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zenodo28/100

Figure 5 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451

Figure 5 - Example of an image in WoRCS, showing the habitus and some aspects of the biology of a cave species.

opencc-by-4.0Sep 2016View details →
zenodo28/100

Figure 4 from: Gerovasileiou V, Martínez A, Álvarez F, Boxshall G, Humphreys W, Jaume D, Becking L, Muricy G, van Hengstum P, Dekeyzer S, Decock W, Vanhoorne B, Vandepitte L, Bailly N, Iliffe T (2016) World Register of marine Cave Species (WoRCS): a new Thematic Species Database for marine and anchialine cave biodiversity. Research Ideas and Outcomes 2: e10451. https://doi.org/10.3897/rio.2.e10451

Figure 4 - The WoRCS taxon details page includes taxonomic information, references, vernacular names and distribution data, along with a series of attributes gathering information about morphology, biology, reproduction and ecology of each cave species.

opencc-by-4.0Sep 2016View details →
zenodo28/100

Figure 9 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 9 - Top: to retrieve a scanned BHL book document from BHL click on the "Download Contents" icon on the top-right and select to browse the corresponding web page on the Internet Archive ("View at Internet Archive"). Bottom: The link to the jpeg2000 (JP2) image is found on the bottom right. Sources: top: http://biodiversitylibrary.org/page/9663476; bottom: https://archive.org/details/mittheilungenaus17staz.

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 3 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 3 - Examples of stylistic and typographic elements in legacy publications that delay the structured extraction of data: a) ranges or more than one value in one field; b) non-metric units which have to be converted to the SI system; c and d) unclear meaning of symbols; e) font type may cause problems in reading and/or optical character recognition (e.g. misinterpreting an "e" as "c" or "o"; "ll" as "11" or "U", "C" as "C" or "O") (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 10 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 10 - Open Data: an emerging landscape of data and other academic publications (based on a slide by Dmitry Schigel).

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 8 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 8 - Plazi workflow: from the publication through different levels of data processing to final availability of structured data.

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 5 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 5 - Biodiversity related articles and instructions to the authors available on the Biodiversity Literature Repository home page.

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 2 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 2 - Stations without coordinates (red box) are commonly listed, as well as non-SI units, here: depth as fathoms (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 4 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 4 - Complex natural language features that can lead to incorrect species-occurrence extraction (based on a slide by Aglaia Legaki, Gabriella Papastefanou and Marilena Tsompanou).

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 6 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 6 - Calman (1906) is available in BLR as https://zenodo.org/record/14941. The taxonomic treatment of Leucon longirostris G.O. Sars (shown above) extracted from this expedition document is also avaible in BLR: https://zenodo.org/record/14942. Both links have unique DOIs assigned to them and thus are also retrievable as https://doi.org/10.5281/zenodo.14941, and https://doi.org/10.5281/zenodo.14942, accordingly.

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 1 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445

Figure 1 - Workflow depicting the process of manually extracting data from legacy literature workflow, as currently performed in in EMODnet WP4. Abbreviations: OCR = Optical Character Recognition; OBIS = Ocean Biogeographic Information System; DwC = Darwin Core; IPT = Integrated Publishing Toolkit; medOBIS = Mediterranean Ocean Biogeographic Information System, GBIF = Global Biodiversity Information Facility

opencc-by-4.0Jul 2016View details →
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Figure 1 from: Madan C (2016) Improved understanding of brain morphology through 3D printing: A brief guide. Research Ideas and Outcomes 2: e10398. https://doi.org/10.3897/rio.2.e10398

Figure 1 - Illustration of the processing pipeline involved in converting a structural MRI volume to a print-ready surface mesh.

opencc-by-4.0Sep 2016View details →
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Figure 2 from: Madan C (2016) Improved understanding of brain morphology through 3D printing: A brief guide. Research Ideas and Outcomes 2: e10398. https://doi.org/10.3897/rio.2.e10398

Figure 2 - Photos of a resulting 3D-printed surface. (A) View of the full models. (B) Close-up of the coronal cross-section. (C) Close-up of the lateral surface. (D) Photo of the Machina Mk2 X20 printers used to print the models, located at the University of Alberta Libraries.

opencc-by-4.0Sep 2016View details →
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Figure 2 from: Madan C (2016) Improved understanding of brain morphology through 3D printing: A brief guide. Research Ideas and Outcomes 2: e10266. https://doi.org/10.3897/rio.2.e10266

Figure 2 - Photos of a resulting 3D-printed surface. (A) View of the full models. (B) Close-up of the coronal cross-section. (C) Close-up of the lateral surface. (D) Photo of the Machina Mk2 X20 printers used to print the models, located at the University of Alberta Libraries.

opencc-by-4.0Aug 2016View details →
zenodo28/100

Figure 1 from: Madan C (2016) Improved understanding of brain morphology through 3D printing: A brief guide. Research Ideas and Outcomes 2: e10266. https://doi.org/10.3897/rio.2.e10266

Figure 1 - Illustration of the processing pipeline involved in converting a structural MRI volume to a print-ready surface mesh.

opencc-by-4.0Aug 2016View details →
zenodo28/100

Figure 1 from: Smith C, Todd M, Patiny L, Swain C, Southan C, Williamson A, Clark A (2016) SCINDR - The SCience INtroDuction Robot that will Connect Open Scientists. Research Ideas and Outcomes 2: e9995. https://doi.org/10.3897/rio.2.e9995

Figure 1 - SCINDR, the Science Introduction Robot, watches health research being carried out and, like a good host, introduces people with shared interests, so they can do better work together.

opencc-by-4.0Jul 2016View details →
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Figure 2 from: Smith C, Todd M, Patiny L, Swain C, Southan C, Williamson A, Clark A (2016) SCINDR - The SCience INtroDuction Robot that will Connect Open Scientists. Research Ideas and Outcomes 2: e9995. https://doi.org/10.3897/rio.2.e9995

Figure 2 - Example of currently functioning Electronic Laboratory Notebook (ELN) entry to which SCINDR will be added. Further enhancements such as real time NMR, LCMS and IR data visualization have been developed and will be added to extend the ELN capability.

opencc-by-4.0Jul 2016View details →
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Figure 1 from: Irawan D, Priyambodho A, Rachmi C, Wibowo D, Fahmi A (2016) Bibliometric study to assist research topic selection: a case from research design on Jakarta's groundwater (part 1). Research Ideas and Outcomes 2: e9841. https://doi.org/10.3897/rio.2.e9841

Figure 1 - Density map of the papers based on the key words (Red: dense paper population, green: less dense). Dataset is available as Suppl. material 1 (in Irawan et al. 2016).

opencc-by-4.0Jul 2016View details →
zenodo28/100

Figure 1d from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774

Figure 1d - Two examples of IRES during contrasting hydrological phases. <br> The Calavon River in Mediterranean during dry phase

opencc-by-4.0Oct 2017View details →
zenodo28/100

Figure 1a from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774

Figure 1a - Two examples of IRES during contrasting hydrological phases. <br> The Clauge River in the temperate Jura, France, during dry phase

opencc-by-4.0Oct 2017View details →

ScienceDex guides

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record