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1,076 results for “Metabarcoding”
Supplementary material 2 from: Ács É, Bíró T, Boros E, Dobosy P, Duleba M, Földi A, Kiss KT, Levkov Z, Orgoványi P, Szén OP, Trábert Z, Vadkerti E, Grigorszky I (2023) Halamphora taxa in Hungarian soda pans and shallow soda lakes detected via metabarcoding and microscopic analyses. Metabarcoding and Metagenomics 7: e111679. https://doi.org/10.3897/mbmg.7.111679
Pairwise p-distance values and number of differences
Supplementary material 1 from: Magesh S, Jonsson V, Bengtsson-Palme J (2019) Mumame: a software tool for quantifying gene-specific point-mutations in shotgun metagenomic data. Metabarcoding and Metagenomics 3: e36236. https://doi.org/10.3897/mbmg.3.36236
Table S1
Supplementary material 2 from: Magesh S, Jonsson V, Bengtsson-Palme J (2019) Mumame: a software tool for quantifying gene-specific point-mutations in shotgun metagenomic data. Metabarcoding and Metagenomics 3: e36236. https://doi.org/10.3897/mbmg.3.36236
Figure S1
Supplementary material 9 from: Pearman JK, Casas L, Michell C, Aldanondo N, Mojib N, Holtermann K, Georgakakis I, Curdia J, Carvalho S, Gusti A, Irigoien X (2022) Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters. Metabarcoding and Metagenomics 6: e79208. https://doi.org/10.3897/mbmg.6.79208
Table S4
Supplementary material 3 from: Pearman JK, Casas L, Michell C, Aldanondo N, Mojib N, Holtermann K, Georgakakis I, Curdia J, Carvalho S, Gusti A, Irigoien X (2022) Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters. Metabarcoding and Metagenomics 6: e79208. https://doi.org/10.3897/mbmg.6.79208
Figure S3
Supplementary material 2 from: Reid BN, Servis JA, Timmers M, Rohwer F, Naro-Maciel E (2022) 18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific. Metabarcoding and Metagenomics 6: e78762. https://doi.org/10.3897/mbmg.6.78762
Figure S2
Supplementary material 8 from: Pearman JK, Casas L, Michell C, Aldanondo N, Mojib N, Holtermann K, Georgakakis I, Curdia J, Carvalho S, Gusti A, Irigoien X (2022) Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters. Metabarcoding and Metagenomics 6: e79208. https://doi.org/10.3897/mbmg.6.79208
Table S3
Supplementary material 5 from: Pearman JK, Casas L, Michell C, Aldanondo N, Mojib N, Holtermann K, Georgakakis I, Curdia J, Carvalho S, Gusti A, Irigoien X (2022) Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters. Metabarcoding and Metagenomics 6: e79208. https://doi.org/10.3897/mbmg.6.79208
Figure S5
Supplementary material 6 from: Pearman JK, Casas L, Michell C, Aldanondo N, Mojib N, Holtermann K, Georgakakis I, Curdia J, Carvalho S, Gusti A, Irigoien X (2022) Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters. Metabarcoding and Metagenomics 6: e79208. https://doi.org/10.3897/mbmg.6.79208
Table S1
Supplementary material 5 from: Reid BN, Servis JA, Timmers M, Rohwer F, Naro-Maciel E (2022) 18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific. Metabarcoding and Metagenomics 6: e78762. https://doi.org/10.3897/mbmg.6.78762
Table S3
Supplementary material 6 from: Reid BN, Servis JA, Timmers M, Rohwer F, Naro-Maciel E (2022) 18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific. Metabarcoding and Metagenomics 6: e78762. https://doi.org/10.3897/mbmg.6.78762
Table S4
Supplementary material 1 from: Reid BN, Servis JA, Timmers M, Rohwer F, Naro-Maciel E (2022) 18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific. Metabarcoding and Metagenomics 6: e78762. https://doi.org/10.3897/mbmg.6.78762
Figure S1
Supplementary material 4 from: Reid BN, Servis JA, Timmers M, Rohwer F, Naro-Maciel E (2022) 18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific. Metabarcoding and Metagenomics 6: e78762. https://doi.org/10.3897/mbmg.6.78762
Table S2
Supplementary material 1 from: Pearman JK, Casas L, Michell C, Aldanondo N, Mojib N, Holtermann K, Georgakakis I, Curdia J, Carvalho S, Gusti A, Irigoien X (2022) Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters. Metabarcoding and Metagenomics 6: e79208. https://doi.org/10.3897/mbmg.6.79208
Figure S1
Supplementary material 2 from: Alter SE, Arroyave J (2022) Environmental DNA metabarcoding is a promising method for assaying fish diversity in cenotes of the Yucatán Peninsula, Mexico. Metabarcoding and Metagenomics 6: e89857. https://doi.org/10.3897/mbmg.6.89857
OTU (Operational Taxonomic Unit) table
Supplementary material 1 from: Alter SE, Arroyave J (2022) Environmental DNA metabarcoding is a promising method for assaying fish diversity in cenotes of the Yucatán Peninsula, Mexico. Metabarcoding and Metagenomics 6: e89857. https://doi.org/10.3897/mbmg.6.89857
Summary results from initial eDNA raw data processing
Supplementary material 8 from: Bíró T, Duleba M, Földi A, Kiss KT, Orgoványi P, Trábert Z, Vadkerti E, Wetzel CE, Ács É (2022) Metabarcoding as an effective complement of microscopic studies in revealing the composition of the diatom community – a case study of an oxbow lake of Tisza River (Hungary) with the description of a new Mayamaea species. Metabarcoding and Metagenomics 6: e87497. https://doi.org/10.3897/mbmg.6.87497
Alignment S2
Supplementary material 2 from: Bíró T, Duleba M, Földi A, Kiss KT, Orgoványi P, Trábert Z, Vadkerti E, Wetzel CE, Ács É (2022) Metabarcoding as an effective complement of microscopic studies in revealing the composition of the diatom community – a case study of an oxbow lake of Tisza River (Hungary) with the description of a new Mayamaea species. Metabarcoding and Metagenomics 6: e87497. https://doi.org/10.3897/mbmg.6.87497
Table S2
Supplementary material 1 from: Levesque-Beaudin V, Steinke D, Böcker M, Thalinger B (2023) Unravelling bird nest arthropod community structure using metabarcoding. Metabarcoding and Metagenomics 7: e103279. https://doi.org/10.3897/mbmg.7.103279
List of 103 distinct taxa
Supplementary material 3 from: Bíró T, Duleba M, Földi A, Kiss KT, Orgoványi P, Trábert Z, Vadkerti E, Wetzel CE, Ács É (2022) Metabarcoding as an effective complement of microscopic studies in revealing the composition of the diatom community – a case study of an oxbow lake of Tisza River (Hungary) with the description of a new Mayamaea species. Metabarcoding and Metagenomics 6: e87497. https://doi.org/10.3897/mbmg.6.87497
Table S3
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.