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Figure 1c from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774
Figure 1c - Two examples of IRES during contrasting hydrological phases. <br> The Calavon River in Mediterranean during flowing phase
Figure 1 from: Soares D, Adams R, Hammond S, Slay ME, Fenolio DB, Niemiller ML (2017) Evolution of Coprophagy and Nutrient Absorption in a Cave Salamander. Subterranean Biology 24: 1-9. https://doi.org/10.3897/subtbiol.24.15013
Figure 1 - Eurycea spelaea showing troglobitic characters, lack of pigmentation and microphthalmy. Scale bar: 0.5 cm.
Figure 2 from: Soares D, Adams R, Hammond S, Slay ME, Fenolio DB, Niemiller ML (2017) Evolution of Coprophagy and Nutrient Absorption in a Cave Salamander. Subterranean Biology 24: 1-9. https://doi.org/10.3897/subtbiol.24.15013
Figure 2 - Regression lines based on body mass loss of different diet types and amounts. Salamanders were fed nothing (green), live amphipods (red) or guano (blue). Groups were fed every four days based on their initial body weight, with 2.5% (A), 5% (B) or 10% (C). The calculated regression lines were as follows: Control -1.16x+96.01 R2 = 0.54, n = 10; 2.5%amphipod -0.26x+98.49, R2 = 0.39, n = 6; 2.5%guano -0.70x+93.58, R2 = 0.02, n = 6; 5%amphipod -0.28x+102.22, R2 = 0.03, n = 6; 5%guano -1.12x+98.89, R2 = 0.77, n = 6; 10%amphipod -0.35x+103.36, R2 = 0.21, n = 6; 10%guano -0.70x+96.01, R2 = 0.53, n = 6.
Supplementary material 1 from: D'Cruze N, Machado F, Matthews N, Balaskas M, Carder G, Richardson V, Vieto R (2017) A review of wildlife ecotourism in Manaus, Brazil. Nature Conservation 22: 1-16. https://doi.org/10.3897/natureconservation.22.17369
Relevant Legislation : Data type: Table
Figures 2-34 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figures 2-34 - Overview of the most abundant taxa (≥ 1% relative abundance in at least one sample). 2 Cyclotella meneghiniana 3 Eunotia cf. meridiana 4 Eunotia sp. 1 5 Eunotia sp. 3 6 Eunotia sp. 2 7 Eunotia minor 8 Fragilaria pectinalis 9 Fragilaria austriaca 10 Fragilaria bidens 11 Fragilaria tenera 12–13 Achnanthidium sp. 5 14–15 Achnanthidium aff. catenatum 16–17 Achnanthidium sp. 1 18–19 Achnanthidium minutissimum 20–21 Achnanthidium sp. 4 22–23 Planothidium rostratum 24–25 Planothidium victori 26–27 Planothidium incuriatum 28–29 Planothidium cryptolanceolatum 30–31 Cocconeis pediculus 32–33 Cocconeis sp. 2 34 Ulnaria ulna. Scale bar 10 μm.
Figures 35-77 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figures 35-77 - Overview of the most abundant taxa (≥ 1% relative abundance in at least one sample). 35 Fistulifera saprophila 36 Craticula subminuscula 37 Craticula sp. 2 38 Craticula molestiformis 39 Craticula cf. pumilio 40 Sellaphora cosmopolitana 41 Sellaphora sp. 3 42 Eolimna sp. 1 43 Sellaphora nigri 44 Sellaphora madida 45 Sellaphora queretana 46 Sellaphora atomoides 47 Sellaphora saugerresii 48 Sellaphora pupula 49 Mayamaea permitis 50 Reimeria sinuata 51 Diadesmis confervacea 52 Nupela wellneri 53 Geissleria decussis 54 Navicula veneta 55 Navicula erifuga 56 Navicula libonensis 57 Navicula capitatoradiata 58 Navicula symmetrica 59 Navicula notha 60 Navicula cf. cryptocephala 61 Encyonopsis cf. thienemannii 62 Navicula gregaria 63 Navicula cryptocephala 64 Navicula reichardtiana 65 Brachysira altepetlensis 66 Encyonema minutum 67 Halamphora montana 68 Amphora pediculus 69 Navicula trivialis 70 Navicula rostellata 71 Frustulia crassinervia 72 Encyonema brevicapitatum 73 Encyonema minutiforme 74 Encyonema cf. minutiforme 75 Encyonema cf. hebridiforme 76 Encyonema jemtlandicum 77 Encyonema pergracile. Scale bar 10 μm.
Figures 78-117 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figures 78-117 - Overview of the most abundant taxa (≥ 1% relative abundance in at least one sample). 78 Gomphonema exilissimum 79 Gomphonema parvuliforme 80 Gomphonema cf. parvuliforme 81 Gomphonema parvulum 82 Gomphonema lagenula 83 Gomphonema cf. lagenula 84 Gomphonema aff. sarcophagus 85 Gomphonema aff. mariovense 86 Gomphonema subclavatum 87 Gomphonema stonei 88 Gomphonema pumilum 89 Gomphonema graciledictum 90 Gomphonema naviculoides 91 Gomphonema minusculum 92 Gomphonema sp. 4 93 Gomphonema sp. 2 94 Gomphonema innocens 95 Gomphonema aff. parvulius 96 Nitzschia desertorum 97 Nitzschia semirobusta 98 Nitzschia inconspicua 99 Nitzschia sp. 1 100 Nitzschia supralitorea 101 Nitzschia cf. hantzschiana 102 Nitzschia fonticola 103 Nitzschia perminuta 104 Surirella angusta 105 Nitzschia acicularis 106 Nitzschia amphibia 107 Nitzschia communis 108 Nitzschia gracilis 109 Nitzschia paleacea 110 Nitzschia intermedia 111 Nitzschia palea 112 Nitzschia palea var. tenuirostris 113 Nitzschia palea var. debilis 114 Nitzschia balcanica 115 Nitzschia linearis 116 Epithemia sorex 117 Epithemia adnata. Scale bar 10 μm.
Figure 145 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figure 145 - Canonical Correspondence Analysis (CCA) ordination plot. Distribution of sampling sites based on diatom abundance data in relation to statistically significant environmental variables. Three groups of samples are depicted within ovals. For visualization purposes, only species with significant IndVals (p< 0.05) are included in the plot. Black squares correspond to species; numbers within the black squares refer to taxa names in Table 4. Sampling sites are codified as follows: a Roman numeral indicating the sampling campaign (I, II and III), followed by an underscore symbol and an Arabic numeral indicating the sampling site (sites 1 to 14). For abbreviations and units of the physical and chemical parameters refer to Table 2.
Figures 133-144 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figures 133-144 - Sellaphora queretana D. Mora, N. Abarca & J. Carmona, sp. nov. LM (133–140) and SEM (141–144). 133–137 type material, from stream Los Ailes 1, Querétaro, Mexico, collected on 18.09.2013 137 designated as holotype 138–140 population from stream Laguna de Servín 2, collected on 29.09.2013 141–144 from type material: 141, 142, 144 external views of entire valves 143 internal view of an entire valve. Scale bars 5 μm (133–140); 1 μm (141–144).
Figures 118-132 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figures 118-132 - Brachysira altepetlensis D. Mora, R. Jahn & N. Abarca, sp. nov. LM (118–128) and SEM (129–132). 118–123 type material, from Paredones stream, Guanajuato, Mexico, collected on 07.09.2014 121 designated as holotype 124–125 collected from type location but on 06.10.2013 126–128 collected from type location but on 09.02.2014 129–132 from type material: 129–130 external view of entire valves 131 external view of an entire valve showing elongated areolae in the valve mantle 132 internal view of entire valve, showing occlusion of the areolae by hymens. The arrow points at Voigt discontinuity. Scale bars 10 μm (118–128); 5 μm (129–132).
Figure 1 from: Mora D, Carmona J, Jahn R, Zimmermann J, Abarca N (2017) Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species. PhytoKeys 88: 39-69. https://doi.org/10.3897/phytokeys.88.14612
Figure 1 - Location of the area of study. A Map of Mexico, showing the location of the Lerma-Chapala Basin in the center of the country. B Location of the 14 sampling sites in the Lerma-Chapala Basin, indicated by red dots. The numbers next to the red dots refer to the name of the sampling site in Table 1.
Supplementary material 4 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The interactive Krona chart associated with Figure 2 :
Supplementary material 2 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The MIxS-BE annotations implemented for the built environment sequences during the workshop :
Figure 3 from: Monteiro M, Figueira R, Melo M, Mills MSL, Beja P, Bastos-Silveira C, Ramos M, Rodrigues D, Neves IQ, Consciência S, Reino L (2017) The collection of birds from Mozambique at the Instituto de Investigação Científica Tropical of the University of Lisbon (Portugal). ZooKeys 708: 139-152. https://doi.org/10.3897/zookeys.708.13351
Figure 3 - Temporal profile of the sampling leading to bird skin collection held at the zoological collections of IICT-ULisboa (Lisbon). Blue dots represent sampling years for each Order.
Figure 2 from: Monteiro M, Figueira R, Melo M, Mills MSL, Beja P, Bastos-Silveira C, Ramos M, Rodrigues D, Neves IQ, Consciência S, Reino L (2017) The collection of birds from Mozambique at the Instituto de Investigação Científica Tropical of the University of Lisbon (Portugal). ZooKeys 708: 139-152. https://doi.org/10.3897/zookeys.708.13351
Figure 2 - Distribution map of the locations of specimens' occurrence throughout the territory of Mozambique held in the zoological collections of IICT-ULisboa (Lisbon).
Figure 1 from: Monteiro M, Figueira R, Melo M, Mills MSL, Beja P, Bastos-Silveira C, Ramos M, Rodrigues D, Neves IQ, Consciência S, Reino L (2017) The collection of birds from Mozambique at the Instituto de Investigação Científica Tropical of the University of Lisbon (Portugal). ZooKeys 708: 139-152. https://doi.org/10.3897/zookeys.708.13351
Figure 1 - Total number of bird specimens from Mozambique, per family, held in the zoological collections of IICT-ULisboa (Lisbon). The legend lists the corresponding Orders, with assigned colours. Only the categories of families having 15 or more specimens are labelled.
Figure 2 from: Sánchez-Peña SR, Chacón-Cardosa MC, Canales-del-Castillo R, Ward L, Resendez-Pérez D (2017) A new species of Trachymyrmex (Hymenoptera, Formicidae) fungus-growing ant from the Sierra Madre Oriental of northeastern Mexico. ZooKeys 706: 73-94. https://doi.org/10.3897/zookeys.706.12539
Figure 2 - Full face (top row), lateral (middle row) and dorsal (bottom row) views of Trachymyrmex pakawa and Trachymyrmex smithi. Left column, T. pakawa. Right column, T. smithi. Scale bars: top, 0.5 mm; middle and bottom, 1.0 mm.
Figure 1 from: Sánchez-Peña SR, Chacón-Cardosa MC, Canales-del-Castillo R, Ward L, Resendez-Pérez D (2017) A new species of Trachymyrmex (Hymenoptera, Formicidae) fungus-growing ant from the Sierra Madre Oriental of northeastern Mexico. ZooKeys 706: 73-94. https://doi.org/10.3897/zookeys.706.12539
Figure 1 - Geographical distribution of Trachymyrmex pakawa n. sp. and its closest relative, Trachymyrmex smithi, in the southwestern USA and northern Mexico (from Rabeling et al. 2007 and this study). Red stars: collection records of T. pakawa. Blue circles: reported collection points of T. smithi. Yellow area, Chihuahuan desert. Green area, Sierra Madre Oriental mountain range.
Figure 4 from: Sánchez-Peña SR, Chacón-Cardosa MC, Canales-del-Castillo R, Ward L, Resendez-Pérez D (2017) A new species of Trachymyrmex (Hymenoptera, Formicidae) fungus-growing ant from the Sierra Madre Oriental of northeastern Mexico. ZooKeys 706: 73-94. https://doi.org/10.3897/zookeys.706.12539
Figure 4 - A Bayesian phylogenetics estimates and B haplotype networks of COI and EF1-α-F1 sequences of North American Trachymyrmex species. The phylogenetics inference was calculated with COI and EF1-α-F1; clade support is indicated above branch posterior probability by Bayesian inference. Due to the incomplete taxon sampling the tree was midpoint rooted. In the minimum-spanning haplotype networks for COI and EF1-α-F1, each circle represents a haplotype, with size proportional to the haplotype's frequency in the population. Numbers along branches represent substitutions.
Figure 3 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
Figure 3 Analysis of the MIxS-BE "building occupancy type" (type of building where the underlying sample was taken). The figure is based on Abarenkov et al. (2016) plus the data added during the workshop, such that it indicates the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2017.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.