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Data for the Community Pandemic Accounts Project
<p>On March 10, the first case of COVID-19 was diagnosed in Michigan. Since then, there have been many changes to everyday life, such as the "Stay Home, Stay Safe" executive order urging Michiganders to limit contact with others. The Western Michigan University Libraries conducted a data collection/history project that serves to understand how our regional community has been coping and adapting to these changes. The University community’s personal memories and experiences will provide a more nuanced view into these unprecedented times, while basic demographics will serve to contextualize their experiences. Collected accounts are primarily disseminated as a publicly available de-identified dataset for researchers to better understand pandemic impacts during this time period, and as a historical artifact through the Zhang Archive in 2025 that connects names to accounts.</p> <p>This dataset contains two files, a deidentified csv and a plain text README file with variable descriptions.</p>
Bacterial community composition of bulk soil from date palm (Phoenix dactylifera) farm depend on irrigation water salinity
<p>Non-saline and saline ground water irrigation is extensively used in the arid regions of United Arab Emirates (UAE) for date palm (<em>Phoenix</em> <em>dactylifera</em>) cultivation without knowing its effect on bulk soil bacterial communities. Bulk soil acts as a supply base for microbes and nutrients that are accessed by date palm roots. We collected soil samples from date farms across UAE and performed V3-V4 16s rRNA metabarcoding analysis to understand how bulk soil bacterial diversity and communities respond to irrigation water sources (non-saline and saline groundwater irrigation). There was no significant variation in bulk bacterial diversity (Shannon diversity, richness as well as evenness). But bulk bacterial communities differed between irrigation water sources and irrigation water electrical conductivity was the significant factor that explained a part of community variation. Out of total 5089 OTUs, saline bulk soil harbored only 21.3% of total OTUs compared to 31.5% OTUs in non-saline bulk soil, while 47.15% OTUs shared between both types of irrigation. Proteobacteria abundance was higher in saline bulk soil, while Actinobacteriota abundance was enhanced in non-saline bulk soil. Similar selection was observed at genus level, wherein saline bulk soil showed increase in abundance of <em>Subgroup_10, Nitrospira </em>and<em> Mycobacterium</em>, whereas <em>Microvirga, Ammoniphilus, Nitrospira</em> and <em>Lysinibacillus </em>were elevated in non-saline bulk soil. Saline (<em>Novibacillus</em> and <em>Bauldea</em>) and non-saline bulk soil (<em>Microvirga</em>, <em>Marmoricola</em>, <em>Domibacillus</em>, <em>Oceanobacillus</em>, <em>Bhargavaea</em> and <em>Solirubrobacter</em>) showed significant selection of indicator taxa (P < 0.05). This indicate that bacterial communities colonizing bulk soil differ depending on irrigation water source and it is affected by irrigation water EC.</p>
Data and code from: Geomorphological processes shape plant community traits in the Arctic
<p><strong>Aim</strong></p> <p>Geomorphological processes profoundly affect plant establishment and distributions, but their influence on functional traits is insufficiently understood. Here, we unveil trait-geomorphology relationships in Arctic plant communities.</p> <p> </p> <p><strong>Location</strong></p> <p>High-Arctic Svalbard, low-Arctic Greenland, and sub-Arctic Fennoscandia.</p> <p> </p> <p><strong>Time period</strong></p> <p>2011-2018</p> <p> </p> <p><strong>Major taxa studied</strong></p> <p>Vascular plants</p> <p> </p> <p><strong>Methods</strong></p> <p>We collected field-quantified data on vegetation, geomorphological processes, microclimate, and soil properties from 5280 plots and 200 species across the three Arctic regions. We combined these data with database trait records to relate local plant community trait composition to dominant geomorphological processes of the Arctic, namely cryoturbation, deflation, fluvial processes, and solifluction. We investigated the relationship between plant functional traits and geomorphological processes using hierarchical generalised additive modelling.</p> <p> </p> <p><strong>Results</strong></p> <p>Our results demonstrate that community-level traits are related to geomorphological processes, with cryoturbation most strongly influencing both structural and leaf economic traits. These results were consistent across regions, suggesting a coherent biome-level trait response to geomorphological processes.</p> <p> </p> <p><strong>Main conclusions</strong></p> <p>The results indicate that geomorphological processes shape plant community traits in the Arctic. We provide empirical evidence for the existence of generalisable relationships between plant functional traits and geomorphological processes. The results indicate that the relationships are consistent across these three distinct tundra regions and that geomorphological processes should be considered in future investigations of functional traits.</p> <p> </p> <p>Kemppinen, Niittynen, Happonen, le Roux, Aalto, Hjort, Maliniemi, Karjalainen, Rautakoski & Luoto. Provisionally accepted. Geomorphological processes shape plant community traits in the Arctic. Global Ecology and Biogeography.</p> <p>These are the data and code from Kemppinen et al. (Provisionally accepted).</p>
A whole-ecosystem experiment reveals flow-induced shifts in a stream community.
<p>This data set is the source for the modeling of a BACI design for experimental manipulation is a stream reach to assess changes in the stream community with emphasis on benthic algae and cyanobacteria.</p>
T a b l e 4 in Changes In The Trophic Structure Of The Vertebrate Predator Community In The Cold Season In Belarussian Paazerje (Northern Belarus) With Emphasis On Depopulation Of The Wild Boar, Sus Scrofa (Artiodactyla, Suida)
T a b l e 4. Dietary overlaps (the Morisita's index) between vertebrate predators in the cold season in coniferous-small-leaved forests of Belarussian Paazerje, Northern Belarus, upper right corner — before a depopulation of the Wild Boar (1982–2011), bottom left corner — aft er a large-scale depopulation of the Wild Boar (2013–2019)
Fig. 2 in Changes In The Trophic Structure Of The Vertebrate Predator Community In The Cold Season In Belarussian Paazerje (Northern Belarus) With Emphasis On Depopulation Of The Wild Boar, Sus Scrofa (Artiodactyla, Suida)
Fig. 2. Th e Golden and White-tailed Eagles feed regularly on carrion and physical interference takes place quite often.
Fig. 1 in Changes In The Trophic Structure Of The Vertebrate Predator Community In The Cold Season In Belarussian Paazerje (Northern Belarus) With Emphasis On Depopulation Of The Wild Boar, Sus Scrofa (Artiodactyla, Suida)
Fig. 1. Dietary similarity of 17 vertebrate predators in the cold season in Belarussian Paazerje, 1972–2012.
Fig. 4 in Changes In The Trophic Structure Of The Vertebrate Predator Community In The Cold Season In Belarussian Paazerje (Northern Belarus) With Emphasis On Depopulation Of The Wild Boar, Sus Scrofa (Artiodactyla, Suida)
Fig. 4. Dietary similarity of 10 vertebrate predators in the cold season in Belarussian Paazerje, 2013–2019.
Fig. 1 in Dynamics Of Mouse-Like Rodent Communities In Anthropogenically Disturbed Territories Of The Southeast Of Western Siberia (Kemerovo Region, Russia)
Fig. 1. The dynamics of similarity of small mammal populations in deforested zones compared to the initial population in taiga (using the Czekanowsky-SØrensen coefficient calculated for species' percentage in the community).
Fig. 2 in Helminths Of Antarctic Rockcod Notothenia Coriiceps (Perciformes, Nototheniidae) From The Akademik Vernadsky Station Area (Argentine Islands, West Antarctica): New Data On The Parasite Community
Fig. 2. Average number of cysts of Corynosoma spp. in the body cavity of Notothenia coriiceps of five size groups.
Fig. 1 in Helminths Of Antarctic Rockcod Notothenia Coriiceps (Perciformes, Nototheniidae) From The Akademik Vernadsky Station Area (Argentine Islands, West Antarctica): New Data On The Parasite Community
Fig. 1. Prevalence (in %) and mean intensity of helminth species found in Notothenia coriiceps in the waters surrounding the Ukrainian Antarctic station "Akademik Vernadsky" in 2014–2015.
Fig. 3 in Communities Of Ditylenchus Destructor Satellite Species Of Nematodes In Infected Potato Tubers: Species Composition Of Phytonematode Complex And The Structure Of Their Infracommunities
Fig. 3. The dynamics of the ratio of the total number of various trophoecological group nematodes during the disease of potato tubers caused by D. destructor.
Fig. 1 in Communities Of Ditylenchus Destructor Satellite Species Of Nematodes In Infected Potato Tubers: Species Composition Of Phytonematode Complex And The Structure Of Their Infracommunities
Fig. 1. Ditylenchus destructor (Thorne, 1945) potato nematode: A — female; B — head end of the female; C — spicules; D — male; E — head end of the male; F, G — lateral field by the Thorne, 1945.
Fig. 5 in Communities Of Ditylenchus Destructor Satellite Species Of Nematodes In Infected Potato Tubers: Species Composition Of Phytonematode Complex And The Structure Of Their Infracommunities
Fig. 5. Occurrence of various species of phytonematodes during successive stages of the pathological process.
Fig. 2 in Population Densities And Community Structure Of Birds Breeding In A Suburban Wooded Grassland In The Highveld Of Lesotho
Fig. 2. Numbers (right axis; dot or square signs) of species (A), all breeding pairs (B), and breeding pairs of selected bird species (C: Ss — Streptopelia senegalensis, Sc — Streptopelia capicola; D: RwS — Onychognathus morio, ES — Sturnus vulgaris; E — Passer griseus; F — Ploceus velatus; G — Columba guinea, H — Lanius collaris) in relation to the rainfall (columns; in mm per annum; left axis).
Fig. 3 in Gastrointestinal Parasite Community In A New Population Of The Przewalski'S Horse (Equus Ferus Przewalskii) In The Orenburg State Reserve, Russia
Fig. 3. Distribution of strongylid species from the Przewalski's horses in Pre-Urals Steppe, Orenburg State Reserve, on ten prevalence classes.
Fig. 1 in Possible Ways Of Development Of The Breeding Bird Communities Of The Lower Dnipro
Fig. 1. The active coastal erosion and the initial stage of formation of the sandy beach (the upper reaches of the Kakhovka Reservoir, 2012).
Fig. 1 in Taxonomic Structure Of Nematode Communities Of Epiphytic Mosses In Green Plantations Of Chernihiv, Ukraine
Fig. 1. Taxonomic diversity of nematodes belonging to different orders that inhabit epiphytic mosses in green plantations of Chernihiv: 1 — Enoplida; 2 — Triplonchida; 3 — Dorylaimida; 4 — Mononchida; 5 — Monhysterida; 6 — Plectida; 7 — Rhabditida; 8 — Tylenchida.
Fig. 2 in Taxonomic Structure Of Nematode Communities Of Epiphytic Mosses In Green Plantations Of Chernihiv, Ukraine
Fig. 2. Structure of nematode fauna of epiphytic mosses in green plantations of Chernihiv according to the frequency of occurrence.
Fig. 3 in Spatial Patterns Of Bird Communities Of The Lower Dnieper Sands During The Breeding Season: Differentiation Factors
Fig. 3. The abundance (the mean number of individuals per sample) of campophilous and dendrophilous birds in groups of samples A (Clusters I–IV) and B (Clusters V–VI). N o t e. The central line represents median, the lower and upper limits of the rectangle — the first and third quartile respectively, "whiskers" — ± 1.5 of interquartile range; circles — outliers.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.