Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,620
datasets available to search
ShareScore release 0.9.0
Dataset results
2,620 results for “Molecular Phylogeny”
FIGURE 3 in No longer supple? Molecular phylogeny suggests generic reassignment of Lygosoma ashwamedhi (Sharma, 1969) (Reptilia: Scincidae)
FIGURE 3. Head of Eutropis ashwamedhi comb. nov. (NHM.OU.REP.4–2010). A&B) Dorsal view, C&D) Ventral view, and E&F) Lateral view. See text for abbreviations used for scales.
FIGURE 2 in Morphology and molecular phylogeny of a new freshwater ciliate Urosomoida sejongensis n. sp. (Ciliophora, Sporadotrichida, Oxytrichidae) from King George Island, Antarctica
FIGURE 2. Photomicrograph of Urosomoida sejongensis n. sp. in vivo (A–J) and after protargol impregnation (K, L). A, B. Ventral and dorsal view. Arrow denotes contractile vacuole. C, D. Lateral views. E. Dorsal view showing contractile vacuole (arrow) with dorsal bristles (DB). F. Ventral view with overall cirral arrangement. G. Ventral view with nuclear apparatus and ring-shaped structures (inserts). H. Ventral view of oral apparatus. I. Nuclear apparatus showing 1 micronucleus between 2 macronuclear nodules. J. Cortical granules (arrowhead). K, L. Dorsal and ventral view of holotype specimen, respectively. AZM—adoral zone of membranelles; BC—buccal cirrus; CC—caudal cirri; DK—dorsal kineties; DM—dorsomarginal kinety; FC—frontal cirri; FVC—frontoventral cirri; LMR—left marginal cirral row; Ma—macronuclear nodules; Mi—micronucleus; PTVC—pretransverse ventral cirri; PVC—postoral ventral cirri; RMR—right marginal cirral row; TC—transverse cirri. Scale bars: 50 µm (in A, E, K), 5 µm (in I, J).
FIGURE 3 in Morphology and molecular phylogeny of a new freshwater ciliate Urosomoida sejongensis n. sp. (Ciliophora, Sporadotrichida, Oxytrichidae) from King George Island, Antarctica
FIGURE 3. Majority consensus tree of Bayesian inference (BI) using SSU rDNA sequences. On interior branches, posterior probabilities of BI and bootstrap values of maximum likelihood (ML) are represented, respectively.
FIGURE 8 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 8. Triops multifidus sp. nov. A, endopodite and 5th endite of 2nd trunk limb of the holotype (male), anterior view. B, endopodite of 2nd trunk limb of a female of 2.3 mm telson width (from the type locality), anterior view. C, endopodite of 6th trunk limb of a male of 2.3 mm telson width (from the type locality), anterior view. D, endopodite and 5th endite of 2nd trunk limb of a male of 2.2 mm telson width (from population 10), anterior view. E, second antenna of a second instar larva (from the type locality) as seen in a shed exuvium, ventral view. F, general aspect of adult male (showing a specimen of population 13). G, variation in the shape of the nuchal organ: examples (from left to right) from specimen of 2.2 (population 10) 1.8 (population 12, female) 2.4 (holotype) and 2.2 mm telson width (population 8). H, telson of the holotype, dorsal view. I, telson of a male of 2.3 mm telson width (from the type locality), lateral view.
FIGURE 3 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 3. Phylogenetic relationships of A, Triops samples obtained in a combined analysis of three molecular markers (12S, 16S, 28S) and B, western Moroccan Triops granarius samples as inferred from 12S sequences (best scoring trees obtained in RAxML are shown). ML bootstrap support/ Bayesian posterior probabilities are given for selected nodes. Provisional taxon labels of previously discovered lineages correspond to those used in Korn et al. (2013). Symbols correspond to those used in Fig. 1.
FIGURE 7 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 7. Triops maximus sp. nov. A, carapace of the holotype (male), right lateral view. B, second maxilla of the holotype, anterior view. C, detail of the 1st trunk limb of the holotype, anterior view.
FIGURE 9 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 9. Triops multifidus sp. nov. A, carapace of the holotype (male), right lateral view. B, second maxilla of the holotype, anterior view. C, detail of the 1st trunk limb of the holotype, anterior view (note that the epipodite is missing in this sample, possibly due to injury).
FIGURE 6 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 6. Triops maximus sp. nov. A, second antenna of a second instar larva (from the type locality) as seen in a shed exuvium, ventral view. B, general aspect of adult male (showing a specimen of population 7). C, variation in the shape of the nuchal organ: examples from specimen of 3.0 (above, left: population 2) 2.3 (below, left: population 18) and 2.2 mm telson width (center, right: holotype). D, endopodite of 6th trunk limb of a male of 2.3 mm telson width (from the type locality), anterior view. E, endopodite and 5th endite of 2nd trunk limb of the holotype (male), anterior view. F, telson of the holotype, dorsal view. G, telson of a male of 2.3 mm telson width (population 18), lateral view.
FIGURE 2 in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 2. Schematic drawing of A, a detail of the right lateral margin of the telson of a Triops granarius specimen in dorsal view, showing how the length of the largest furcal spine was measured (dotted line), and B, the endopodite of the second trunk limb in anterior view, demonstrating how the length of the endopodite was measured (dotted line). C, a detail of the row of digging spines positioned at the margin of the endopodite showing three examples of length measurements (dotted lines; note that in the present example the largest spine cannot be identified easily so that several rather large spines have to be measured in order to obtain a value for the length of the largest spine) and the position of subsidiary lines used for measurements of spine lengths (dashed lines). D, the distal part of the endopodite showing the distal claw and three of the digging spines. The point where the dashed line (drawn from the base of the distal claw) meets the dotted line (median line of the distal claw) was used as the starting point for length measurements of the endopodite (in the present study the base of the distal claw was defined as the point where the distalmost digging spine diverges from the endopodite). Grey bars (directed approx. in a right angle to measured lines) indicate where measured lines start and end. Abbreviations: C, distal claw; DS, digging spines; SP, largest furcal spine; SPL, length of largest furcal spine; TE, telson; F, furcal ramus.
FIGURE 1. A in Molecular phylogeny, morphology and taxonomy of Moroccan Triops granarius (Lucas, 1864) (Crustacea: Notostraca), with the description of two new species
FIGURE 1. A, map indicating the geographical position of the study area (marked in black). B, map showing the geographical distribution of studied populations of Triops granarius. Symbols used to mark study sites refer to phylogenetic lineages (see Table 1, Fig. 3; population no. 6 was determined morphologically by DFA in this study). Open square: 'Triops granarius 8'; filled asterisk: 'Triops granarius 10'.
FIGURE 1 in New molecular phylogeny of Lucinidae: increased taxon base with focus on tropical Western Atlantic species (Mollusca: Bivalvia)
FIGURE 1. Combined gene tree for Lucinidae based on sequences from three genes (18S rRNA, 28S rRNA and cyt b), using Bayesian inference as implemented by MrBayes. Support values are posterior probabilities (PP). Codakiinae and Lucininae expanded in Figs 2 and 3. See Table 1 for sample details.Western Atlantic species in red. Scale is number of substitutions per site. Locality codes used on trees. ABD—Abu Dhabi; ANG—Angola; BD—Bermuda; BOC—Bocas, Panama; BR—Broome, Australia; CAL—California; CB –Chesterfield Bank; COSRIC West Costa Rica; CR—Croatia; DMP—Dampier, Australia; DEV—Devon, UK; FK—Florida Keys; FR—France; GD—Guadeloupe; HK—Hong Kong; JPN– Japan; KK—Kungkraben Bay, Thailand; LH—Lord Howe Island; LI– Lizard Island, Australia; MAD—Madagascar; MADANG—Madang, Papua New Guinea; MAUR– Mauritius; MB—Moreton Bay, Australia; MEX—West Mexico; NC—New Caledonia; NIG—Nigeria; OK— Okinawa; PAN– Panglao, Philippines; PNG– Papua New Guinea; ROD—Rodrigues; RUK—Ryukyus, Japan; SAF—Safaga, Red Sea; SGP—Singapore; SOL—Solomon Sea; SYD—Sydney, Australia; TCB—Tin Can Bay, Australia; TIM—East Timor; TJ—Tjärnö, Sweden; TUN—Djerba, Tunisia; VAN—Vanuatu; VEN—Venezuela; UK—England.
FIGURE 4 in New molecular phylogeny of Lucinidae: increased taxon base with focus on tropical Western Atlantic species (Mollusca: Bivalvia)
FIGURE 4. Single gene tree for Lucinidae based on cyt b sequences, using Bayesian inference as implemented by MrBayes. Support values are posterior probabilities (PP); branches with PP <50% were collapsed. Western Atlantic species in red. See Table 1 for sample details. Monitilorinae and Lucininae expanded in Fig. 5.
PLATE 4 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
PLATE 4. Photographs of Impatiophila species (part 4). A, epubescens (holotype ♂, #00280); B, curvivalva (holotype ♂, #00089); C, magnimaculata (paratype ♂, #00544); D, chiasmosternata (paratype ♂, #00106); E, furcatosternata (holotype ♂, #00272); F, acutivalva (holotype ♂, #00282); G, pipa (holotype ♂, #00202); H, truncivalva (holotype ♂, #00302).
FIGURE 50 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
FIGURE 50. Impatiophila bifurcata Fu & Gao, sp. nov. Adult male (holotype, #01149) and female (paratype, #001127): A, periphallic organs (caudolateral view); B, caudoventral part of epandrium; C, surstylus (caudal view); D, tenth sternite; E, phallic organs (dorsal view); F, phallic organs (lateral view); G, oviscapt (lateral view); H, oviscapt (ventral view).
PLATE 3 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
PLATE 3. Photographs of Impatiophila species (part 3). A, yangi (holotype ♂, #01566); B, forcipivlava (holotype ♂, #00309); C, trifurcatosternata (holotype ♂, #00551); D, latipennata (holotype ♂, #00604); E, bifasciata (holotype ♂, #02572); F, quadrangulata (holotype ♂, #02574); G, pulla (holotype ♂, #01126); H, motuoensis (holotype ♂, #00273).
FIGURE 51 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
FIGURE 51. Impatiophila maoershanensis Fu & Gao, sp. nov. Adult male (holotype, #00175) and female (paratype, #00176): A, periphallic organs (caudolateral view); B, caudoventral part of epandrium; C, tenth sternite; D, phallic organs (dorsal view); E, phallic organs (lateral view); F, oviscapt (lateral view); G, oviscapt (ventral view).
FIGURE 47 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
FIGURE 47. Impatiophila pentamaculata Fu & Gao, sp. nov. Adult male (holotype, #02558) and female (paratype, #02559): A, periphallic organs (caudolateral view); B, caudoventral part of epandrium; C, surstylus (caudal view); D, tenth sternite; E, phallic organs (dorsal view); F, phallic organs (lateral view); G, oviscapt (lateral view); H, oviscapt (ventral view).
FIGURE 44 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
FIGURE 44. Impatiophila menghaiensis Fu & Gao, sp. nov. Adult male (paratype, #00397) and female (paratype, #01440): A, periphallic organs (caudolateral view); B, caudoventral part of epandrium; C, surstylus (caudal view); D, tenth sternite; E, phallic organs (dorsal view); F, phallic organs (lateral view); G, oviscapt (lateral view); H, oviscapt (ventral view).
FIGURE 42 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
FIGURE 42. Impatiophila pipa Fu & Gao, sp. nov. Adult male (holotype, #00202) and female (paratype, #01407): A, periphallic organs (caudolateral view); B, caudoventral part of epandrium; C, surstylus (caudal view); D, tenth sternite; E, phallic organs (dorsal view); F, phallic organs (lateral view); G, oviscapt (lateral view); H, oviscapt (ventral view).
PLATE 7 in A new genus of anthophilous drosophilids, Impatiophila (Diptera, Drosophilidae): morphology, DNA barcoding and molecular phylogeny, with descriptions of thirty-nine new species
PLATE 7. Spermathecae of Impatiophila (part 2). A, quadrangulata (paratype, #02575); B, motuoensis (paratype, #00274); C, epubescens (paratype, #00279); D, curvivalva (paratype, #00097); E, magnimaculata (paratype, #01553); F, chiasmosternata (paratype, #00090); G, furcatosternata (paratype, #00275); H, acutivalva (paratype, #00549); I, pipa (paratype, #01407); J, truncivalva (paratype, #00303), K, menghaiensis (paratype, #01125); L, unicolorata (holotype, #01439); M, oblongata (paratype, #02577); N, pentamaculata (paratype, #02559); O, menba (paratype, #00473); P, securiformis (paratype, #00277); Q, bifurcata (paratype, #01127); R, maoershanensis (paratype, #00176).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.