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727 results for “phylogenetic diversity”
Data for "Local snow and fluvial conditions drive taxonomic, functional and phylogenetic plant diversity in tundra"
<p>These data and code are associated with the publication Rissanen et al. (2023) "<strong>Local snow and fluvial conditions drive taxonomic, functional and phylogenetic plant diversity in tundra</strong>" published in Oikos (doi:10.1111/oik.09998). Modelling data contain both diversity metrics and environmental variables. Raster stack of the spatially continuous environmental predictors were used to produce spatial predictions of diversity variation.</p> <p>Provided R code was used to model diversity-environment relationships. The data and analyses are described in the linked publication. The data should be sited properly.</p>
Datasets and scripts related to the manuscript "What makes the diverse flight of birds possible? Phylogenetic comparative analysis of avian alula morphology"
<p>"alula_data187.csv" and "alula_data162.csv" include the two duck sister species, Anas platyrhynchos and A. poecilorhyncha. The former lacks the migratory distance, while the latter contains the variable.</p> <p>"alula_data185.csv" and "alula_data160.csv" are similar to "alula_data187.csv" and "alula_data162.csv", respectively, but exclude the two duck species.</p> <p>"alula_data151.csv" and "alula_data130.csv" are similar to "alula_data185.csv" and "alula_data160.csv", respectively, but further exclude species based on female specimens.</p> <p>"consensus187.tre" is the consensus tree used for the phylogenetic comparative analyses.</p> <p>"scripts.txt" includes two R scripts for (1) calculating the migratory distance and (2) the phylogenetic comparative analyses.</p>
Data from: Agriculturally dominated landscapes reduce bee phylogenetic diversity and pollination services
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Data from: Species richness and phylogenetic diversity of seed plants across vegetation zones of Mount Kenya, East Africa
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Data from: Seasonal cycles, phylogenetic assembly, and functional diversity of orchid bee communities
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Data from: The effects of habitat management on the species, phylogenetic and functional diversity of bees are modified by the environmental context
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Data from: A total evidence approach to understanding phylogenetic relationships and ecological diversity in Selaginella subg. Tetragonostachys
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Dataset for 'Phylogenetic Diversity vs H-Index – does genetics or culture lead conservation science?'
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FIGURE 15 in Biogeographical affinity shapes relationships between ecological and phylogenetic mammal diversity and associations with their environmental correlates in the Americas
FIGURE 15. Non-stationary associations between ecological diversity (AvPD) and standard deviation in altitude (ALTstd). The maps show the spatial variation in local beta coefficients (b) for ALTstd as predictor of AvPD, obtained from the full model, i.e., including all environmental predictors, after application of geographically weighted regression separately on data for each mammal group. Regions of (+) and negative (-) associations are indicated. Maps are in Mollweide equal-area projection. Dash lines on each map indicate the location of the tropics in the Northern and Southern Hemispheres.
FIGURE 11 in Biogeographical affinity shapes relationships between ecological and phylogenetic mammal diversity and associations with their environmental correlates in the Americas
FIGURE 11. Non-stationary associations between phylogenetic diversity (AvPD) and net primary productivity (NPP). The maps show the spatial variation in local beta coefficients (b) for NPP as predictor of AvPD, obtained from the full model, i.e., including all environmental predictors, after application of geographically weighted regression separately on data for each mammal group. Regions of (+) and negative (-) associations are indicated. Maps are in Mollweide equal-area projection. Dash lines on each map indicate the location of the tropics in the Northern and Southern Hemispheres.
Fig. 5 in Strong phylogenetic constraint on transition metal incorporation in the mandibles of the hyper-diverse Hymenoptera (Insecta)
Fig. 5 Phylogenetic tree mapping the ranked Mn % for each taxon analyzed in this study. Mn was ranked as 0 = <0.1 wt%; 1 = 0.1– 1.0 wt%
Fig. 3 in Strong phylogenetic constraint on transition metal incorporation in the mandibles of the hyper-diverse Hymenoptera (Insecta)
Fig. 3 Phylogenetic tree mapping the larval feeding resource (LFR) (0 = plant, 1 = animal (at least partially)) for each taxon analyzed in this study. The circle with a picture of a herbivorous larva (the bee Andrena agilissima (Andrenidae), feeding on a pollen ball) and of a carnivorous larva (the apoid wasp Sceliphron spirifex (Sphecidae), feeding on spiders) mark the ancestral state for Hymenoptera and for Apocrita, respectively. The histogram in the lower part of the figure shows the distribution of cases for a given rank of Zn, for species with either LFR type
Fig. 9 Crangonyx parhobbsi n in A new species rises from beneath Florida: molecular phylogenetic analyses reveal cryptic diversity among the metapopulation of Crangonyx hobbsi Shoemaker, 1941 (Amphipoda: Crangonyctidae)
Fig. 9 Crangonyx parhobbsi n. sp.; holotype female, Madison Blue Spring, Madison County, Florida (UFID 051869), 7.25 mm: A, pleopod 1 (coupling hooks enlarged); B, pleopod 2 coupling hooks; C, pleopod 3 coupling hooks; D, epimera 1–3; E, uropod 1; F, uropod 2; G, uropod 3; H, telson. Scale bars 1 mm (A, D) and 0.5 mm (E–G)
Fig. 4 in A new species rises from beneath Florida: molecular phylogenetic analyses reveal cryptic diversity among the metapopulation of Crangonyx hobbsi Shoemaker, 1941 (Amphipoda: Crangonyctidae)
Fig. 4 Principal component analysis (PCA) scatterplot based on 18 morphometric variables collected from Crangonyx parhobbsi n. sp. and populations of C. hobbsi Axes PC 1 (gnathopod 2 carpus length) and PC 2 (uropod 3 outer ramus length to peduncle length) explain 68% and 7.8% of variation, respectively. CCLC Coastal Central Lowland Clade, NSRBC Northern Suwannee River Basin Clade
Fig. 2 in A new species rises from beneath Florida: molecular phylogenetic analyses reveal cryptic diversity among the metapopulation of Crangonyx hobbsi Shoemaker, 1941 (Amphipoda: Crangonyctidae)
Fig. 2 Time-calibrated multilocus phylogeny of selected members of Crangonyctoidea. Posterior probability is indicated by colored diamonds (black 0.95–1.0, gray 0.94–0.90, white 0.89–0.80), blue bars indicate the 95% HPD interval of clade age. Results of species delimitations presented right of tree. ABDG Automatic Barcode Gap Discovery; bPTP Bayesian Poisson Tree Processes; GMYC generalized
FIGURE 16 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species
FIGURE 16. Megophrys flavipunctata sp. nov. holotype: adult male (BNHS 6040: SVL 68.4 mm) in preservation: A. dorsal view; B. ventral view; C. profile view of head; D. ventral view of hand; E. ventral view of foot.
FIGURE 6 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species
FIGURE 6. Megophrys monticola lectotype: adult female (BMNH 1947.2.25.13) in preservation: A. dorsal view; B. ventral view; C. profile view of head; D. ventral view of hand; E. ventral view of foot.
FIGURE 10 in Cryptic diversity within the Megophrys major species group (Amphibia: Megophryidae) of the Asian Horned Frogs: Phylogenetic perspectives and a taxonomic revision of South Asian taxa, with descriptions of four new species
FIGURE 10. Megophrys zhangi holotype: adult male (CIB 750296: SVL 32.5 mm [Ye & Fei 1992]) in preservation: A. dorsal view; B. ventral view; C. profile view of head; D. ventral view of hand; E. ventral view of foot.
Fig. 1 a Maximum likelihood phylogenetic tree inferred from the 550 in Tracking the diversity of the flatworm genus Imbira (Platyhelminthes) in the Atlantic Forest
Fig. 1 a Maximum likelihood phylogenetic tree inferred from the 550 bp of cytochrome c oxidase subunit I gene. b ABGD analysis and c GMYC analysis. Values indicate support for each node according to the bootstrap support values> 80 and maximum posterior probabilities> 0.95,
Fig. 2 in Phylogenetic and functional diversity of African muroid rodents at different spatial scales
Fig. 2 Mean value of indices (NRI and NTI) of phylogenetic (blue) and functional (red) community structure resulting from averaging SES values obtained in all local communities belonging to the same assemblage (bioregion; SAH Saharan, SUD Sudanian, CON Congolian, SOM Somalian, ETH Ethiopian, ZAM Zambezian, SOU Southern African).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.