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741 results for “Decay”
Analysis of mRNA decay intermediates in Bacillus subtilis 3' exoribonuclease and RNA helicase mutant strains
GEO Series GSE192670. Bacillus subtilis. 12 samples. Type: Expression profiling by high throughput sequencing.
Nonsense-mediated decay constrains nociceptive responses through repression of the integrated stress response
GEO Series GSE211127. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Ribosome recycling by ABCE1 links lysosomal function and iron homeostasis to 3ʹ UTR- directed regulation and nonsense-mediated decay
GEO Series GSE144165. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Other.
Hematopoietic stem cell expansion through suppression of YTHDF2-mediated m6A-marked mRNA decay
GEO Series GSE107957. Homo sapiens; Mus musculus. 27 samples. Type: Expression profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing.
Target discrimination in nonsense-mediated mRNA decay requires Upf1 ATPase activity
GEO Series GSE69586. Homo sapiens. 14 samples. Type: Other.
Global analysis of mRNA decay and abundance in Escherichia coli
GEO Series GSE4344. Escherichia coli. 16 samples. Type: Expression profiling by array.
Cytoplasmic mRNA decay by the anti-viral nuclease RNase L promotes transcriptional repression [S2P Pol II CUT&RUN]
GEO Series GSE313712. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Specific tRNAs promote mRNA decay by recruiting the CCR4-NOT complex to translating ribosomes (Ribo-seq)
GEO Series GSE268324. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
mRNA Decay in E. Coli Degradosome Mutants and their Parental Strains
GEO Series GSE3978. Escherichia coli. 61 samples. Type: Expression profiling by array.
Spliceosome-Mediated-Decay (SMD) regulates expression of non-intronic genes in budding yeast
GEO Series GSE49966. Saccharomyces cerevisiae. 7 samples. Type: Expression profiling by high throughput sequencing.
Measurement of temperature affects on Arabidopsis transcription and decay rates
GEO Series GSE53071. Arabidopsis thaliana. 24 samples. Type: Expression profiling by array.
The integrated stress response finetunes 18S nonfunctional rRNA decay
GEO Series GSE255784. Homo sapiens. 46 samples. Type: Expression profiling by high throughput sequencing; Other.
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming
GEO Series GSE151517. Homo sapiens; Mus musculus. 46 samples. Type: Non-coding RNA profiling by high throughput sequencing; Other.
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
GEO Series GSE82486. Trametes cinnabarina; Trametes sanguinea; Trametes coccinea. 50 samples. Type: Expression profiling by high throughput sequencing.
Analysis of nonsense-mediated mRNA decay in daf-2 mutants
GEO Series GSE94077. Caenorhabditis elegans. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Raw data for TMA-DPH decay-fluorescence in Prola 2020-SciAdv
<p>1-(4-Trimethylammoniophenyl)-6-phenyl-1,3,5-hexatriene p-toluenesulfonate (TMA‑DPH, Sigma Aldrich) was used to monitor physical properties of mitochondrial membranes of 7-to-8-mo-old mice. TMA‑DPH is composed of a cationic substitute (TMA) that anchors at the polar heads of the membrane, while allowing the fluorescent hydrophobic probe DPH to be located in nonpolar regions. To limit fluorescent noise, mitoplasts were resuspended in the Hypotonic Buffer (sucrose 9 mM, mannitol 29 mM, Hepes 0.3 mM, pH 7.4) as described hereafter.</p> <p>Experiments were repeated five times using independent samples, each from different mice. Decay-fluorescence measurements were performed on each sample at 37 °C after a measurement of the instrumental response of the spectrofluorimeter used to measure fluorescence-decay (“prompt”). Thirty µl of sample (DO<sub>600</sub> = 0.055) diluted in 2.97 ml of Hypotonic Buffer were introduced into spectroscopic quartz cuvette with an optical path length of one cm (VWR International).</p> <p>Fluorescence-decay was measured by the time-correlated single-photon counting (TCSPC) method using a Horiba-Fluoromax-4® spectrofluorimeter (Horiba) equipped with a 370-nm laser diode (NanoLED C2, Horiba) as the source of excitation. Fluorescence decays were measured in TCSPC setup (Deltahub, Horiba). The Instrument Response Function (IRF) was about 160 ps (measured at 370 nm using the hypotonic buffer). Emission and excitation wavelength of TMA-DPH were respectively fixed at 370 nm and 431 ± 1.1 nm. Each decay curve corresponded to 10,000 counts.</p>
FIGURE 2. A in A novel Mariannaea species isolated from decayed pine needles in Japan
FIGURE 2. A maximum-likelihood phylogenetic tree of Mariannaea imbricata sp. nov. and related species belonging to the M. punicea clade based on ITS sequences. Bootstrap support values (> 50 %) are presented at the nodes. Mariannaea lignicola was selected as an outgroup.
FIGURE 1. A in A novel Mariannaea species isolated from decayed pine needles in Japan
FIGURE 1. A maximum-likelihood phylogenetic tree of Mariannaea imbricata sp. nov. and related species based on ITS and TUB-2 datasets. Bootstrap support values (> 50 %) are presented at the nodes. Calonectria ilicicola was selected as an outgroup.
FIGURE. Mucispora hydei (GMB0028, holotype). a. Decaying wood. b, c. Colony on wood. d, e, g. Conidiophores with conidia. f. Matured conidia. h–j. Conidiophore. Scale bars: b =100 µm, c =200 µm, d, e, h–j = 20 µm, f, g = 40 µm. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Mucispora hydei (GMB0028, holotype). a. Decaying wood. b, c. Colony on wood. d, e, g. Conidiophores with conidia. f. Matured conidia. h–j. Conidiophore. Scale bars: b =100 µm, c =200 µm, d, e, h–j = 20 µm, f, g = 40 µm.
Integrative and accurate annotations enhance current nonsense-mediated mRNA decay rules
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