Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
23,670
datasets available to search
ShareScore release 0.7.1
Dataset results
23,670 results for “Site”
PIE LTER Eddy flux measurements during 2017 from second high marsh site (Spartina patens/short Spartina alterniflora) Tall Tower off Nelson Island Creek, Rowley, Massachusetts
We deployed an eddy covariance system to measure ecosystem-atmosphere exchange of CO2 above a high marsh system (Spartina patens, short Spartina alterniflora) located on the Parker River Wildlife Refuge in marshes of Plum Island Sound, Rowley MA. The system is located near a higher elevation rock outcroppingprotected area which allows the tower set up to remain during the Winter as it is protected from ice flows. The data represents CO2 exchange for all 12 months of 2017.
PIE LTER, marsh surface marker horizon measurements at each Surface Elevation Table (SET) site, Rowley, MA.
Marker horizon depth measurements at each Surface Elevation Table (SET) site. Marker horizons are commonly used in conjunction with the SET. Marker horizons measure vertical accretion which predominantly incorporates surface processes.
Aboveground biomass from control sites in a Spartina alterniflora-dominated salt marsh at Stackyard Rd, Nelson Island, Parker River NWR, Plum Island Ecosystem LTER, Rowley, MA (2019-2025).
Aboveground biomass is determined non-destructively at permanent plots in a Spartina alterniflora-dominated salt marsh on Nelson Island near Stackyard Rd in the Parker River NWR within the Plum Island Ecosystems (PIE) LTER site, MA.
PIE LTER YSI EXO2 sonde 15-minute interval water quality measurements of water column temperature, salinity, oxygen, pH, algae, fluorescent dissolved organic matter, turbidity, and depth at four sites in the Plum Island Estuary in year 2023.
Four YSI EXO2 water quality sondes were deployed from May 2023 to October 2023 at four sites in the Plum Island Estuary. One was at the mouth of the sound at the Ipswich Bay Yacht Club, one in the Rowley River, and two in the Parker River. The sondes measured water column temperature, salinity, oxygen, pH, algae, organic matter, turbidity, and depth in 15-minute intervals.
PIE LTER YSI EXO2 sonde 15-minute interval water quality measurements of water column temperature, salinity, oxygen, pH, algae, fluorescent dissolved organic matter, turbidity, and depth at four sites in the Plum Island Estuary in year 2024.
Four YSI EXO2 water quality sondes were deployed from April 2024 to October 2024 at four sites in the Plum Island Estuary. One was at the mouth of the sound at the Ipswich Bay Yacht Club, one in the Rowley River, and two in the Parker River. The sondes measured water column temperature, salinity, oxygen, pH, algae, organic matter, turbidity, and depth in 15-minute intervals.
PIE LTER YSI EXO2 sonde 15-minute interval water quality measurements of water column temperature, salinity, oxygen, pH, algae, fluorescent dissolved organic matter, turbidity, and depth at four sites in the Plum Island Estuary in year 2025.
Four YSI EXO2 water quality sondes were deployed from May 2025 to November 2025 at four sites in the Plum Island Estuary. One was at the mouth of the sound at the Ipswich Bay Yacht Club, one in the Rowley River, and two in the Parker River. The sondes measured water column temperature, salinity, oxygen, pH, algae, organic matter, turbidity, and depth in 15-minute intervals.
SBC LTER: BEACH: Invertebrate community structure and ecosystem functions of 24 sandy beach sites
These data result from a survey of 24 sandy beach sites in Santa Barbara and Ventura Counties in 2017 and 2018. We quantified marine macrophyte wrack subsidies, macroinvertebrates, and five ecosystem functions on three replicate transects at each site in order to elucidate the role of marine wrack subsidies on recipient ecosystem community structure and functioning. We also measured shorebirds at each site on three replicate survey days. Data are contained in four tables: 1) wrack cover and invertebrate community data by transect for each site used in our PiecewiseSEM model, 2) wrack cover and ecosystem function data by transect for each site used in our ecosystem multifunctionality estimate, 3) invertebrate species abundance and biomass by transect for each site, and 4) shorebird species abundance by survey date for each site.
Core Site Grid Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico
Begun in spring 2013, this project is part of a long-term study at the Sevilleta LTER measuring net primary production (NPP) across three distinct ecosystems: creosote-dominant shrubland (Site C), black grama-dominant grassland (Site G), and blue grama-dominant grassland (Site B). Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and foliage, over time and incorporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. A third sampling at Site C is performed in the winter. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV999, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV999, "Seasonal Biomass and Seasonal and Annual NPP for Core Grid Research Sites."
Small Mammal Mark-Recapture Population Dynamics at Core Research Sites at the Sevilleta National Wildlife Refuge, New Mexico (1989-present)
This file contains mark/recapture trapping data collected from 1989-present on permanently established web trapping arrays at sites on the Sevilleta National Wildlife Refuge in central New Mexico.. The trapping sites are representative of Chihuahuan Desert Grassland, Chihuahuan Desert Shrubland, Pinyon-Juniper Woodland, Juniper Savanna, Plains-Mesa Sand Scrub and Blue Grama Grassland. Not all sites have been trapped for the entire period: goatdraw (1992-2008), blue grama (2002-2004) rsgrass (1989-1998), rslarrea (1989-2009), two2 (1989-1998), savanna (1999-2002). Only 2 sites have been continuously been sampled since 1989 (5pgrass and 5plarrea). At each site 3 trapping webs are sampled for 3 consecutive nights in spring and fall. Each trapping web consists of 145 rebar stakes numbered from 1-145. There are 148 traps deployed on each web: 12 along each of 12 spokes radiating out from a central point (stake #145) plus 4 traps placed at the center of each web. The wide format facilitates community composition and species diversity analyses. Wide format has been reshaped so that the count data for each species are presented in a unique column. Data are summarized for each trapping web X trapping bout to present the mean number of animals per trap per night of the trapping bout. Wide format fills zeros for species that were not captured on a web during a given trapping bout. Long format facilitates filtering the dataset to a particular small mammal species of interest, but this format requires the addition of zeros to be functional for accurate data analysis requiring counts of animals.
Tosham तोशाम (Bhiwani district, Haryana). Fragment of Mathurā stone near monastic site.
<p>Tosham तोशाम (<a href="https://en.wikipedia.org/wiki/Bhiwani_district">Bhiwani district</a>, <a href="https://en.wikipedia.org/wiki/Haryana">Haryana</a>). Fragment of Mathurā stone near monastic site. </p>
Source apportionment of highly time-resolved elements during a firework episode from a rural freeway site in Switzerland
<p>Data to accompany "Source apportionment of highly time-resolved elements during a firework episode from a rural freeway site in Switzerland" publication in Atmospheric Chemistry and Physics. This repository contains measurement data in Härkingen, Switzerland, a permanent station of the Swiss National Air Pollution Monitoring Network (NABEL). Sampling was performed from 23 July to 13 August 2015. This repository has excel file (all data.xlsx) for all the raw data measured during campaign. In addition, it has data corresponding to each figures presented in main text published version.</p>
figure data for "Radiation environment and doses on Mars at Oxia Planum and Mawrth Vallis: support for exploration at sites with biosignature preservation potential", by F. Da Pieve, G. Gronoff, J. Guo et al (2020)
<p>The data are the tabular format of the plots in figures 2-7 of the paper submitted.</p> <p> </p>
Genome-wide association summary statistics of chronic musculoskeletal pain at four anatomic sites and their genetically independent components
<p>The dataset contains results of a genome-wide association study of distinct chronic musculoskeletal pain conditions: back pain, knee pain, neck pain, and hip pain. Additionally, there are genome-wide association summary statistics for four genetically independent components of pain conditions, listed above. For more details, please, read the paper XXX.</p> <p>All files contain association summary statistics for genome-wide association meta-analysis of the 265,000 white British individuals from the UK Biobank and additional 191,580 individuals of European Ancestry from the UK biobank (total N = 456,580). Cases and controls were defined based on questionnaire responses. First, participants responded to “Pain type(s) experienced in the last months” followed by questions inquiring if the specific pain had been present for more than 3 months. Those who reported back, neck or shoulder, hip, or knee pain lasting more than 3 months were considered chronic back, neck/shoulder, hip, and knee pain cases, respectively. Participants reporting no such pain lasting longer than 3 months were considered controls (regardless of whether they had another regional chronic pain, such as abdominal pain, or not). Individuals who preferred not to answer were excluded from the study. Besides this, we excluded individuals who reported more than 3 months of pain all over the body.</p> <p>The data are provided on an "AS-IS" basis, without warranty of any type, expressed or implied, including but not limited to any warranty as to their performance, merchantability, or fitness for any particular purpose. If investigators use these data, any and all consequences are entirely their responsibility. By downloading and using these data, you agree that you will cite the appropriate publication in any communications or publications arising directly or indirectly from these data; for utilization of data available prior to publication, you agree to respect the requested responsibilities of resource users under 2003 Fort Lauderdale principles; you agree that you will never attempt to identify any participant. This research has been conducted using the UK Biobank Resource and the use of the data is guided by the principles formulated by the UK Biobank.</p> <p><strong>When using downloaded data, please cite the corresponding paper and this repository:</strong></p> <ol> <li>Tsepilov et al 2020</li> </ol> <p><strong>Funding:</strong></p> <p>The work of YSA and SZS was supported by the Russian Ministry of Education and Science under the 5-100 Excellence Programme and by the Federal Agency of Scientific Organizations via the Institute of Cytology and Genetics (project 0324-2019-0040). The work of YAT, ASSh, and EEE was supported by the Russian Foundation for Basic Research (project 19-015-00151). The contribution of LСK was funded by PolyOmica. Dr. Suri was supported by VA Career Development Award # 1IK2RX001515 from the United States (U.S.) Department of Veterans Affairs Rehabilitation Research and Development (RR&D) Service. Dr. Suri is a Staff Physician at the VA Puget Sound Health Care System. The contents of this work do not represent the views of the U.S. Department of Veterans Affairs or the United States Government.</p> <p><strong>List of files:</strong></p> <ol> <li>Back_output_done.csv: GWAS summary statistics for the chronic back pain</li> <li>gpc1_output_done.csv: GWAS summary statistics for the GIP1</li> <li>gpc2_output_done.csv: GWAS summary statistics for the GIP2</li> <li>gpc3_output_done.csv: GWAS summary statistics for the GIP3</li> <li>gpc4_output_done.csv: GWAS summary statistics for the GIP4</li> <li>Hip_output_done.csv: GWAS summary statistics for the chronic hip pain</li> <li>Knee_output_done.csv: GWAS summary statistics for the chronic knee pain</li> <li>Neck_output_done.csv: GWAS summary statistics for the chronic neck pain</li> </ol> <p><strong>Column headers:</strong></p> <ol> <li>gwas_id: uninformative field</li> <li>rs_id: dbSNP rsID (GRCh37 build) </li> <li>snp_num: uninformative field</li> <li>chr: chromosome (GRCh37 build) </li> <li>bp: position (GRCh37 build) </li> <li>ea: effect allele (coded as "1")</li> <li>ra: reference allele (coded as "0")</li> <li>eaf: effect allele frequency</li> <li>af_ref: uninformative field</li> <li>beta: effect size of effect allele</li> <li>se: standard error of effect size</li> <li>p: P-value of association (without GC correction)</li> <li>n:Total sample size</li> <li>z: Z-statistic of association</li> <li>info: uninformative field</li> <li>af_outlier: uninformative field</li> <li>pz_outlier: uninformative field</li> </ol>
Site occupancy matrices, The River Ouse Project
<p>The <a href="http://www.sussex.ac.uk/riverouse/">River Ouse Project</a> was started by Dr Margaret Pilkington and colleagues in the Centre for Continuing Education, University of Sussex. Margaret is now retired with emeritus status and continues to run the project with a team of volunteers, in association with the University of Sussex. The team does botanical surveys of streamside grassland and steep wooded valleys (gills) in the upper reaches of the Sussex Ouse, a short flashy river arising on the southern slopes of the High Weald AONB (Area of Outstanding Natural Beauty). Survey sites are chosen on the basis of species richness, potential for restoration and contribution to flood control, and surveyed using the sampling methods outlined in Rodwell, J S (1992. British Plant Communities, Volume 3, Grasslands and Montane Communities). Survey data are transferred from the paper record taken in the field to Excel spreadsheets, and from there after validation and cleaning into two MySQL (MariaDB) databases, meadows and gills.</p> <p>The file is an extract from the meadows database. It contains binary data of the site occupancy for most of the plants encountered in meadow sites (stands, assemblies) sampled using five 2m x 2m quadrats. Details of the database are available here: <a href="https://zygodon.github.io/River-Ouse-Project-databases/">River Ouse Project databases</a>. </p> <p>For further details and access to the full database contact the author.</p>
predicted microRNA target sites (miRanda)
<p>Target predictions based on the miRanda algorithm. The target sites are scored for likelihood of mRNA downregulation using mirSVR, a regression model that is trained on sequence and contextual features of the predicted miRNA::mRNA duplex. Expression profiles are derived from a comprehensive sequencing project of a large set of mammalian tissues and cell lines of normal and disease origin.</p> <p>This collection contains the following datasets from the August 2010 release of <a href="http://www.microrna.org">microRNA.org</a>:</p> <ul> <li>16228619 predicted microRNA target sites in 34911 distinct 3'UTR from isoforms of 19898 human genes</li> <li>7459149 predicted microRNA target sites in 28287 distinct 3'UTR from isoforms of 19231 mouse genes</li> <li>586068 predicted microRNA target sites in 6865 distinct 3'UTR from isoforms of 6256 rat genes</li> <li>345671 predicted microRNA target sites in 12285 distinct 3'UTR from isoforms of 10532 fruitfly genes</li> </ul>
A Multi-Site Investigation into the Epidemiology of Chikungunya Virus in Neglected Regions of Indonesia
<p>Supporting datasets for phylogenetic analysis of Indonesian chikungunya virus sequences using BEAST v1.10.4.</p> <p> </p>
LTER-Italy site Lago Maggiore figure
<p>Geographical representation of the LTER-Italy site Lago Maggiore - DEIMS-ID <a href="https://deims.org/f30007c4-8a6e-4f11-ab87-569db54638fe">https://deims.org/f30007c4-8a6e-4f11-ab87-569db54638fe</a></p>
Data set supporting journal article: Markwitz, C., Knohl, A. and Siebicke, L.: "Evapotranspiration over agroforestry sites in Germany", Biogeosciences, 2020
<p>This data set contains all necessary data needed to replicate figures and analysis presented in the research article: Markwitz, C., Knohl, A. and Siebicke, L.: "Evapotranspiration over agroforestry sites in Germany", Biogeosciences, 2020.</p> <p>In detail, this data set contains 1) meteorological data and half-hourly evapotranspiration rates obtained by a conventional eddy covariance set-up, a low-cost eddy covariance set-up and an energy balance eddy covariance set-up for measurement campaigns of approximately four weeks duration (*_Fluxes_Campaigns_*); 2) raw data to recalculate flux footprints for the campaigns of approximately four weeks duration (*_Campaign_Footprints_*) and for the whole year (*_Annual_Footprints_*); 3) half-hourly evapotranspiration rates obtained by a low-cost eddy covariance set-up and an energy balance eddy covariance set-up gap-filled and corrected for energy balance closure (*_Fluxes_Annual_*). The data were collected at five agroforestry systems and five monoculture agriculture systems without trees across Northern Germany. </p>
Stratigraphy and genesis of the Biogenic Reefs in the Venice offshore: Tegnùa Chioggia, Site 2, Rock samples.
<p>Rock samples</p> <p>Research Activity: Geology of the Northern Adriatic Biogenic Reefs</p> <p>Project: Stratigraphy and genesis of the Biogenic Reefs in the Venice offshore </p> <p>Scientific coordinators: Sandra Donnici (CNR) and Luigi Tosi (CNR)</p> <p>Scientific Divers: Andrea Bergamasco (CNR), Luigi Tosi (CNR)</p> <p>Surface coordinator: Sandra Donnici (CNR)</p> <p>Sampling Date: 2013.10.18</p> <p>Sampling Site: Tegnùa Chioggia</p> <p>Site Coordinates: 45.230503 N; 12.489984 E (DEG WGS84)</p> <p>Seabed Depth: 22.2 m</p> <p>Biogenic reef elevation: 1.5 m</p>
Estonian Stone Age settlement sites: a dataset
<p>This dataset includes the list of Stone Age settlement sites in the territory of Estonia. The list was compiled from published sources, grey literature and existing database records for unpublished sites. The current revision (version 1) of the dataset includes sites from recent systematic surveys conducted until 2017 (with some exceptional sites found later). Only sites with known exact locations were included into the dataset.</p> <p>The sites are classified into four stages of the Stone Age: pre-pottery Mesolithic (9000–5200 cal. BC), Narva (5200–3900 cal. BC), Comb Ware (3900–1800 cal. BC) and Corded Ware (2800–2000 cal. BC). The classification is based on typo-chronology of find materials, also using existing radiocarbon and other dating methods, if possible. The number of sites is 410, with 244 pre-pottery Mesolithic sites, 39 sites with Narva pottery, 60 sites with Comb Ware and 67 sites with Corded Ware. As there is a row dedicated to every habitation period in a location the number of unique site locations is smaller.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.