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1,076 results for “Metabarcoding”
Supplementary material 15 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Characteristics of each of the metagenomes found and their comparison with available genomes
Supplementary material 4 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Pathogens and endosymbionts present in each tick
Supplementary material 16 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Gene quantity analysis by COG clusters in MAGs, available genomes, and C. burnetii
Supplementary material 8 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy at the genus level within the domains of Bacteria and Archaea
Supplementary material 14 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Relative abundance by sample of resistence marker
Supplementary material 13 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Relative abundance by sample of virulence factors
Supplementary material 2 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Visual representation illustrating the methods utilized in the analysis discussed in the article
Supplementary material 11 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy of endosymbionts and pathogens
Supplementary material 6 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Metadata and metagenomic information of collected samples
Supplementary material 9 from: Paez-Triana L, Herrera G, Vega L, Garcia-Corredor D, Pulido Medellín MO, Paniz-Mondolfi A, Muñoz M, Ramírez JD (2023) Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia. Metabarcoding and Metagenomics 7: e109085. https://doi.org/10.3897/mbmg.7.109085
Abundance of taxonomy at the Family level within the domains of Bacteria and Archaea
Supplementary material 4 from: Sickel W, Zizka V, Scherges A, Bourlat SJ, Dieker P (2023) Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: e112290. https://doi.org/10.3897/mbmg.7.112290
Evaluation of methodological approaches
Supplementary material 2 from: Sickel W, Zizka V, Scherges A, Bourlat SJ, Dieker P (2023) Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: e112290. https://doi.org/10.3897/mbmg.7.112290
Literature collection
Supplementary material 1 from: Sickel W, Zizka V, Scherges A, Bourlat SJ, Dieker P (2023) Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: e112290. https://doi.org/10.3897/mbmg.7.112290
Background information
Supplementary material 3 from: Sickel W, Zizka V, Scherges A, Bourlat SJ, Dieker P (2023) Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: e112290. https://doi.org/10.3897/mbmg.7.112290
Categories assessed in the literature review
Supplementary material 1 from: Schimani K, Abarca N, Skibbe O, Mohamad H, Jahn R, Kusber W-H, Campana GL, Zimmermann J (2023) Exploring benthic diatom diversity in the West Antarctic Peninsula: insights from a morphological and molecular approach. Metabarcoding and Metagenomics 7: e110194. https://doi.org/10.3897/mbmg.7.110194
Statistic results
Supplementary material 2 from: Schallenberg LA, Thomson-Laing G, Kelly D, Pearman JK, Howarth JD, Vandergoes MJ, Puddick J, Fitzsimons S, Rees A, Wood SA (2023) Insights into the ecological impact of trout introduction in an oligotrophic lake using sedimentary environmental DNA. Metabarcoding and Metagenomics 7: e111467. https://doi.org/10.3897/mbmg.7.111467
Supplementary data 2
Supplementary material 1 from: Schallenberg LA, Thomson-Laing G, Kelly D, Pearman JK, Howarth JD, Vandergoes MJ, Puddick J, Fitzsimons S, Rees A, Wood SA (2023) Insights into the ecological impact of trout introduction in an oligotrophic lake using sedimentary environmental DNA. Metabarcoding and Metagenomics 7: e111467. https://doi.org/10.3897/mbmg.7.111467
Supplementary data 1
Supplementary material 1 from: Ács É, Bíró T, Boros E, Dobosy P, Duleba M, Földi A, Kiss KT, Levkov Z, Orgoványi P, Szén OP, Trábert Z, Vadkerti E, Grigorszky I (2023) Halamphora taxa in Hungarian soda pans and shallow soda lakes detected via metabarcoding and microscopic analyses. Metabarcoding and Metagenomics 7: e111679. https://doi.org/10.3897/mbmg.7.111679
Relative abundances of Halamphora species based on microscopy and metabarcodin
Supplementary material 3 from: Ács É, Bíró T, Boros E, Dobosy P, Duleba M, Földi A, Kiss KT, Levkov Z, Orgoványi P, Szén OP, Trábert Z, Vadkerti E, Grigorszky I (2023) Halamphora taxa in Hungarian soda pans and shallow soda lakes detected via metabarcoding and microscopic analyses. Metabarcoding and Metagenomics 7: e111679. https://doi.org/10.3897/mbmg.7.111679
Supplementary Alignment 1
Supplementary material 4 from: Ács É, Bíró T, Boros E, Dobosy P, Duleba M, Földi A, Kiss KT, Levkov Z, Orgoványi P, Szén OP, Trábert Z, Vadkerti E, Grigorszky I (2023) Halamphora taxa in Hungarian soda pans and shallow soda lakes detected via metabarcoding and microscopic analyses. Metabarcoding and Metagenomics 7: e111679. https://doi.org/10.3897/mbmg.7.111679
Supplementary Alignment 2
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.