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675 results for “Introgression”
Interspecific Introgressive Origin of Genomic Diversity in the House Mouse
GEO Series GSE62906. Mus musculus domesticus; Mus musculus. 6 samples. Type: SNP genotyping by SNP array.
Introgression of genes and mechanisms conferring tolerance to iron toxicity from wild rice species Oryza meridionalis into domesticated rice Oryza sativa
GEO Series GSE151559. Oryza sativa Japonica Group; Oryza meridionalis; Oryza sativa Japonica Group x Oryza meridionalis. 18 samples. Type: Expression profiling by high throughput sequencing.
Pre-anthesis anthers of S. pennellii introgression lines
GEO Series GSE77232. Solanum lycopersicum; Solanum lycopersicum x Solanum pennellii. 21 samples. Type: Expression profiling by array.
Integrative approach for precise genotyping and transcriptomics of a salt tolerant introgression line in rice
GEO Series GSE167342. Oryza sativa. 12 samples. Type: Expression profiling by high throughput sequencing.
Post-pollination carpels of S. pennellii introgression lines
GEO Series GSE77235. Solanum lycopersicum; Solanum lycopersicum x Solanum pennellii. 17 samples. Type: Expression profiling by array.
Fig. 2 in Non-ultrametric phylogenetic trees shed new light on Neanderthal introgression
Fig. 2 Novel non-ultrametric approach for detection of genetic flows timing. After the split (upper side of the square) at a given time in the past, two branches are generated: the branch of the Ancient Sample I (left side) and the branch of the Ancient Sample II (right side). When the Ancient Sample II's DNA is introgressed by the Ancient Sample I's DNA (or vice versa), the final result is a single modern population/ species containing percentages of both the genetic materials. To provide an example, the figure suggests that in the lower side of the square the 65% of the single modern population's DNA comes from the Ancient Sample II, while the remaining 35% from the Ancient Sample I. The arrow from the upper right vertex to the lower side of the square gives rise to the angle β. The two numbered yellow circles illustrate the two steps of the procedure described in the main text
Hybridisation in Primates: Cryptic Admixture and Adaptive Introgression Appendix A Materials
<p>This dataset includes supporting tables and figures for my PhD thesis at the University of Toronto, entitled "Hybridisation in Primates: Cryptic Admixture and Adaptive Introgression" in partial fulfillment of the degree requires for the Department of Anthropology (Evolutionary Anthropology). The data contains Tables A1-A7, high resolution images for Figures 2.1-2.4 and supporting figures A1-A16 that are described in chapter 2 and in Appendix A. </p>
FIGURE 2. Spider images. A H in Phylogeography of the Habronattus amicus species complex (Araneae: Salticidae) of western North America, with evidence for localized asymmetrical mitochondrial introgression
FIGURE 2. Spider images. A H. amicus female (HA1165, Summer Lake); B H. ustulatus female (HA1107, Summer Lake); C H. amicus male (HA1167, Summer Lake), right leg I, prolateral view; D H. ustulatus male (HA1111, Summer Lake), right leg I, prolateral view; E H. amicus male (HA1167), face & palp, frontal view; F H. ustulatus male (HA1111), face & palp, frontal view; G H. ustulatus female, Fossil Lake; H H. amicus male, Fossil Lake. All scale bars = 1 mm. Images A–F captured using a Visionary Digital BK plus system (http://www.visionarydigital.com), including a Canon 40D digital camera, Infinity Optics Long Distance Microscope, P-51 camera controller, and FX2 lighting system. Individual images were combined into a composite image using Helicon Focus software, which was then edited using Adobe Photoshop CS3.
Figure 3 in The role of mitochondrial introgression in illuminating the evolutionary history of Nearctic treefrogs
Figure 3. Geographical distribution of inferred mitochondrial lineages within Hyla eximia group treefrogs. Lineages are colour-coded to correspond to haplotypes plotted on the map. Circled dots indicate localities of samples used in multilocus species-tree reconstructions. Five mismatches between species designation (H. eximia, abbreviated ex; Hyla euphorbiacea, abbreviated eu) and mitochondrial lineage are noted. Abbreviations: CD, Chihuahuan Desert; CMP, Central Mexican Plateau; CMPsw, south-western Central Mexican Plateau; CP, Colorado Plateau; DGO, Durango; E, eastern; OcS, southern Sierra Madre Occidental; OrS, southern Sierra Madre Oriental; SD, Sonoran Desert; W, western.
Expression profile of high yielding rice introgression line
GEO Series GSE30487. Oryza sativa. 12 samples. Type: Expression profiling by array.
Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression
GEO Series GSE18060. Saccharomyces bayanus; Saccharomyces cerevisiae. 12 samples. Type: Genome variation profiling by array.
Transcriptome profiling of ozone responses of Arabidopsis thaliana natural accessions Col-0 and Cvi-0, and a near-isogenig line Col-S with Cvi-0's ozone sensitivity introgressed into Col-0
GEO Series GSE102363. Arabidopsis thaliana. 18 samples. Type: Expression profiling by high throughput sequencing.
Hybrid lizards with introgressed mtDNA show resistance to DNA damage from Reactive Oxygen Species
GEO Series GSE255990. Urosaurus ornatus; Urosaurus graciosus. 18 samples. Type: Expression profiling by high throughput sequencing.
A Multimodal Study of Wild Tomato Species Introgressions Unravels the Genetic Basis of Transcriptome and Metabolome Variation in Important Fruit Traits
GEO Series GSE151451. Solanum lycopersicum x Solanum pennellii. 523 samples. Type: Expression profiling by high throughput sequencing.
Hybridisation in Primates: Cryptic Admixture and Adaptive Introgression Appendix B Materials
<p>This dataset includes supporting tables and figures for my PhD thesis at the University of Toronto, entitled "Hybridisation in Primates: Cryptic Admixture and Adaptive Introgression" in partial fulfillment of the degree requires for the Department of Anthropology (Evolutionary Anthropology). The data contains Tables B1-B14, high resolution images for Figures 3.1-3.5 and supporting figures B1-B38 that are described in chapter 3 and in Appendix B. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.