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5,805 results for “Data model”
Auxiliary data for Moustakis et al. 2024 "Temperature overshoot responses to ambitious forestation in an Earth System Model"
<p>The netcdf file "Moustakis_et_al_2024_Data.nc" contains all the key variables presented in the figures of the manuscript of Moustakis et al. 2024: "Temperature overshoot responses to ambitious forestation in an Earth System Model".</p> <p>Please read the README.txt file for more information on the variables included.</p> <p>For any further queries please refer to the corresponding author, Yiannis Moustakis: <br>yiannis.moustakis@geographie.uni-muenchen.de</p> <p> </p>
"Demand-side policies for power generation in response to the energy crisis: A model analysis for Italy", scripts and data
<p>This repository contains the data, scripts and results for the paper "Demand-side policies for power generation in response to the energy crisis: A model analysis for Italy", https://doi.org/10.1016/j.esr.2024.101329.</p> <p>Results in the paper are divided into three sections, corresponding to the numbers of the folders inside this dataset. They are described as follows:</p> <p>1 - EU policy impact: What is the impact on the Italian electricity of the european proposal of cutting power demand and shifting it during peak hours on gas consumption, system costs and emissions?</p> <p>2 - Gas cost sensitivity: Which would be Italy’s most convenient power system considering different gas prices?</p> <p>3 - DSM in mitigation: What could be the role of demand side measures in power systems with a high penetration of RES?</p>
Research data related to the article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach"
<div><strong>Research Data related to the article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach" by Seibert et al. (2024) published in <em>Advances in Water Resources</em></strong></div> <div> </div> <div>Dear reader,</div> <div> </div> <div>reasearch data are provided for the research article "Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach" by Seibert et al. (2024) published in <em>Advances in Water Resources</em> (https://doi.org/10.1016/j.advwatres.2024.104763). The authors hope that the research data allows for a better understanding of the modeling workflow. The research data covers the following files:</div> <div> <ul> <li>Python scripts to create the models <ul> <li>Model scripts using FloPy (Bakker et al., 2016) are stored as .py files in './model_data/flopy_scripts/', named 'model_variant_vXYZ.py', where 'XYZ' is a wildcard for the model number. </li> <li>--> Note that model numbers correspond to the different model variants as referred to in the article, see overview below.</li> <li>The model scripts require postfix files, stored in './model_data/flopy_scripts/postfix/', a PHREEQC database file, stored in './model_data/flopy_scripts/template_database/', as well as spreadsheets that contain the initial concentrations as well as reaction rate parameters needed by PHT3D, stored as .xlsx files in './model_data/flopy_scripts/', to create the models.</li> <li>Note that the .xlsx files are used by PHT3D-FSP in the model scripts to generate relevant PHT3D input files (compare https://doi.org/10.5281/zenodo.7559750 for more details).</li> </ul> </li> <li>SEAWAT/PHT3D input files <ul> <li>Original SEAWAT and PHT3D input files, which were created with the corresponding model scripts previously (see step before).</li> <li>Input files are stored in './model_data/model_files/vXYZ/model_files/' for each model variant, where 'XYZ' is a wildcard for the model number.</li> <li>SEAWAT/PHT3D executables can directly run the model files files. Thus, the files don't need to be re-created via the previous step.</li> </ul> </li> <li>Model outputs <ul> <li>Model output data is stored as NumPy arrays in './model_data/model_files/vXYZ/npy_arrays/', where 'XYZ' is a wildcard for the model number.</li> <li>The script './model_data/flopy_scripts/template_output/pht3d_output_hpc_v006.py' was used to generate the output files.</li> <li>2-D species concentration arrays are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/species/', where 'XYZ' is a wildcard for the model number.</li> <li>Species min./max. concentration arrays are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/min_max/', where 'XYZ' is a wildcard for the model number.</li> <li>2-D water budget arrays (CH & WEL boundaries) are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/budgets/', where 'XYZ' is a wildcard for the model number.</li> <li>Model discretization information (ncol, nrow, nlay etc.) are stored in the subfolder './model_data/model_files/vXYZ/npy_arrays/discretization/', where 'XYZ' is a wildcard for the model number.</li> </ul> </li> <li>Figure files <ul> <li>Original figure files as well as the corresponding Python scripts to create the figures are stored in the subfolder'./figures'.</li> </ul> </li> </ul> <p>Numbering of the model variants is as follows:<br><br>v401 --> VAR-conservative<br>v402 --> VAR-OM<br>v403 --> VAR-C/I<br>v404 --> VAR-C/I/S<br>v405 --> VAR-C/I/P<br>v406 --> VAR-C/I/P/H<br>v407 --> VAR-C/I/P/V<br>v408 --> VAR-C/I/P-Co<br>v409 --> VAR-all<br>v410 --> VAR-all (no C)</p> </div> <div> </div> <div>Literature:</div> <div> </div> <div>Bakker, M., Post, V., Langevin, C.D., Hughes, J.D., White, J.T., Starn, J.J. and Fienen, M.N., 2016. Scripting MODFLOW model development using Python and FloPy. Groundwater, 54(5), pp.733-739. https://doi.org/10.1111/gwat.12413</div> <div> </div> <div>Seibert, S.L., Massmann, G., Meyer, R., Post, V.E.A., Greskowiak, J., 2024. Impact of mineral reactions and surface complexation on the transport of dissolved species in a subterranean estuary: Application of a comprehensive reactive transport modeling approach. Advances in Water Resources. https://doi.org/10.1016/j.advwatres.2024.104763</div> <div> </div> <div><strong>Contact one of the authors if you have further questions</strong>: Stephan L. Seibert (stephan.seibert@uol.de), Janek Greskowiak (janek.greskowiak@uol.de), Vincent E.A. Post (vincent@edinsi.nl), Rena Meyer (rena.meyer@uol.de) or Gudrun Massmann (gudrun.massmann@uol.de)</div>
Figure 6. The occurrence with data from subset 1 in Modelling hot spot areas for the invasive alien plant Elodea nuttallii in the EU
Figure 6. The occurrence with data from subset 1 (A) and subset 3 (B). The combined output of both is also presented (C). Areas with low uncertainty and above the habitat suitability threshold (i.e. priority areas) are marked in red while areas with high uncertainty are marked in yellow. The grid size of all 3 maps is 1 km2.
Data from: The importance of biotic interactions in distribution models of wild bees depends on the type of ecological relations, spatial scale and range
<p>Studies have found that biotic information can play an important role in shaping the distribution of species even at large scales. However, results from species distribution models are not always consistent among studies, and the underlying factors that influence the importance of biotic information to distribution models, are unclear. 2. We studied wild bees and plants, and cleptoparasite bees and their hosts in the Netherlands to evaluate how the inclusion of their biotic interactions affects the performance of species distribution models. We assessed model performance through spatial block cross-validation and by comparing models with interactions to models where the interacting species were randomized. Finally, we evaluated how, (i) spatial resolution, (ii) taxonomic rank (genus or species), (iii) degree of specialization, (iv) distribution of the biotic factor, (v) bee body size and (vi) type of biotic interaction, affect the importance of biotic interactions in shaping the distribution of wild bee species using generalized linear models. 3. We found that the models of wild bees improved when the biotic factor was included. The model performance improved the most for parasitic bees. Spatial resolution, taxonomic rank, distribution range of the biotic factor, and degree of specialization of the modelled species all influenced the importance of the biotic interaction to the models. 4. We encourage researchers to include biotic interactions in species distribution models, especially for specialized species and when the biotic factor has a limited distribution range. However, before adding the biotic factor we suggest considering different spatial resolutions and taxonomic ranks of the biotic factor. We recommend using single species or genus data as a biotic factor in the models of specialist species and for the generalist species, we recommend using an approximate measure of interactions, such as flower richness.</p>
Data from: Performance of unmarked abundance models with data from machine-learning classification of passive acoustic recordings
<p>The ability to conduct cost-effective wildlife monitoring at scale is rapidly increasing due to availability of inexpensive autonomous recording units (ARUs) and automated species recognition, presenting a variety of advantages over human-based surveys. However, estimating abundance with such data collection techniques remains challenging because most abundance models require data that are difficult for low-cost monoaural ARUs to gather (e.g., counts of individuals, distance to individuals), especially when using the output of automated species recognition. Statistical models that do not require counting or measuring distances to target individuals in combination with low-cost ARUs provide a promising way of obtaining abundance estimates for large-scale wildlife monitoring projects but remain untested. We present a case study using avian field data collected in forests of Pennsylvania during the Spring of 2020 and 2021 using both traditional point counts and passive acoustic monitoring at the same locations. We tested the ability of the Royle-Nichols and time-to-detection models to estimate abundance of two species from detection histories generated by applying a machine-learning classifier to ARU-gathered data. We compared abundance estimates from these models to estimates from the same models fit using point-count data and to two additional models appropriate for point counts, the N-mixture model and distance models. We found that the Royle-Nichols and time-to-detection models can be used with ARU data to produce abundance estimates similar to those generated by a point-count based study but with greater precision. ARU-based models produced confidence or credible intervals that were on average 31.9% ( 11.9 SE) smaller than their point-count counterpart. Our findings were consistent across two species with differing relative abundance and habitat use patterns. The higher precision of models fit using ARU data is likely due to higher cumulative detection probability, which itself may be the result of greater survey effort using ARUs and machine-learning classifiers to sample significantly more time for focal species at any given point. Our results provide preliminary support the use of ARUs in abundance-based study applications, and thus may afford researchers a better understanding of habitat quality and population trends, while allowing them to make more informed conservation actions and recommendations.</p>
Climate model and proxy input data for PaleoDA South America reconstruction
<p>This repository contains input data needed to run the paleoclimate reconstruction code for "A continental reconstruction of hydroclimatic variability in South America during the past 2000 years", submitted to Climate of the Past in February 2024 [https://egusphere.copernicus.org/preprints/2024/egusphere-2024-545/]. The Github repository is located here: https://github.com/mchoblet/paleoda_sa/tree/main</p> <p><strong>Structure:</strong></p> <p>model_data: One File for each Model (GISS, CCSM (isoGSM), CESM, ECHAM5, iHADCM3) and variable (prec,tsurf,d18O, SPEI). Monthly resolution.</p> <p>proxy_data: One File for each proxy record type (Trees and corals contain a separate file for annual and djf linear regression parameters, the proxy data as such is the same). The data has yearly resolution, and thus also contains NaNs for when a year is not covered by a proxy. Note, that these time series are resampled to a regular resolution in the multi-time scale PaleoDA code.</p> <p><strong>Climate Model Data:</strong></p> <p>The original data can be found in https://zenodo.org/records/6610684. The data in this repository here has been slightly modified and regridded for easier processing by the reconstruction algorithm. When using the data here, please also cite https://zenodo.org/records/6610684 and the publication </p> <p>"Investigating stable oxygen and carbon isotopic variability in speleothem records over the last millennium using multiple isotope-enabled climate models", by </p> <div>Janica C. Bühler, Josefine Axelsson, Franziska A. Lechleitner, Jens Fohlmeister, Allegra N. LeGrande, Madhavan Midhun, Jesper Sjolte, Martin Werner, Kei Yoshimura, and Kira Rehfeld (https://cp.copernicus.org/articles/18/1625/2022/cp-18-1625-2022.html)</div> <p><strong>Climate Proxy Data:</strong></p> <p>A regional proxy record subselection for South America. See References in Appendix A Choblet et al. (https://egusphere.copernicus.org/preprints/2024/egusphere-2024-545/). The DOI of each record is stored as Metadata.</p> <p><strong>How were these files created?</strong></p> <p>The steps are documented in the the Github repository https://github.com/mchoblet/paleoda_sa/tree/main (data_preprocessing). The SPEI drought index has ben computed from modeled precipitation and temperature using Thornthwaite's method (using the Climate Indices package, https://github.com/monocongo/climate_indices).</p> <p><strong>Manuscript revision in July 2024:</strong></p> <ul> <li>Added historical documentary indices time series and the Puyehue lake record. For technical reasons in the PaleoDA algorithm, it is kept apart from the other lake records. The reconstruction code on Github has been updated for including these datasets.</li> </ul> <p> </p> <p> </p> <p> </p> <p> </p> <div> </div>
Data from: Integrating genomic data and simulations to evaluate alternative species distribution models and improve predictions of glacial refugia and future responses to climate change
<p>Climate change poses a threat to biodiversity, and it is unclear whether species can adapt to or tolerate new conditions, or migrate to areas with suitable habitats. Reconstructions of range shifts that occurred in response to environmental changes since the last glacial maximum from species distribution models (SDMs) can provide useful data to inform conservation efforts. However, different SDM algorithms and climate reconstructions often produce contrasting patterns, and validation methods typically focus on accuracy in recreating current distributions, limiting their relevance for assessing predictions to the past or future. We modeled historically suitable habitat for the threatened North American tree green ash (<em>Fraxinus pennsylvanica</em>) using 24 SDMs built using two climate models, three calibration regions, and four modeling algorithms. We evaluated the SDMs using contemporary data with spatial block cross-validation and compared the relative support for alternative models using a novel integrative method based on coupled demographic-genetic simulations. We simulated genomic datasets using habitat suitability of each of the 24 SDMs in a spatially-explicit model. Approximate Bayesian Computation (ABC) was then used to evaluate the support for alternative SDMs through comparisons to an empirical population genomic dataset. Models had very similar performance when assessed with contemporary occurrences using spatial cross-validation, but ABC model selection analyses consistently supported SDMs based on the CCSM climate model, an intermediate calibration extent, and the generalized linear modeling algorithm. Finally, we projected the future range of green ash under four climate change scenarios. Future projections using the SDMs selected via ABC suggest only minor shifts in suitable habitat for this species, while some of those that were rejected predicted dramatic changes. Our results highlight the different inferences that may result from the application of alternative distribution modeling algorithms and provide a novel approach for selecting among a set of competing SDMs with independent data.</p>
Input data and results of the RECC v2.5 model for the transformation scenarios of the global building stock
<p>This dataset contains the input data and core results of the RECC v2.5 model for the transformation scenarios of the global building stock. For details abou the RECC model, see DOI <a href="https://doi.org/10.1111/jiec.13023" target="_blank" rel="noopener">https://doi.org/10.1111/jiec.13023</a> and the RECC model landing page: <a href="https://www.industrialecology.uni-freiburg.de/odym-recc" target="_blank" rel="noopener">https://www.industrialecology.uni-freiburg.de/odym-recc</a></p> <p>The following data are included in this dataset:</p> <ul> <li>The entire model input database (120 model parameters)</li> <li>The parameters for the sensitivity analysis (8 parameters)</li> <li>The 70 folders with the core results</li> <li>The master classification file RECC_Classifications_Master_V2.0.xlsx</li> <li>The model config file RECC_Config.xlsx</li> <li>The list of scenario configurations RECC_ModelConfig_List.xlsx</li> <li>The result compilation and exporting configuration file RECCv2.5_EXPORT_Combine_Select.xlsx</li> <li>The main result summary file (extracted from the 70 result folders) Results_Extracted_RECCv2.5_10Regs_sep.xlsx</li> <li>The result summary file for comparison with the CRAFT model timber supply RECCv2.5_10Regs_CRAFT_Coupling_SHARE.xlsx</li> <li>The results of the sensitivity analysis: Results_Extracted_RECCv2.5_10Regs_Sensitivity_sep.xlsx</li> </ul> <p>Note that the result folders of the sensitivity analysis are not archived here (too little information in relation to the data volume). They can be requested from the author. The results can also be recreated by running the RECC model with the sensitivity analysis parameters.</p> <p>The model itself is available as Python code from <a href="https://github.com/IndEcol/RECC-ODYM" target="_blank" rel="noopener">https://github.com/IndEcol/RECC-ODYM</a></p>
Data set, Model, and Catalog for: Data-driven stellar intrinsic colors and dust reddenings for spectro-photometric data
<p>Intrinsic colors of stars are essential for the studies on both stellar physics and dust reddening. In this work, we developed an XGBoost model to predict the stellar intrinsic colors with the atmospheric parameters, Teff , log g, and [M/H], which is an improvement of the widely used blue-edge method. The dust reddening toward each line-of-sight can then be calculated by the observed colors minus the derived intrinsic colors.</p> <p>Here we provide the related data sets:</p> <ul> <li>xgb_model.pkl: the trained XGBoost model.</li> <li>use_xgb.py: a simple script showing how to use the XGBoost model to predict intrinsic colors.</li> <li>data_set.fits: this fits file contains the training and test sets, separated into four data arrays: <ul> <li>X_train: X-data (teff,logg,mh) of the training set.</li> <li>X_test: X-data (teff,logg,mh) of the test set.</li> <li>y_train: y-data (BP-RP, BP-Ks, J-Ks) of the training set.</li> <li>y_test: y-data (BP-RP, BP-Ks, J-Ks) of the test set.</li> </ul> </li> <li>IC_catalog.csv: a catalog containing a representative set of intrinsic colors at three bands ('BPRP0', 'BPK0', and 'JK0' in columns) as a function of typical Teff, logg, and [M/H] ('teff', 'logg', and 'mh' in columns).</li> </ul> <p>With the above data and model, users can apply the trained XGBoost to new sources to predict their intrinsic colors and calculate their dust reddenings. One can further control the quality of the prediction by selecting training-like sources with the training set and estimating the <a>generalization error by the test set.</a></p>
Modeling actinic flux and photolysis frequencies in dense biomass burning plumes - Data asset
<p>Dataset is related to the paper by Tirpitz et al.: Modeling actinic flux and photolysis frequencies in dense biomass burning plumes</p> <p>Contains the preprocessed model input data and the modeling results (actinic fluxes and photolysis frequencies) for the Shady wildfire on July 25, 2019. The VPC model is on a private Github-Repository. Access is provided by the authors on request. See paper and INFO.txt in Data.zip for more information.</p> <p>Correspondence:<br> Jan-Lukas Tirpitz: jltirpitz@atmos.ucla.edu<br> Jochen Stutz: jochen@atmos.ucla.edu</p> <p>Other contributors:<br> Santo Fedele Colosimo<br> Nathaniel Brockway<br> Robert Spurr<br> Matthew Christi<br> Samuel Hall<br> Kirk Ullmann <br> Johnathan Hair<br> Taylor Shingler<br> Rodney Weber<br> Jack Dibb<br> Richard Moore<br> Elizabeth Wiggins<br> Vijay Natraj<br> Nicolas Theys</p>
X-ray image reconstruction for continuous acquisitions with a generalized motion model: Data
<p>This dataset contains two experimentally measured X-ray scans, one reference scan and one scan in which the object translates while rotating. The reference scan consists of 3600 projection images, with one flat field and dark field image. The roto-translational scan consists of 360 projections, also with a flat field and dark field image. The acquisition files containing all relevant specifications of the scanner and the acquisition settings are also supplied.</p> <p>The code for reconstruction is available at <a href="https://github.com/BenHuyge/RACE">GitHub.</a></p>
Model configuration files and forcing data for Implementing deep soil and dynamic root uptake in Noah-MP (v4.5): impact on Amazon dry-season transpiration
<p>This repository includes the model configuration files, input data, and forcing data used for simulations in Bieri et al. (2025) - <em>Implementing deep soil and dynamic root uptake in Noah-MP (v4.5): impact on Amazon dry-season transpiration.</em></p> <ul> <li>forcing.tar.gz - Compressed folder containing HRLDAS Noah-MP model forcing NetCDF files <ul> <li>These forcing files were derived from the NASA Global Land Data Assimilation System (GLDAS; Beaudoing et al. 2020)</li> <li>The compressed file contains 3-hourly forcing files for the entire simulation period (01 Jun 2000 to 31 Dec 2019)</li> </ul> </li> <li>wrfinput_d01 - NetCDF file used as HRLDAS input file in HRLDAS Noah-MP simulations <ul> <li>Generated from WRF WPS (https://github.com/wrf-model/WPS)</li> </ul> </li> <li>Namelist files <ul> <li>namelist.hrldas.ROOT - Model namelist settings used for ROOT experiment</li> <li>namelist.hrldas.SOIL - Model namelist settings used for SOIL experiment</li> <li>namelist.hrldas.GW - Model namelist settings used for GW experiment</li> <li>namelist.hrldas.CONTROL - Model namelist settings used for FD (CONTROL) experiment</li> </ul> </li> </ul>
Fig. 5 in Phylogeography and potential glacial refugia of terrestrial gastropod Faustina faustina (Rossmässler, 1835) (Gastropoda: Eupulmonata: Helicidae) inferred from molecular data and species distribution models
Fig. 5 BEAST phylogenetic tree based on the COI sequences. Node values indicate divergence estimated in MYA
Fig. 7 in Phylogeography and potential glacial refugia of terrestrial gastropod Faustina faustina (Rossmässler, 1835) (Gastropoda: Eupulmonata: Helicidae) inferred from molecular data and species distribution models
Fig. 7 Areas of climatic stability over time periods from the LGM through the present, based on summed climatic suitability models for the LGM, mid-Holocene, and present day for three differed GCMs. Stability increase from red to yellow color. White-filled areas show the
Data sets of multi-body models for conventional, articulated, and equidistant-axles trains and single span bridges
<p>Information about characteristics of multi-body models of conventional, articulated, and equidistant-axles trains.</p> <p>Information about bridge data set, used for vehicle-bridge interaction investigations.</p>
BRAIN Journal-Redesigning a Flexible Material Master Data Application with Language Dependency-Figure 3. The logical data model of tables and views
<p>The five tables, named TAB, TABT, AREA, ARET and FLD, are combined within three views (TABV, AREV and FLDV) which build a cluster view, TAFC (figure 3). </p>
BRAIN Journal-Prediction of Thyroid Disease Using Data Mining Techniques-Figure 2. Attributes of the classification models used in the experiments
<p>The authors used for their experiments a data set (UCI, 2016) containing 756 records about persons with thyroid dysfunctions. The classification model has 22 attributes; the class attribute is the target and it has three possible values: hypothyroidism, hyperthyroidism and normal. The current data set was extracted and preprocessed from the original file. A description of the attributes used in the experiments is given in Figure 2 (an extract from thyroid.arff test file). </p>
BRAIN Journal-Auto-generative Learning Objects in Online Assessment of Data Structures Disciplines-Figure 2. Auto-generative Learning Object Model Definition
<p>In this section, we will present the structure of AGLOs in the context of our approach. The AGLO meta-model is structured in XML as in Figure 2,a refinement from Chirila, Ciocarlie, and Stoicu (2015). The AGLO definition contains several sections like name, scenario, theory, question, answers, and feedback (line 01). The name element contains the name of the AGLO, possibly a small description in the human language (line 02). The section of the scenario (line 03) contains a comment (line 04) followed by a set of symbol definitions. The comment should describe the imagined scenario in details and it has the same role as code comments. The symbol is the central element of the AGLO model. The symbol has a name and is very similar to programming language variables. Symbols may be called also parameters since they control the content of the AGLO content in the process of instantiation. </p>
Pore network modeling data for Fontainebleau and Berea Sandstones
<p>This data set contains results from pore network modeling of one sample of dry Fontainebleau sandstone (Case 1), and two samples of Berea sandstones (dry, Case 2, oil and water saturated, case 3). For each sample, there are two .csv file. One file containing information about pockets (pores) and the other containing information about throats. The content of each column is described in the heading of the files.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.