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Figure 3 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 3 Evolutionary rate of each PCG among yponomeutoid mitogenomes. Ka, non-synonymous substitution; Ks, synonymous substitution.
Figure 2 from: Yang M, Hu B, Zhou L, Liu X, Shi Y, Song L, Wei Y, Cao J (2019) First mitochondrial genome from Yponomeutidae (Lepidoptera, Yponomeutoidea) and the phylogenetic analysis for Lepidoptera. ZooKeys 879: 137-156. https://doi.org/10.3897/zookeys.879.35101
Figure 2 Relative synonymous codon usages (RSCU) in PCGs of Yponomeuta montanatus and other published yponomeutoid mitogenomes. Codon families are indicated below the X-axis.
Figure 2 in The first complete mitochondrial genomes of three dobsonfly species (Megaloptera: Corydalidae) from Pakistan with phylogenetic implications
Figure 2 Phylogenetic relationships among the selected species of Megaloptera based on mitogenomic data. BI tree for Megaloptera based on concatenated 13 PCGs with branch supports shown as Bayesian posterior probabilities. The colors represent different genera.
Figure 1 in The first complete mitochondrial genomes of three dobsonfly species (Megaloptera: Corydalidae) from Pakistan with phylogenetic implications
Figure 1 The maps of the complete mitochondrial genome of three Pakistani dobsonfly species. A. Protohermes walkeri; B. Protohermes motuoensis; C. Nevromus intimus.
Fig. 2 in Complete mitochondrial genomes of Chionomys roberti and Chionomys nivalis (Mammalia: Rodentia) from Turkey: Insight into their phylogenetic position within Arvicolinae
Fig. 2 Putative secondary structure of tRNAs for Chionomys haplotypes
Figure 2 in Complete mitochondrial genome of an Arctic Collared Lemming subspecies endemic to the Novaya Zemlya Archipelago, Russia
Figure 2. Gene map of Novaya Zemlya Collared Lemming Dicrostonyx torquatus ungulatus (von Baer, 1841) mitochondrial genome [topotype No. RMBH Lem16; GenBank accession No. MW401673]. Genes positioned inside the circle are encoded on the heavy strand, and genes outside the circle are encoded on the light strand. Color codes: Small and large ribosomal RNAs (red), transfer RNAs (purple), control region and OriL-strand (yellow), and PCGs genes (green).
Data from "Mitochondrial genomes of the European sardine (Sardina pilchardus) reveal Pliocene diversification, extensive gene flow and pervasive purifying selection"
<p>INFORMATION ON THE FILES PROVIDED</p> <p>File:<br>European_sardine_whole_mitogenome_139.fasta</p> <p>Content:<br>Alignment of 139 European sardine whole mitogenome sequences</p> <p>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::</p> <p>File:<br>European_sardine_13_genes_139_IQTree.nex</p> <p>Content:<br>Alignment of 13 mitochondrial genes from 139 European sardine samples </p> <p>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::</p> <p>File:<br>European_sardine_13_genes_139_Partitions.nex</p> <p>Content:<br>Partition file for IQtree analysis of Sardina_13_genes_139_IQTree.nex</p> <p>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::</p> <p>File:<br>European_sardine_12_genes_63.fasta</p> <p>Content:<br>Alignment of 12 mitochondrial genes from 60 European sardine and 3 Sardinops samples</p> <p>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::</p> <p>File:<br>BEAST_infile_calibration.xml </p> <p>Content:<br>Input file for the BEAST analysis of European_sardine_12_genes_63.fasta</p>
Figure 1 in The complete mitochondrial genome of the leopard shark Triakis semifasciata (Triakidae)
Figure 1. Circular map of the mitochondrial genome of the leopard shark Triakis semifasciata.
Table 2 in The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae)
<p><b>Table 2.</b> Selective pressure analysis in the protein-coding genes (PCGs) of <i>Ocyurus chrysurus</i>. Ka/Ks values were calculated using the G-MYN model.</p><table><tbody><tr><th>Genes</th><th>Ka</th><th>Ks</th><th>Ka/Ks</th><th><i>p</i> values</th></tr></tbody><tbody><tr><th><i>atp8</i></th><td>0</td><td>0.447011</td><td>0</td><td>NA</td></tr><tr><th><i>atp6</i></th><td>0.008628</td><td>0.643218</td><td>0.013415</td><td>1.92E-38</td></tr><tr><th><i>cox1</i></th><td>0.001807</td><td>0.576714</td><td>0.003133</td><td>1.22E-94</td></tr><tr><th><i>cox2</i></th><td>0</td><td>0.63547</td><td>0</td><td>NA</td></tr><tr><th><i>cox3</i></th><td>0.00169</td><td>0.592519</td><td>0.002852</td><td>NA</td></tr><tr><th><i>nad1</i></th><td>0.001421</td><td>0.887008</td><td>0.001602</td><td>2.80E-75</td></tr><tr><th><i>nad2</i></th><td>0.01025</td><td>0.350753</td><td>0.010875</td><td>4.73E-34</td></tr><tr><th><i>nad3</i></th><td>0.008549</td><td>0.896393</td><td>0.009537</td><td>2.55E-25</td></tr><tr><th><i>nad4</i></th><td>0.008153</td><td>0.425769</td><td>0.01915</td><td>5.00E-57</td></tr><tr><th><i>nad4l</i></th><td>3.35E-12</td><td>0.910699</td><td>0.00</td><td>0</td></tr><tr><th><i>nad5</i></th><td>0.010358</td><td>3.18101</td><td>0.010358</td><td>6.67E-150</td></tr><tr><th><i>nad6</i></th><td>0.00607</td><td>0.370163</td><td>0.008141</td><td>8.27E-19</td></tr><tr><th><i>cob</i></th><td>0.825769</td><td>0.0012</td><td>0.001153</td><td>2.00E-30</td></tr></tbody></table><p>Ka: number of nonsynonymous substitutions per nonsynonymous site; Ks: number of synonymous substitutions per synonymous site; Ka/Ks: ratio based on pairwise comparisons</p>
Table 1 in Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
<p><b>Table 1.</b> Arrangement and annotation of the mitochondrial genome of Cubaris murina.</p><table><tbody><tr><th></th><th></th><th></th><th></th><th></th><th>Length</th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th>Name</th><td>Type</td><td>Start</td><td>Stop</td><td>Strand</td><td>(bp)</td><td>Start</td><td>Stop</td><td>Inter-genic space</td><td>Overlap</td></tr><tr><th>Cox1</th><td>Coding</td><td>1</td><td>1536</td><td>+</td><td>1536</td><td>ATG</td><td>TAA</td><td>1</td><td></td></tr><tr><th>trnL2(tta)</th><td>tRNA</td><td>1538</td><td>1598</td><td>+</td><td>61</td><td></td><td></td><td>48</td><td></td></tr><tr><th>Cox2</th><td>Coding</td><td>1647</td><td>2282</td><td>+</td><td>636</td><td>ATA</td><td>TAG</td><td></td><td>2</td></tr><tr><th>trnK(aaa)</th><td>tRNA</td><td>2281</td><td>2336</td><td>+</td><td>56</td><td></td><td></td><td></td><td>8</td></tr><tr><th>trnD(gac)</th><td>tRNA</td><td>2329</td><td>2403</td><td>+</td><td>75</td><td></td><td></td><td></td><td>17</td></tr><tr><th>atp8</th><td>Coding</td><td>2387</td><td>2533</td><td>+</td><td>147</td><td>ATA</td><td>TAA</td><td></td><td>4</td></tr><tr><th>atp6</th><td>Coding</td><td>2530</td><td>3192</td><td>+</td><td>663</td><td>ATA</td><td>TAA</td><td>2</td><td></td></tr><tr><th>Cox3</th><td>Coding</td><td>3195</td><td>3989</td><td>+</td><td>795</td><td>ATG</td><td>TAG</td><td></td><td>2</td></tr><tr><th>trnR(cga)</th><td>tRNA</td><td>3988</td><td>4055</td><td>+</td><td>68</td><td></td><td></td><td>55</td><td></td></tr><tr><th>nad3</th><td>Coding</td><td>4111</td><td>4407</td><td>+</td><td>297</td><td>ATA</td><td>TAA</td><td></td><td>9</td></tr><tr><th>trnA(gca)</th><td>tRNA</td><td>4399</td><td>4446</td><td>+</td><td>48</td><td></td><td></td><td></td><td>8</td></tr><tr><th>nad1 CR putative</th><td>Coding</td><td>4439 5219</td><td>5218 5360</td><td>−</td><td>780 142</td><td>ATG</td><td>TAG</td><td></td><td>14</td></tr><tr><th>NCR1</th><td>tRNA</td><td>5361</td><td>5429</td><td>+</td><td>69</td><td></td><td></td><td></td><td>17</td></tr><tr><th>rrnS</th><td>rRNA</td><td>5413</td><td>6139</td><td>+</td><td>727</td><td></td><td></td><td>48</td><td></td></tr><tr><th>trnW(tga)</th><td>tRNA</td><td>6188</td><td>6244</td><td>+</td><td>57</td><td></td><td></td><td></td><td>7</td></tr><tr><th>trnS1(aga)</th><td>tRNA</td><td>6238</td><td>6296</td><td>−</td><td>59</td><td></td><td></td><td></td><td></td></tr><tr><th>NCR2</th><td></td><td>6297</td><td>6666</td><td></td><td>370</td><td></td><td></td><td></td><td></td></tr><tr><th>trnL1(cta)</th><td>tRNA</td><td>6667</td><td>6731</td><td>−</td><td>65</td><td></td><td></td><td>29</td><td></td></tr><tr><th>cob</th><td>Coding</td><td>6759</td><td>7907</td><td>−</td><td>1,149</td><td>ATA</td><td>TAG</td><td>38</td><td></td></tr><tr><th>trnT(aca)</th><td>tRNA</td><td>7946</td><td>8017</td><td>−</td><td>72</td><td></td><td></td><td>29</td><td></td></tr><tr><th>nad5</th><td>Coding</td><td>8047</td><td>9648</td><td>+</td><td>1,602</td><td>ATG</td><td>TAG</td><td></td><td>3</td></tr><tr><th>trnF(ttc)</th><td>tRNA</td><td>9646</td><td>9707</td><td>+</td><td>62</td><td></td><td></td><td></td><td>15</td></tr><tr><th>trnH(cac)</th><td>tRNA</td><td>9693</td><td>9758</td><td>−</td><td>66</td><td></td><td></td><td></td><td>23</td></tr><tr><th>nad4</th><td>Coding</td><td>9736</td><td>11,082</td><td>−</td><td>1,312</td><td>ATA</td><td>TAA</td><td>13</td><td></td></tr><tr><th>nad4L</th><td>Coding</td><td>11,096</td><td>11,374</td><td>−</td><td>279</td><td>ATA</td><td>TAA</td><td></td><td>13</td></tr><tr><th>trnP(cca)</th><td>tRNA</td><td>11,362</td><td>11,422</td><td>−</td><td>61</td><td></td><td></td><td>25</td><td></td></tr><tr><th>nad6</th><td>Coding</td><td>11,448</td><td>11,903</td><td>+</td><td>456</td><td>ATA</td><td>TAG</td><td></td><td>2</td></tr><tr><th>trnS2(tca)</th><td>tRNA</td><td>11,902</td><td>11,962</td><td>+</td><td>61</td><td></td><td></td><td>17</td><td></td></tr><tr><th>rrnL</th><td>rRNA</td><td>11,980</td><td>12,549</td><td>−</td><td>570</td><td></td><td></td><td></td><td></td></tr><tr><th>NCR3</th><td></td><td>12,550</td><td>12,753</td><td></td><td>204</td><td></td><td></td><td></td><td></td></tr><tr><th>trnE(gaa)</th><td>tRNA</td><td>12,754</td><td>12,812</td><td>−</td><td>59</td><td></td><td></td><td></td><td></td></tr><tr><th>NCR4</th><td></td><td>12,813</td><td>12,950</td><td></td><td>138</td><td></td><td></td><td></td><td></td></tr><tr><th>trnV(gta)</th><td>tRNA</td><td>12,951</td><td>13,019</td><td>−</td><td>69</td><td></td><td></td><td></td><td>5</td></tr><tr><th>trnQ(caa)</th><td>tRNA</td><td>13,015</td><td>13,077</td><td>−</td><td>63</td><td></td><td></td><td></td><td>6</td></tr><tr><th>trnM(atg)</th><td>tRNA</td><td>13,072</td><td>13,141</td><td>+</td><td>70</td><td></td><td></td><td>25</td><td></td></tr><tr><th>nad2</th><td>Coding</td><td>13,167</td><td>14,123</td><td>+</td><td>978</td><td>ATA</td><td>TAG</td><td></td><td>15</td></tr><tr><th>trnC(tgc)</th><td>tRNA</td><td>14,109</td><td>14,158</td><td>−</td><td>50</td><td></td><td></td><td></td><td></td></tr><tr><th>trnY(tac)</th><td>tRNA</td><td>14,159</td><td>14,205</td><td>−</td><td>47</td><td></td><td></td><td>7</td><td></td></tr></tbody></table>
Table 2 in Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
<p><b>Table 2.</b> Base composition (%) of nucleotide, AT content, and AT- and GC-skew of the mitochondrial genome of <i>Cubaris murina.</i> Values in bold indicate positive AT-skew.</p><table><tbody><tr><th></th><th></th><th></th><th>Base composition (%)</th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th>Total</th><td></td><td>A</td><td>C</td><td>G</td><td>T</td><td>%AT</td><td>AT skew</td><td>GC skew</td></tr><tr><th>14,212 bp</th><td>28.90%</td><td>15.80%</td><td>23.40%</td><td>31.90%</td><td>60.80%</td><td>−0.049</td><td>0.194</td></tr><tr><th></th><td></td><td></td><td>Base composition (%)</td><td></td><td></td><td></td><td></td></tr><tr><th>Gene Strand</th><td>A</td><td>C</td><td>G</td><td>T</td><td>%AT</td><td>AT skew</td><td>GC skew</td></tr><tr><th><i>cox1</i></th><td>(+)</td><td>22.4%</td><td>18.6%</td><td>24.2%</td><td>34.8%</td><td>57.2%</td><td>−0.217</td><td>0.131</td></tr><tr><th><i>cox2</i></th><td>(+)</td><td>20.6%</td><td>21.7%</td><td>27.7%</td><td>30.0%</td><td>50.6%</td><td>−0.186</td><td>0.121</td></tr><tr><th><i>atp8</i></th><td>(+)</td><td>21.1%</td><td>15.0%</td><td>34.7%</td><td>29.3%</td><td>50.4%</td><td>−0.163</td><td>0.396</td></tr><tr><th><i>atp6</i></th><td>(+)</td><td>20.4%</td><td>19.8%</td><td>29.1%</td><td>30.8%</td><td>51.2%</td><td>−0.203</td><td>0.190</td></tr><tr><th><i>cox3</i></th><td>(+)</td><td>17.2%</td><td>23.6%</td><td>28.6%</td><td>30.6%</td><td>47.8%</td><td>−0.280</td><td>0.096</td></tr><tr><th><i>nad3</i></th><td>(+)</td><td>20.2%</td><td>16.2%</td><td>32.3%</td><td>31.3%</td><td>51.5%</td><td>−0.216</td><td>0.332</td></tr><tr><th><i>nad1</i></th><td>(−)</td><td>31.7%</td><td>22.2%</td><td>27.6%</td><td>18.6%</td><td>50.3%</td><td><b>0.260</b></td><td>0.108</td></tr><tr><th><i>NCR1</i></th><td></td><td>28.9%</td><td>27.5%</td><td>19.7%</td><td>23.9%</td><td>52.8%</td><td>0.095</td><td>−0.165</td></tr><tr><th><i>NCR2</i></th><td></td><td>27.0%</td><td>22.2%</td><td>18.1%</td><td>32.7%</td><td>59.7%</td><td>−0.095</td><td>−0.102</td></tr><tr><th><i>cob</i></th><td>(−)</td><td>36.0%</td><td>12.0%</td><td>23.5%</td><td>28.5%</td><td>64.5%</td><td><b>0.116</b></td><td>0.324</td></tr><tr><th><i>nad5</i></th><td>(+)</td><td>28.5%</td><td>10.5%</td><td>21.7%</td><td>39.3%</td><td>67.8%</td><td>−0.159</td><td>0.348</td></tr><tr><th><i>nad4</i></th><td>(−)</td><td>38.4%</td><td>11.9%</td><td>22.8%</td><td>26.9%</td><td>65.3%</td><td><b>0.176</b></td><td>0.314</td></tr><tr><th><i>nad4L</i></th><td>(−)</td><td>41.9%</td><td>12.2%</td><td>17.6%</td><td>28.3%</td><td>70.2%</td><td><b>0.194</b></td><td>0.181</td></tr><tr><th><i>nad6</i></th><td>(+)</td><td>25.7%</td><td>10.5%</td><td>17.8%</td><td>46.1%</td><td>71.8%</td><td>−0.284</td><td>0.258</td></tr><tr><th><i>NCR3</i></th><td></td><td>36.8%</td><td>9.8%</td><td>19.1%</td><td>34.3%</td><td>71.1%</td><td>0.035</td><td>0.322</td></tr><tr><th><i>NCR4</i></th><td></td><td>35.5%</td><td>13.0%</td><td>15.2%</td><td>36.2%</td><td>71.7%</td><td>−0.010</td><td>0.078</td></tr><tr><th><i>nad2</i></th><td>(+)</td><td>28.9%</td><td>12.4%</td><td>22.6%</td><td>36.1%</td><td>65.0%</td><td>−0.111</td><td>0.291</td></tr></tbody></table>
Table 1 in The complete mitochondrial genome of the leopard shark Triakis semifasciata (Triakidae)
<p><b>Table 1.</b> Mitochondrial genome of <i>Triakis semifasciata</i>: arrangement and annotation.</p><table><tbody><tr><th>Name</th><th>Type</th><th>Start</th><th>Stop</th><th>Strand</th><th>Length (bp)</th><th>Start</th><th>Stop</th><th>Anticodon</th><th>Continuity</th></tr></tbody><tbody><tr><th>trnF(gaa)</th><td></td><td>1</td><td>69</td><td>(+)</td><td>69</td><td></td><td></td><td></td><td>1</td></tr><tr><th>rrnS</th><td></td><td>71</td><td>1023</td><td>(+)</td><td>953</td><td></td><td></td><td></td><td>−3</td></tr><tr><th>trnV(tac)</th><td></td><td>1021</td><td>1092</td><td>(+)</td><td>72</td><td></td><td></td><td></td><td>23</td></tr><tr><th>rrnL</th><td></td><td>1116</td><td>2763</td><td>(+)</td><td>1648</td><td></td><td></td><td></td><td>−1</td></tr><tr><th>trnL2(taa)</th><td></td><td>2763</td><td>2837</td><td>(+)</td><td>75</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad1</i></th><td></td><td>2838</td><td>3812</td><td>(+)</td><td>975</td><td>ATG</td><td>TAA</td><td></td><td>0</td></tr><tr><th>trnl(gat)</th><td></td><td>3813</td><td>3882</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnQ(ttg)</th><td></td><td>3884</td><td>3955</td><td>(-)</td><td>72</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnM(cat)</th><td></td><td>3956</td><td>4024</td><td>(+)</td><td>69</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad2</i></th><td></td><td>4025</td><td>5071</td><td>(+)</td><td>1047</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnW(tca)</th><td></td><td>5070</td><td>5140</td><td>(+)</td><td>71</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnN(tgc)</th><td></td><td>5142</td><td>5210</td><td>(-)</td><td>69</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnN(gtt)</th><td></td><td>5211</td><td>5283</td><td>(-)</td><td>73</td><td></td><td></td><td></td><td>6</td></tr><tr><th>OL</th><td></td><td>5290</td><td>5319</td><td>(+)</td><td>30</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnC(gca)</th><td></td><td>5321</td><td>5389</td><td>(-)</td><td>69</td><td></td><td></td><td></td><td>1</td></tr><tr><th>trnY(gta)</th><td></td><td>5391</td><td>5460</td><td>(-)</td><td>70</td><td></td><td></td><td></td><td>1</td></tr><tr><th><i>cox1</i></th><td></td><td>5462</td><td>7018</td><td>(+)</td><td>1557</td><td>GTG</td><td>TAA</td><td></td><td>0</td></tr><tr><th>trnS2(tga)</th><td></td><td>7019</td><td>7089</td><td>(-)</td><td>71</td><td></td><td></td><td></td><td>3</td></tr><tr><th>trnD(gtc)</th><td></td><td>7093</td><td>7162</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>7</td></tr><tr><th><i>cox2</i></th><td></td><td>7170</td><td>7860</td><td>(+)</td><td>691</td><td>ATG</td><td>T(AA)</td><td></td><td>0</td></tr><tr><th>trnK(ttt)</th><td></td><td>7861</td><td>7934</td><td>(+)</td><td>74</td><td></td><td></td><td></td><td>1</td></tr><tr><th><i>atp8</i></th><td></td><td>7936</td><td>8103</td><td>(+)</td><td>168</td><td>ATG</td><td>TAA</td><td></td><td>−10</td></tr><tr><th><i>atp6</i></th><td></td><td>8094</td><td>8777</td><td>(+)</td><td>684</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th>cox3</th><td></td><td>8777</td><td>9562</td><td>(+)</td><td>786</td><td>ATG</td><td>TAA</td><td></td><td>2</td></tr><tr><th>trnG(tcc)</th><td></td><td>9565</td><td>9634</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad3</i></th><td></td><td>9635</td><td>9985</td><td>(+)</td><td>351</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnR(tcg)</th><td></td><td>9984</td><td>10,053</td><td>(+)</td><td>70</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad4l</i></th><td></td><td>10,054</td><td>10,350</td><td>(+)</td><td>297</td><td>ATG</td><td>TAA</td><td></td><td>−7</td></tr><tr><th><i>nad4</i></th><td></td><td>10,344</td><td>11,724</td><td>(+)</td><td>1381</td><td>ATG</td><td>T(AA)</td><td></td><td>0</td></tr><tr><th>trnH(gtg)</th><td></td><td>11,725</td><td>11,793</td><td>(+)</td><td>69</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnS1(gct)</th><td></td><td>11,794</td><td>11,860</td><td>(+)</td><td>67</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnL1(tag)</th><td></td><td>11,861</td><td>11,932</td><td>(+)</td><td>72</td><td></td><td></td><td></td><td>0</td></tr><tr><th><i>nad5</i></th><td></td><td>11,933</td><td>13,762</td><td>(+)</td><td>1830</td><td>ATG</td><td>TAA</td><td></td><td>−5</td></tr><tr><th><i>nad6</i></th><td></td><td>13,758</td><td>14,279</td><td>(-)</td><td>522</td><td>ATG</td><td>AGG</td><td></td><td>0</td></tr><tr><th>trnE(ttc)</th><td></td><td>14,280</td><td>14,349</td><td>(-)</td><td>70</td><td></td><td></td><td></td><td>2</td></tr><tr><th><i>cob</i></th><td></td><td>14,352</td><td>15,497</td><td>(+)</td><td>1146</td><td>ATG</td><td>TAG</td><td></td><td>−1</td></tr><tr><th>trnT(tgt)</th><td></td><td>15,497</td><td>15,568</td><td>(+)</td><td>72</td><td></td><td></td><td></td><td>2</td></tr><tr><th>trnP(tgg)</th><td></td><td>15,571</td><td>15,639</td><td>(-)</td><td>69</td><td></td><td></td><td></td><td>278</td></tr><tr><th>CR</th><td></td><td>15,640</td><td>16,613</td><td></td><td>974</td><td></td><td></td><td></td><td></td></tr><tr><th>OH</th><td></td><td>15,918</td><td>16,612</td><td>(+)</td><td>695</td><td></td><td></td><td></td><td></td></tr></tbody></table>
Table 1 in The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae)
<p><b>Table 1.</b> Mitochondrial genome of <i>Ocyurus chrysurus</i>. Arrangement and annotation.</p><table><tbody><tr><th>Name</th><th>Type</th><th>Start</th><th>Stop</th><th>Strand</th><th>Length (bp)</th><th>Start</th><th>Stop</th><th>Anticodon</th><th>Continuity</th></tr></tbody><tbody><tr><th>trnF</th><td>tRNA</td><td>1</td><td>68</td><td>+</td><td>68</td><td></td><td></td><td>GAA</td><td>0</td></tr><tr><th>rrnS</th><td>rRNA</td><td>69</td><td>1020</td><td>+</td><td>952</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnV</th><td>tRNA</td><td>1021</td><td>1092</td><td>+</td><td>72</td><td></td><td></td><td>TAC</td><td>46</td></tr><tr><th>rrnL</th><td>rRNA</td><td>1139</td><td>2790</td><td>+</td><td>1652</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnL2</th><td>tRNA</td><td>2791</td><td>2864</td><td>+</td><td>74</td><td></td><td></td><td>TAA</td><td>0</td></tr><tr><th><i>nad1</i></th><td>PCG</td><td>2865</td><td>3839</td><td>+</td><td>975</td><td>ATG</td><td>TAA</td><td></td><td>3</td></tr><tr><th>trnI</th><td>tRNA</td><td>3843</td><td>3912</td><td>+</td><td>70</td><td></td><td></td><td>GAT</td><td>−1</td></tr><tr><th>trnQ</th><td>tRNA</td><td>3912</td><td>3982</td><td>−</td><td>71</td><td></td><td></td><td>TTG</td><td>−1</td></tr><tr><th>trnM</th><td>tRNA</td><td>3982</td><td>4050</td><td>+</td><td>69</td><td></td><td></td><td>CAT</td><td>0</td></tr><tr><th><i>nad2</i></th><td>PCG</td><td>4051</td><td>5097</td><td>+</td><td>1047</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th>trnW</th><td>tRNA</td><td>5097</td><td>5168</td><td>+</td><td>72</td><td></td><td></td><td>TCA</td><td>0</td></tr><tr><th>trnA</th><td>tRNA</td><td>5169</td><td>5237</td><td>−</td><td>69</td><td></td><td></td><td>TGC</td><td>1</td></tr><tr><th>trnN</th><td>tRNA</td><td>5239</td><td>5311</td><td>−</td><td>73</td><td></td><td></td><td>GTT</td><td>2</td></tr><tr><th>OL</th><td>PCG</td><td>5314</td><td>5352</td><td>+</td><td>39</td><td></td><td></td><td></td><td>−2</td></tr><tr><th>trnC</th><td>tRNA</td><td>5351</td><td>5417</td><td>−</td><td>67</td><td></td><td></td><td>GCA</td><td>0</td></tr><tr><th>trnY</th><td>tRNA</td><td>5418</td><td>5487</td><td>−</td><td>70</td><td></td><td></td><td>GTA</td><td>1</td></tr><tr><th><i>cox1</i></th><td>PCG</td><td>5489</td><td>7039</td><td>+</td><td>1551</td><td>GTG</td><td>TAA</td><td></td><td>2</td></tr><tr><th>trnS2</th><td>tRNA</td><td>7042</td><td>7112</td><td>−</td><td>71</td><td></td><td></td><td>TGA</td><td>3</td></tr><tr><th>trnD</th><td>tRNA</td><td>7116</td><td>7187</td><td>+</td><td>72</td><td></td><td></td><td>GTC</td><td>6</td></tr><tr><th><i>cox2</i></th><td>PCG</td><td>7194</td><td>7886</td><td>+</td><td>693</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnK</th><td>tRNA</td><td>7885</td><td>7959</td><td>+</td><td>75</td><td></td><td></td><td>TTT</td><td>1</td></tr><tr><th><i>atp8</i></th><td>PCG</td><td>7961</td><td>8128</td><td>+</td><td>168</td><td>ATG</td><td>TAA</td><td></td><td>−10</td></tr><tr><th><i>atp6</i></th><td>PCG</td><td>8119</td><td>8802</td><td>+</td><td>684</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th><i>cox3</i></th><td>PCG</td><td>8802</td><td>9587</td><td>+</td><td>786</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th>trnG</th><td>tRNA</td><td>9587</td><td>9658</td><td>+</td><td>72</td><td></td><td></td><td>TCC</td><td>0</td></tr><tr><th><i>nad3</i></th><td>PCG</td><td>9659</td><td>10,009</td><td>+</td><td>351</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnR</th><td>tRNA</td><td>10,008</td><td>10,076</td><td>+</td><td>69</td><td></td><td></td><td>TCG</td><td>0</td></tr><tr><th><i>nad4l</i></th><td>PCG</td><td>10,077</td><td>10,373</td><td>+</td><td>297</td><td>ATG</td><td>TAA</td><td></td><td>−7</td></tr><tr><th><i>nad4</i></th><td>PCG</td><td>10,367</td><td>11,747</td><td>+</td><td>1381</td><td>ATG</td><td>T</td><td></td><td>0</td></tr><tr><th>trnH</th><td>tRNA</td><td>11,748</td><td>11,816</td><td>+</td><td>69</td><td></td><td></td><td>GTG</td><td>0</td></tr><tr><th>trnS1</th><td>tRNA</td><td>11,817</td><td>11,884</td><td>+</td><td>68</td><td></td><td></td><td>GCT</td><td>4</td></tr><tr><th>trnL1</th><td>tRNA</td><td>11,889</td><td>11,961</td><td>+</td><td>73</td><td></td><td></td><td>TAG</td><td>0</td></tr><tr><th><i>nad5</i></th><td>PCG</td><td>11,962</td><td>13,800</td><td>+</td><td>1839</td><td>ATG</td><td>TAA</td><td></td><td>−4</td></tr><tr><th><i>nad6</i></th><td>PCG</td><td>13,797</td><td>14,318</td><td>−</td><td>522</td><td>ATG</td><td>TAG</td><td></td><td>0</td></tr><tr><th>trnE</th><td>tRNA</td><td>14,319</td><td>14,387</td><td>−</td><td>69</td><td></td><td></td><td>TTC</td><td>6</td></tr><tr><th><i>Cob</i></th><td>PCG</td><td>14,394</td><td>15,534</td><td>+</td><td>1141</td><td>ATG</td><td>T</td><td></td><td>0</td></tr><tr><th>trnT</th><td>tRNA</td><td>15,535</td><td>15,606</td><td>+</td><td>72</td><td></td><td></td><td>TGT</td><td>−1</td></tr><tr><th>trnP</th><td>tRNA</td><td>15,606</td><td>15,675</td><td>−</td><td>70</td><td></td><td></td><td>TGG</td><td>254</td></tr><tr><th>CR</th><td></td><td>15,675</td><td>16,502</td><td>+</td><td>827</td><td></td><td></td><td></td><td>51</td></tr></tbody></table>
Linked collectors and determiners for: Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini).
Natural history specimen data linked to collectors and determiners held within, "Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/97360f20-c368-4646-b2d0-865ae53e60da">https://bionomia.net/dataset/97360f20-c368-4646-b2d0-865ae53e60da</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/97360f20-c368-4646-b2d0-865ae53e60da">https://gbif.org/dataset/97360f20-c368-4646-b2d0-865ae53e60da</a>. Formatted as a Frictionless Data package.
Evolutionary rates are correlated between cockroach symbiont and mitochondrial genomes
<p>Bacterial endosymbionts evolve under strong host-driven selection. Factors influencing host evolution might affect symbionts in similar ways, potentially leading to correlations between the molecular evolutionary rates of hosts and symbionts. Although there is evidence of rate correlations between mitochondrial and nuclear genes, similar investigations of hosts and symbionts are lacking. Here we demonstrate a correlation in molecular rates between the genomes of an endosymbiont (<i>Blattabacterium cuenoti</i>) and the mitochondrial genomes of their hosts (cockroaches). We used partial genome data for multiple strains of <i>B. cuenoti</i>to compare phylogenetic relationships and evolutionary rates for 55 cockroach/symbiont pairs. The phylogenies inferred for <i>B. cuenoti </i>and the mitochondrial genomes of their hosts were largely congruent, as expected from their identical maternal and cytoplasmic mode of inheritance. We found a correlation between evolutionary rates of the two genomes, based on comparisons of root-to-tip distances and on comparisons of branch lengths of phylogenetically independent species pairs. Our results underscore the profound effects that long-term symbiosis can have on the biology of each symbiotic partner.</p>
Data from: The complete mitochondrial genome of Schoutedenia ralumensis Rübsaamen, 1905 (Hemiptera: Aphididae: Greenideinae)
<p>We sequenced the complete mitochondrial genome of <i>Schoutedenia ralumensis</i>. The mitogenome is 16,051 bp long with an A+T content of 84.5%, including 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, a control region and an aphid-specific repeat region located between <i>trnE</i> and <i>trnF</i>. All protein-coding genes are initiated by ATN and terminated with TAA or TAG except for <i>cox1</i> and <i>nad5</i>. All transfer RNAs display the typical clover-leaf secondary structure except for <i>trnS (AGN)</i>. The unique repeat region is 974 bp long, in which a 305-bp repeat unit repeats 3.19 times. The phylogenetic tree supports a sister relationship of <i>S. ralumensis </i>and<i> Greenidea psidii</i>.</p>
Figure 2 in The complete mitochondrial genome of Parnassius actius (Lepidoptera: Papilionidae: Parnassinae) with the related phylogenetic analysis
Figure 2. Codon distribution in nine Parnassiinae mitogenome (Numbers to the left refer to the total number of codons; CDspT— codons per thousand codons; codon families are provided on the x axis).
The complete mitochondrial genome of Eutrichosiphum pasaniae (Okajima, 1908) (Hemiptera: Aphididae: Greenideinae)
<p><span>In this study, we sequenced the complete mitochondrial genome of<i> Eutrichosiphum pasaniae </i>through Illumina platform. The circular mitogenome is 16,500 bp in length and composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), a large control region and a special repeat region. The nucleotide composition of whole mitogenome is strongly AT-biased (85.5%). All PCGs start with ATN and end with TAA except for <i>cox1 </i>which terminates with an incomplete stop codon T. All tRNAs have a typical clover-leaf secondary structure except for<i> trnS (AGN)</i>. The lengths of <i>rrnL</i>, <i>rrnS</i> and control region are 1276, 774 and 996 bp, respectively. The repeat region with a length of 909 bp is located between <i>trnE</i> and <i>trnF</i> and consists of 4.1 repeat units. The phylogenetic tree supports the sister relationship of <i>Eutrichosiphum pasaniae </i>and <i>Greenidea psidii</i>.</span></p>
Supplementary material 4 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Table S4. PartitionFinder results
Supplementary material 2 from: Zhang R, Tang Q, Deng L (2021) The complete mitochondrial genome of Microphysogobio elongatus (Teleostei, Cyprinidae) and its phylogenetic implications. ZooKeys 1061: 57-73. https://doi.org/10.3897/zookeys.1061.70176
Table S2. List of species used to construct the phylogenetic tree in the present study
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