+T-rich region of two nemourid mitogenomes A structure elements found in the A+T-rich region of two nemourid mitogenomes. TR is the abbreviation of tandem repeat units B putative stem-loop structures found in the A+T-rich region of M.metafiligera (MM indicate M.metafiligera) C putative stem-loop structures found in the A+T-rich region of M.tritaenia (MT indicate M.tritaenia).
Figure 2 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 2 Secondary structure of tRNA families in nemourid mitogenomes. The nucleotide substitution pattern for each tRNA family is modeled using as reference the structure determined for M.tritaenia. Red arrows correspond to insertions. Inferred Watson-Crick bonds are illustrated by lines, whereas GU bonds are illustrated by dots.
Figure 1 from: Cao J-J, Wang Y, Huang Y-R, Li W-H (2019) Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea. ZooKeys 835: 43-63. https://doi.org/10.3897/zookeys.835.32470
Figure 1 Map of the mitogenomes of M.metafiligera and M.tritaenia. Genes shown on the inside of the map are transcribed in a clockwise direction, whereas those on the outside of the map are transcribed counterclockwise. Different gene types are shown as filled boxes in different colors. Numbers show the sizes of intergenic spacers (positive values) and overlapping region between genes (negative values).
Supplementary material 2 from: Song R, Zhang D, Gao J-W, Cheng X-F, Xie M, Li H, Wu Y-A (2019) Characterization of the complete mitochondrial genome of Brentisentis yangtzensis Yu & Wu, 1989 (Acanthocephala, Illiosentidae). ZooKeys 861: 1-14. https://doi.org/10.3897/zookeys.861.34809
: Data type: species data
Figure 2 from: Song R, Zhang D, Gao J-W, Cheng X-F, Xie M, Li H, Wu Y-A (2019) Characterization of the complete mitochondrial genome of Brentisentis yangtzensis Yu & Wu, 1989 (Acanthocephala, Illiosentidae). ZooKeys 861: 1-14. https://doi.org/10.3897/zookeys.861.34809
Figure 2 Phylogenetic tree of acanthocephalans inferred from maximum likelihood analysis with concatenated nucleotide sequence of all 36 genes (12 PCGs, 2 rRNAs, and 22 tRNAs). Bootstrap (BS)/Bayesian posterior probability (BPP) support values are shown above the nodes, only BS < 100 and BPP < 1 are displayed.
Supplementary material 1 from: Song R, Zhang D, Gao J-W, Cheng X-F, Xie M, Li H, Wu Y-A (2019) Characterization of the complete mitochondrial genome of Brentisentis yangtzensis Yu & Wu, 1989 (Acanthocephala, Illiosentidae). ZooKeys 861: 1-14. https://doi.org/10.3897/zookeys.861.34809
: Data type: molecular data
Supplementary material 4 from: Song R, Zhang D, Gao J-W, Cheng X-F, Xie M, Li H, Wu Y-A (2019) Characterization of the complete mitochondrial genome of Brentisentis yangtzensis Yu & Wu, 1989 (Acanthocephala, Illiosentidae). ZooKeys 861: 1-14. https://doi.org/10.3897/zookeys.861.34809
: Data type: molecular data
Supplementary material 3 from: Song R, Zhang D, Gao J-W, Cheng X-F, Xie M, Li H, Wu Y-A (2019) Characterization of the complete mitochondrial genome of Brentisentis yangtzensis Yu & Wu, 1989 (Acanthocephala, Illiosentidae). ZooKeys 861: 1-14. https://doi.org/10.3897/zookeys.861.34809
: Data type: molecular data
Supplementary material 2 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
: Data type: molecular data
Figure 8 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 8 BI tree inferred from MrBayes method based on PCG123R dataset. Numbers separated by slash (/) on node represent posterior probabilities based on PCG123, PCGAA and PCG123R datasets, respectively. The dash (-) represents unrecovered node in BI tree based on the PCG123 or PCGAA dataset.
Supplementary material 1 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
: Data type: molecular data
Figure 6 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 6 ML tree inferred from RAxML method based on PCG123R dataset. Numbers separated by slash (/) on node represent bootstrap replicates based on PCG123, PCGAA and PCG123R datasets, respectively. The dash (-) represents unrecovered node in ML tree based on the PCG123 or PCGAA dataset.
Figure 7 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 7 ML tree inferred from IQ-TREE method based on PCG123R dataset. Numbers separated by slash (/) on node represent bootstrap replicates based on PCG123, PCGAA and PCG123R datasets, respectively. The dash (-) represents unrecovered node in ML tree based on the PCG123 or PCGAA dataset.
Figure 5 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 5 A The overlapping region between atp8 and atp6. The nucleotides colored red indicate the sequence of overlapping region; the nucleotides with green underline indicate partial sequence of the atp8 gene, and the nucleotides with blue underline indicate the partial sequence of the atp6 gene B The intergenic region between nad6 and cob. The microsatellite (TA)n are marked red C The intergenic region between trnQ and nad2D The intergenic region between trnS2 and nad1. The nucleotides colored red indicate the conserved motif sequence E Schematic illustration of the A + T-rich region from all yponomeutoid mitogenomes. The conserved motif ATAG (colored red) and subsequent poly-T stretch (colored green), the conserved motif ATTTA (colored blue) and subsequent (TA)n sequence (colored orange) are emphasized. Dots indicate omitted sequences, and the number of dot is not proportional to nucleotide number of corresponding part.
Figure 4 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 4 Putative secondary structures of tRNAs from Yponomeuta montanatus mitogenome. The tRNAs are labeled with the abbreviations of their corresponding amino acids. The tRNA arms are illustrated as for trnV. Dashes indicate the Watson-Crick base pairs; dots indicate the wobble GU pairs; and the other non-canonical pairs are not marked. The nucleotides marked indicate the variable sites among published yponomeutoid mitogenomes.
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International Brain Laboratory public data
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OpenNeuro
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