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1,751 results for “molecular phylogenetics”

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FIGURE 5 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 5. Haematoloechus caballeroi (Skrjabin & Antipin, 1962), from the Tlaloc´s leopard frog, Rana tlaloci Hillis & Frost (Ranidae), from Xochimilco, Mexico. Male terminal genitalia; female proximal genialia. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.

opennotspecifiedNov 2018View details →
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FIGURE 2 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 2. One of 829 most parsimonious phylogenetic trees (consistency index = 0.625) of available 28S sequences for species in the genus Haematoloechus. Majority-rule consensus values above branches; bootstrap values below branches; *originally recorded as H. coloradensis by León-Règagnon & Brooks (2003); †originally recorded as H. cf. complexus León- Règagnon & Brooks (2003); §originally recorded as H. varioplexus by León-Règagnon et al. (2005); I = Clade I, H. longiplexus & relatives; II = Clade II, H. complexus & relatives; III = H. medioplexus & relatives.

opennotspecifiedNov 2018View details →
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FIGURE 6. Haematoloechus occidentalis n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 6. Haematoloechus occidentalis n. sp., from Rana sp., from Colima, México. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, IC = intestinal ceca, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles,–= ventral sucker. Scale bar = 1 mm.

opennotspecifiedNov 2018View details →
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FIGURE 12 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 12. Geographic distribution and morphological traits that lead to previous taxonomic assignments for species of Haematoloechus mapped on the phylogenetic hypothesis based on COI + 28S sequences. Outgroups: Brachycoelium salamandrae, Glypthelmins brownorumae, Opisthioglyphe ranae & Plagiorchis koreanus.

opennotspecifiedNov 2018View details →
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FIGURE 9. Haematoloechus veracruzanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 9. Haematoloechus veracruzanus n. sp., from the common marsh frog, Rana vaillanti, from Veracruz, Mexico. Male terminal genitalia; female proximal genialia. Dorsal view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.

opennotspecifiedNov 2018View details →
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FIGURE 1 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 1. One of 4 most parsimonious phylogenetic trees (consistency index = 0.449) of available COI sequences for species in the genus Haematoloechus. Majority-rule consensus values above branches; bootstrap values below branches; *originally recorded as H. coloradensis by León–Règagnon (2010); †originally recorded as H. complexus by León-Règagnon (2010); §originally recorded as H. varioplexus by León-Règagnon et al. (2005); I = Clade I, H. longiplexus & relatives; II = Clade II, H. complexus & relatives; III = H. medioplexus & relatives.

opennotspecifiedNov 2018View details →
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FIGURE 4 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 4. Haematoloechus caballeroi Skrjabin & Antipin, 1962, from the Tlaloc´s leopard frog, Rana tlaloci Hillis & Frost (Ranidae), from Xochimilco, Mexico. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, IC = intestinal ceca, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles, VS = ventral sucker. Scale bar = 1 mm

opennotspecifiedNov 2018View details →
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FIGURE 3 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 3. One of 1823 most parsimonious phylogenetic trees (consistency index = 0.546) of the concatenated matrix of available sequences COI + 28S of species of the genus Haematoloechus. Majority-rule consensus values above branches; bootstrap values below branches; *originally recorded as H. coloradensis by León-Règagnon (2010) and León-Règagnon & Brooks (2003); †originally recorded as H. cf. complexus by León-Règagnon (2010) and León-Règagnon & Brooks (2003); §originally recorded as H. varioplexus by Leon–Règagnon et al. (2005); I = Clade I, H. longiplexus & relatives; II = Clade II, H. complexus & relatives; III = H. medioplexus & relatives.

opennotspecifiedNov 2018View details →
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FIGURE 10. Haematoloechus mexicanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 10. Haematoloechus mexicanus n. sp., from the Montezuma leopard frog, Rana montezumae from Estado de Mexico, Mexico. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, OS = oral sucker, IC = intestinal ceca, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles, VS = ventral sucker. Scale bar = 1 mm.

opennotspecifiedNov 2018View details →
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FIGURE 11. Haematoloechus mexicanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 11. Haematoloechus mexicanus n. sp., from the Montezuma leopard frog, Rana montezumae from Estado de Mexico, Mexico. Male terminal genitalia; female proximal genialia. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.

opennotspecifiedNov 2018View details →
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FIGURE 8. Haematoloechus veracruzanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 8. Haematoloechus veracruzanus n. sp., from the common marsh frog, Rana vaillanti, from Veracruz, Mexico. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, IC = intestinal ceca, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles, VS = ventral sucker. Scale bar = 1 mm.

opennotspecifiedNov 2018View details →
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FIGURE 7. Haematoloechus occidentalis n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

FIGURE 7. Haematoloechus occidentalis n. sp., from Rana sp., Colima, México. Male terminal genitalia; female proximal genialia. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.

opennotspecifiedNov 2018View details →
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FIGURE 10 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 10. Phylogeny of the liparid clade Aenigmoliparia from the majority rule (50%) consensus tree from the Bayesian inference of a 490 bp alignment of 270 cytochrome c oxidase subunit one gene (COI) sequences. Nodal values represent Bayesian posterior probabilities and bootstrap values from the maximum likelihood analysis (above and below branches, respectively). Species names are followed by a catalog number or BOLD "Sequence ID" number when represented by a sequence from a single specimen in our dataset. N indicates number of sequences, when multiple sequences support a branch tip. Boldface species names indicate species placed in different positions in COI and RADseq trees. Only unique sequences were subjected to the analyses (Appendix Table 1); other identical sequences surveyed are listed in Appendix Table 2.

opennotspecifiedJul 2019View details →
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FIGURE 7 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 7. Majority-rule (50%) consensus phylogenetic tree of Shen et al. (2017, after fig. S6), derived from a Bayesian inference of a 440 bp alignment of cytochrome c oxidase subunit 1 gene (COI) sequences for 84 samples of 83 liparid species. Bayesian posterior probabilities are above branches. Tree is rooted with species of the Cyclopteridae. Corrected identifications based on our study are in parentheses.

opennotspecifiedJul 2019View details →
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FIGURE 9 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 9. Phylogeny of the genus Liparis, excluding L. fucensis depicted in Figure 8, from the majority rule (50%) consensus tree from the Bayesian inference of a 490 bp alignment of 270 cytochrome c oxidase subunit one gene (COI) sequences. Nodal values represent Bayesian posterior probabilities and bootstrap values from the maximum likelihood analysis (above and below, respectively). Species names are followed by a catalog number or BOLD "Sequence ID" number when represented by a sequence from a single specimen in our dataset. N indicates number of sequences, when multiple sequences support a branch tip. Only unique sequences were subjected to the analyses (Appendix Table 1); other identical sequences surveyed are listed in Appendix Table 2.

opennotspecifiedJul 2019View details →
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FIGURE 6 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 6. Majority rule (50%) consensus phylogenetic tree of Gardner et al. (2016, after fig. 4), derived from Bayesian inference and maximum parsimony analysis of a 492 bp alignment of cytochrome c oxidase subunit 1 gene (COI) sequences of 492 bp for 128 samples of 23 liparid species. Bootstrap values are above and Bayesian posterior probabilities are below branches that lead to multiple species. Tree is rooted with Liparis gibbus. Corrected identifications based on our study are in parentheses.

opennotspecifiedJul 2019View details →
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FIGURE 12 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 12. Phylogeny of selected eastern North Pacific liparids inferred using genome-wide restriction-site associated DNA sequences (RADseq; –p 28, –r 0.5) with maximum likelihood and Bayesian methods. Majority rule (50%) consensus tree of individual sequences. Nodal values represent Bayesian posterior probabilities and bootstrap values from the maximum likelihood analysis (above and below branches, respectively); double asterisks denote Bayesian posterior probabilities of 1 and bootstrap support of 100%. Species names are followed by the University of Washington Fish Collection catalog number for the specimen. Boldface species names indicate species placed in different positions in COI and RADseq trees.

opennotspecifiedJul 2019View details →
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FIGURE 4 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 4. Unrooted neighbor-joining tree of Steinke et al. (2009, after fig. 4), derived from cluster analysis of a 650 bp alignment of cytochrome c oxidase subunit 1 gene (COI) sequences for 78 samples of 19 liparid species. Bootstrap values>80 are above branches leading to multiple species. Corrected identifications based on our study are in parentheses.

opennotspecifiedJul 2019View details →
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FIGURE 2 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 2. Phylogenetic hypothesis of Balushkin (1996, after fig. 4), derived from a manual cladistic analysis of morphological data, including seven osteological and external characters, for 26 liparid genera.

opennotspecifiedJul 2019View details →
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FIGURE 1 in Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

FIGURE 1. Phylogenetic hypothesis of Kido (1988, after fig. 20), derived from a maximum parsimony analysis of morphological data, using 34 osteological and external characters, for 60 liparid species.

opennotspecifiedJul 2019View details →

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