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FIGURE 2 in Resurrection of the genus Similisinocarum (Apiaceae) based on evidence from morphology and ITS sequences
FIGURE 2. Boxplots showing the genetic distances within and among Acronema, Oreocomopsis, Similisinocarum, Sinocarum and Pternopetalum. Congeneric variation is colored orange and heterogeneric variation is green.
FIGURE 1 in Resurrection of the genus Similisinocarum (Apiaceae) based on evidence from morphology and ITS sequences
FIGURE 1. Bayesian tree of Similisinocarum normanianum (bold) and related species of Acronema clade in Apiaceae inferred by ITS sequences. Numbers above and below branches indicate maximum likelihood bootstrap (bold) and Bayesian posterior probability, respectively.
FIGURE 3 in Pluteus anatolicus (Pluteaceae, Agaricales): a new species of Pluteus sect. Celluloderma from Turkey based on both morphological and molecular evidence
FIGURE 3. Microcharacters of Pluteus anatolicus (OKA-TR202; holotype): a. Basidiospores. b. Basidia and basidioles. c. Pleurocystidia. Scale bars: a = 5 μm; b, c = 10 μm.
FIGURE 4 in Pluteus anatolicus (Pluteaceae, Agaricales): a new species of Pluteus sect. Celluloderma from Turkey based on both morphological and molecular evidence
FIGURE 4. Microcharacters of Pluteus anatolicus (OKA-TR202; holotype): a. Cheilocystidia. b. Pileipellis elements. Scale bars = 10 μm.
FIGURE 1 in Pluteus anatolicus (Pluteaceae, Agaricales): a new species of Pluteus sect. Celluloderma from Turkey based on both morphological and molecular evidence
FIGURE 1. Phylogenetic relationships of Pluteus sect. Celluloderma inferred from Bayesian analysis of the ITS-rDNA dataset. Volvopluteus earlei (MK204989) and V. gloiocephalus (MK616345) were used as outgroup. BPP ≥ 0.80 and MLB ≥ 80% are shown above individual branches. Bold branches represent BPP ≥ 0.95 and MLB ≥ 90%. GenBank or UNITE accession numbers, taxon names, collection (voucher, strain or herbarium) numbers, and geographic origins of used sequences are provided. Sequences of new species from Turkey are highlighted in bold.
FIGURE 2 in Pluteus anatolicus (Pluteaceae, Agaricales): a new species of Pluteus sect. Celluloderma from Turkey based on both morphological and molecular evidence
FIGURE 2. Fresh basidioma of Pluteus anatolicus (OKA-TR202; holotype) on natural habitat. a, c. Basidioma in side view. b. Close-up of the pileus surface. d. Lamellae view. Scale bars: a, c = 10 mm; b, d = 5 mm.
Figure 1 in Evidence of early evolution of Australidelphia (Metatheria, Mammalia) in South America: phylogenetic relationships of the metatherians from the Late Palaeocene of Itaboraí (Brazil) based on teeth and petrosal bones
Figure 1. Right petrosal of MNRJ 6734-V (Type VI) in ventral (A), dorsal (B), and lateral (C) views. Abbreviations: al, anterior lamina; av, aqueductus vestibuli; cc, crus commune; cp, crista parotica; cr, crista petrosa; ctpp, caudal tympanic process of petrosal; er, epitympanic recess; fai, foramen acousticum inferius; fas, foramen acousticum superius; fc, fenestra cochleae; fi, fossa incudis; fn, facial nerve; fs, facial sulcus; fsa, fossa subarcuata; fss, foramen for the sigmoid sinus; fv, fenestra vestibuli; gg, location of the subjacent geniculate ganglion; gpn, greater petrosal nerve; hF, hiatus Fallopii; iam, internal auditory meatus; ica, internal carotid artery; ips, inferior petrosal sinus; lapc, lateral aperture of the prootic canal; lhv, lateral head vein; lw, lateral wall of epitympanic recess (tuberculum tympani); me, mastoid exposure; mp, mastoid tympanic process; pcv, prootic canal vein; pfc, prefacial commissure; pr, promontorium; ps, prootic sinus; psc, posterior semicircular canal; psv?, probable prootic sinus vein; rtpp, rostral tympanic process of petrosal; sff, secondary facial foramen; sica, sulcus for the internal carotid artery; sips, sulcus for the inferior petrosal sinus; smn, stylomastoid notch; spev, sphenoparietal emissary vein; sps, sulcus for the prootic sinus; spsv?, sulcus for a probable vein connected to the prootic sinus; ss, sigmoid sinus; sss, sulcus for the sigmoid sinus; th, tympanohyal; tt, tuberculum tympani; ttf, tensor tympani fossa; ts, transverse sinus; tyc, tympanic crest; vf, vascular foramen; uf, unknown foramen; us, unknown sulcus; V3?, probable medial border of the foramen ovale for the V3 nerve.
Figure 7 in Evidence of early evolution of Australidelphia (Metatheria, Mammalia) in South America: phylogenetic relationships of the metatherians from the Late Palaeocene of Itaboraí (Brazil) based on teeth and petrosal bones
Figure 7. Timing of the earliest evolution of metatherians according to the hypotheses highlighted in the most parsimonious trees (Fig. 4). Data sources: minimal age of Sinodelphys (Swisher et al., 1999), age for the North American metatherians (Clemens, 1966), dating of the Mongolian taxon Deltatheridium (Dashzeveg et al., 2005), dating of the South American metatherians (de Muizon, 1994; Flynn & Swisher, 1995; Marshall et al., 1997); molecular estimate of divergence of marsupial ordinal clades (Nilsson et al., 2004; Beck, 2008; Meredith et al., 2008). Thick and grey strokes represent fossil species. Geological stages: Ab, Albian; Bm, Barremian; C, Coniacian; Ca, Campanian; Ce, Cenomanian; Eo, Eocene; H, Hauterivian; Ma, Maastrichtian; Pa, Palaeocene; S, Santonian; T, Turonian; V, Valanginian.
Figure 6 in Evidence of early evolution of Australidelphia (Metatheria, Mammalia) in South America: phylogenetic relationships of the metatherians from the Late Palaeocene of Itaboraí (Brazil) based on teeth and petrosal bones
Figure 6. Comparisons of the morphometric and phylogenetic assessments as regards the possible assignment of petrosal types to dental-based taxa from Itaboraí. Scale bars = 2 mm.
Figure 5 in Evidence of early evolution of Australidelphia (Metatheria, Mammalia) in South America: phylogenetic relationships of the metatherians from the Late Palaeocene of Itaboraí (Brazil) based on teeth and petrosal bones
Figure 5. Molar area vs. promontorium area for extant and fossil metatherians with associated petrosal and teeth remains. A, M2 area vs. promontorium area; B, m2 area vs. promontorium area; C, M3 area vs. promontorium area; D, m3 area vs. promontorium area. Open square, Didelphis marsupialis, closed square; Didelphis aurita; grey square, Didelphis albiventris; open circle, Marmosa murina; closed circle, Philander opossum; grey circle, Metachirus nudicaudatus; cross, Caluromys philander; closed lozenge; Caenolestes fuliginosus; grey lozenge, Phacogale tapoatafa; open triangle, Pucadelphys andinus; closed triangle, Andinodelphys cochabambensis; grey triangle, Mayulestes ferox; line, Deltatheridium pretrituberculare. M2–3, second and third upper molars; m2–3, second and third lower molars.
Figure 3 in Evidence of early evolution of Australidelphia (Metatheria, Mammalia) in South America: phylogenetic relationships of the metatherians from the Late Palaeocene of Itaboraí (Brazil) based on teeth and petrosal bones
Figure 3. Right petrosal of MNRJ 6735-V (Type VIII) in ventral (A) and dorsal (B) views, with a reconstruction of the inner ear (A2). Abbreviations: aa, anterior ampulla; al, anterior lamina; asc, anterior semicircular canal; av, aqueductus vestibuli; cc, crus commune; cocd, cochlear duct; cp, crista parotica; cr, crista petrosa; ctpp, caudal tympanic process of petrosal; er, epitympanic recess; fai, foramen acousticum inferius; fas, foramen acousticum superius; fc, fenestra cochleae; fi, fossa incudis; fn, facial nerve; fs, facial sulcus; fsa, fossa subarcuata; fv, fenestra vestibuli; gg, location of the subjacent geniculate ganglion; gpn, greater petrosal nerve; hF, hiatus Fallopii; iam, internal auditory meatus; ips, inferior petrosal sinus; la, lateral ampulla; lapc, lateral aperture of the prootic canal; lhv, lateral head vein; lsc, lateral semicircular canal; lw, lateral wall of epitympanic recess (tuberculum tympani); pa, posterior ampulla; pcv, prootic canal vein; pfc, prefacial commissure; pr, promontorium; ps, prootic sinus; psc, posterior semicircular canal; sff, secondary facial foramen; sips, sulcus for the inferior petrosal sinus; smn, stylomastoid notch; spev, sphenoparietal emissary vein; sps, sulcus for the prootic sinus; tt, tuberculum tympani.
Figure 2 in Evidence of early evolution of Australidelphia (Metatheria, Mammalia) in South America: phylogenetic relationships of the metatherians from the Late Palaeocene of Itaboraí (Brazil) based on teeth and petrosal bones
Figure 2. Right petrosal of MNRJ 6737-V (Type VII) in ventral (A) and dorsal (B) views. Abbreviations: aa, anterior ampulla; ac, aqueductus cochleae; al, anterior lamina; cp, crista parotica; cr, crista petrosa; ctpp, caudal tympanic process of petrosal; er, epitympanic recess; fai, foramen acousticum inferius; fas, foramen acousticum superius; fc, fenestra cochleae; fi, fossa incudis; fn, facial nerve; fs, facial sulcus; fsa, fossa subarcuata; fv, fenestra vestibuli; gg, location of the subjacent geniculate ganglion; gpn, greater petrosal nerve; hF, hiatus Fallopii; iam, internal auditory meatus; ica, internal carotid artery; ips, inferior petrosal sinus; la, lateral ampulla; lapc, lateral aperture of the prootic canal; lhv, lateral head vein; lw, lateral wall of epitympanic recess (tuberculum tympani); me, mastoid exposure; mp, mastoid tympanic process; pcv, prootic canal vein; pfc, prefacial commissure; pr, promontorium; ps, prootic sinus; rtpp, rostral tympanic process of petrosal; sff, secondary facial foramen; sica, sulcus for the internal carotid artery; sips, sulcus for the inferior petrosal sinus; smn, stylomastoid notch; spev, sphenoparietal emissary vein; sps, sulcus for the prootic sinus; th, tympanohyal; vf, vascular foramen; V3?, probable medial border of the foramen ovale for the V3 nerve.
FIGURE 4 in Transfer of the monospecific genus Nienburgella (Delesseriaceae, Rhodophyta) to Phycodrys, based on morphological and molecular evidence
FIGURE 4. Phycodrys radicosa (Okamura) Yamada & Inagaki from Korean coast. Vegetative morphology. A–E. Habits of female gametophyte (A, JN13102600045), tetrasprophyte (B, JN15012100001), and vegetative thalli (C, JN14091000006; D, JN14091000001; E, JN14091000003). F. Basal part of thallus. G. Multicellular rhizoids (arrowheads) along the margins of lower part of blade. H–I. Surface views of middle (H) and upper (H) parts of blade. J. Cortical cells with discoid chloroplasts. K–M. Cross-sections through lower (K), middle (L), and interveinal (M, arrow) portions of blade. N–O. Cells arrangement of blade apex with growing pattern (numbers: orders of cell rows, i: cells produced by intercalary cell division). Scale bars: C–E = 2 cm; A, B = 1 cm; F = 3 mm; I = 2 mm; H = 300 µm; G = 200 µm; K–M = 100 µm; J, N = 50 µm.
FIGURE 5 in Transfer of the monospecific genus Nienburgella (Delesseriaceae, Rhodophyta) to Phycodrys, based on morphological and molecular evidence
FIGURE 5. Phycodrys radicosa (Okamura) Yamada & Inagaki from Korean coast. Female (A–M) and tetrasporic (O–P) reproductive structures. A. Apex of marginal proliferation with procarps (arrowheads). B–G. Development process of immature procarp (cb1–3: cell numbers of carpogonial branch; cbi: carpogonial branch initial; cc: central cell; sc: supporting cell; st1: first sterile-cell group; st1i: first sterile-cell group initial; st2i: second sterile-cell group initial). H–I. Inferior (H) and superior (I) surface views of same point of mature procarp (cp: carpogonium; st2: second sterile-cell group; tr: trichogyne). J–K. Inferior (J) and superior (K) surface views of same point of post-fertilized stage (au: auxiliary cell; cbs: cells in carpogonial branch). L. Cross-section through an immature cystocarp (fu: fusion cell; gi: gonimoblast initial). M. Cross-section through a mature cystocarp. N–O. Surface views of tetrasporangial sori (t: tetrasporangia; ts: tetrasporangial sori). P. Cross-section through a tetrasporangium (ti: tetrasporangial initial). Scale bars: N = 1 mm; M, O = 100 µm; A, L, P = 50 µm; B–20 µm.
FIGURE 2 in Transfer of the monospecific genus Nienburgella (Delesseriaceae, Rhodophyta) to Phycodrys, based on morphological and molecular evidence
FIGURE 2. Nienburgella angusta (A.D. Zinova) Perestenko from the eastern coast of South Korea. Vegetative morphology. A–B Habits of tetrasporophyte (A, JN13102600046) and female gametophyte (B, JN13102600045). C. Multi-cellular rhizoids (arrowheads) along the margins of lower part of thallus. D. Surface view of middle part of main branch showing marginal rhizoids (arrowheads) and proliferation. E. Cortical cells with discoid chloroplasts. F–H. Cross-sections through apical (F), middle (G), and lower (H) part of blade. I–J. Cells arrangement of young blade with apical growing pattern (numbers: orders of cell rows, i: cells produced by intercalary cell division). Scale bars: A, B = 1 cm; C, D = 200 µm; G, H = 40 µm; E, F, I = 20 µm.
FIGURE 3 in Transfer of the monospecific genus Nienburgella (Delesseriaceae, Rhodophyta) to Phycodrys, based on morphological and molecular evidence
FIGURE 3. Nienburgella angusta (A.D. Zinova) Perestenko from the eastern coast of South Korea. Female (A–N) and tetrasporic (O–Q) reproductive structures. A–G. Development process of immature procarp (cb1–3: cell numbers of carpogonial branch; cbi: carpogonial branch initial; cbs: cells in carpogonial branch; cp: carpogonium; sc: supporting cell; st1: first sterile-cell group; st1i: first sterile-cell group initial; st2i: second sterile-cell group initial; tr: trichogyne). H. Mature procarp (st2: second sterile-cell group). I–J. Superior (I) and inferior (J) surface views of same point of post-fertilized stage (au: auxiliary cell). K–L. Cross-section through an immature cystocarp (fu: fusion cell; g: gonimoblast cell; gi: gonimoblast initial). M. Cross-section through a mature cystocarp (ca: caposporangia). N. Surface view of mature cystocarp (cs). O–P. Surface views of tetrasporangial sori (t: tetrasporangia; ts: tetrasporangial sori). Q. Cross-section through a tetrasporangium (ti: tetrasporangial initial). Scale bars: N, O = 2 mm; P = 500 µm; M, Q = 200 µm; K, L = 50 µm; A–J = 30 µm.
Supplementary material 1 from: Duan L, Han L-N, Sirichamorn Y, Wen J, Compton JA, Deng S-W, Arslan E, Ertuğrul K, Schrire B, Chen H-F (2021) Proposal to recognise the tribes Adinobotryeae and Glycyrrhizeae (Leguminosae subfamily Papilionoideae) based on chloroplast phylogenomic evidence. PhytoKeys 181: 65-77. https://doi.org/10.3897/phytokeys.181.71259
Voucher information, characters of chloroplast (cp) genomes and GenBank BioSample accession of genome skimming raw reads in this study
Supplementary material 2 from: Duan L, Han L-N, Sirichamorn Y, Wen J, Compton JA, Deng S-W, Arslan E, Ertuğrul K, Schrire B, Chen H-F (2021) Proposal to recognise the tribes Adinobotryeae and Glycyrrhizeae (Leguminosae subfamily Papilionoideae) based on chloroplast phylogenomic evidence. PhytoKeys 181: 65-77. https://doi.org/10.3897/phytokeys.181.71259
Chloroplast protein coding sequences (cpCDSs) and their corresponding substitution models generated from PartitionFinder 2
Dataset from: A pragmatic benchmarking study of an evidence-based personalized approach in 1938 adolescents with high-risk idiopathic scoliosis
<p>Dataset from a still non published study titled "A pragmatic benchmarking study of an evidence-based personalized approach in 1938 adolescents with high-risk idiopathic scoliosis"</p>
A reassessment of the little-known Amazonian fern Diplazium praestans based on molecular and morphological evidence
<p><b>Family- and genus-level circumscription of ferns in the suborder Aspleniineae (eupolypods II) has long been controversial, due in part to confusion about the relationship among the families Aspleniaceae and Athyriaceae. Recent studies have demonstrated that character states traditionally used to infer a close relationship between these two families are either symplesiomorphic or homoplastic, and re-examination of numerous taxa has led to the recircumscription of several clades, and the description of several new families and genera. In light of these findings, we re-evaluated the taxonomic affinities of Diplazium praestans, a little-known fern from western Amazonia that is morphologically disparate to the remainder of Neotropical Diplazium. Using sequence data from three chloroplast markers and analysis of eight morphological characters, we demonstrate that Diplazium praestans was erroneously placed in that genus and instead is a Hymenasplenium. We place it in a phylogenetic context, reassess its morphology in light of our findings, evaluate its conservation status under IUCN criteria, and provide a new combination: Hymenasplenium praestans. We also provide an updated key to the Neotropical species of Hymenasplenium and discuss unresolved taxonomic problems in the genus.</b></p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.