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727 results for “Molecular taxonomy”
Fig. 5. A in A dated molecular perspective of eucalypt taxonomy, evolution and diversification
Fig. 5. A tanglegram showing the various position of eucalypt groups in the nuclear and plastid analyses. Numbers at nodes represent the bootstrap value returned in the maximum-likelihood analysis of the two datasets.
Fig. 1 in A dated molecular perspective of eucalypt taxonomy, evolution and diversification
Fig. 1. The modern distribution of the seven genera included in Eucalypteae, highlighting the widespread Eucalyptus, the tropical, subtropical, and monsoonal distribution of Angophora and Corymbia, and the range-restricted rainforest genera. Distribution is represented by herbarium records from the Australasian Virtual Herbarium and Global Biodiversity Information Facility (GBIF). A. The rainforest genera Allosyncarpia, Arillastrum, Eucalyptopsis and Stockwellia occur only in northern Australia, New Guinea and New Caledonia. B. Angophora is found only on the eastern coast of Australia. C. Corymbia occurs in Australia and New Guinea. D. Eucalyptus occurs in Australia, New Guinea, Timor, Indonesia and the Philippines.
Fig. 6 in Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca)
Fig. 6 Resting-egg size in populations of Triops cancriformis and main lineages of T. mauritanicus (C = 'Cádiz' lineage; G = 'Gitanilla' lineage; MM = T. m. mauritanicus; MS = T. m. simplex; P = 'Portuguese' lineage; S. I = 'S.Iberian' lineage; T.c.c. = Triops c. cancriformis). Eggs from populations 082, 084, 058, 108–111, 119, 120–123, 130 and some eggs from population 103 obtained from lab cultures, remaining samples extracted from field-collected sediments; for details on populations see Table A1. Error bars indicate 95% confidence intervals
Fig. 5 in Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca)
Fig. 5 Unrooted NJ tree of squared Mahalanobis distances between group centroids obtained from discriminant function analysis of morphological data on adult males of all known Triops mauritanicus lineages. Abbreviations: T.m.m. = T. m. mauritanicus; T.m.s = T. m. simplex
Fig. A1 in Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca)
Fig. A1 ML tree based on COI sequences (RAxML program, setting 'estimate proportion of invariable sites'; best evolutionary model obtained by Modeltest was TrN+I+G, selected by AIC). ML bootstrap support (obtained with RAxML) given for selected branches. Outgroups [GenBank sequences of Lepidurus apus (accession number EF189669), L. arcticus (AF209067), L. couesii (DQ310622), L. lemmoni (GQ144447), Triops longicaudatus (DQ310623 and GQ144444), T. australiensis (DQ889135), T. granarius (GQ144446)] removed for clarity. Samples labelled, as applicable, with short names of main phylogenetic lineages (Table A1) followed by museum specimen tissue voucher numbers (MTD-TW; sequences submitted to GenBank, acc. nrs. FN691430–FN691444) or by GenBank accessions, or labelled with GenBank accessions containing numbers but no lineage data (samples with GenBank taxon labels apparently resulting from erroneous species identification, i.e. samples submitted to GenBank with invalid species names). Abbreviations: T.c. = Triops cancriformis; T.m. = T. mauritanicus
Fig. 2 in Molecular tools for resolving Merodon ruficornis group (Diptera, Syrphidae) taxonomy
Fig. 2 Bayesian tree of the Merodon ruficornis species group based on combined 3′ and 5′ COI sequences. Bayesian posterior probabilities are indicated near nodes
Fig. 5 in Molecular tools for resolving Merodon ruficornis group (Diptera, Syrphidae) taxonomy
Fig. 5 Bayesian trees of the Merodon ruficornis species group based on COI + 28S + ITS2 sequences. Bayesian posterior probabilities are indicated near nodes. a Nuclear region sequences without gaps. b Nuclear region sequences with binary coded gaps
Fig. 3 in Molecular tools for resolving Merodon ruficornis group (Diptera, Syrphidae) taxonomy
Fig. 3 Bayesian trees of the Merodon ruficornis species group based on 28S rRNA gene sequences. Bayesian posterior probabilities are indicated near nodes. a Sequences without gaps. b Sequences with binary coded gaps
FIGURE 1 in Species of the genus Eurydema (Hemiptera: Heteroptera: Pentatomidae) in Far East Asia: An integrated approach using morphological, molecular, and data crossing analyses for taxonomy
FIGURE 1. Eurydema species in Far East Asia distinguished by the traditional key (see introduction). A, E. pulchra (exocorium with a black spot, red coloration); B, E. dominulus (exocorium entirely pale); C, E. gebleri (legs partly pale; pronotum with 6 dark spots); D, E. rugosa (legs entirely black; pronotum with 2 dark spots). E, E. pulchra (exocorium with a black spot, yellow coloration); F, E. dominulus or E. pulchra (exocorium with a small dark spot); G, E. gebleri or E. rugosa (legs partly pale; pronotum with 2 dark spots); H, E. gebleri or E. rugosa (legs partly pale; pronotum with fused dark spots). A–E, Eurydema species possibly identified by the traditional key to species (see introduction); F–H, examples of color variation in each species leading to misidentification or the lack of identification, scale: 1mm.
FIGURE 4 in Species of the genus Eurydema (Hemiptera: Heteroptera: Pentatomidae) in Far East Asia: An integrated approach using morphological, molecular, and data crossing analyses for taxonomy
FIGURE 4. Interspecific copulation and life cycle of the gebleri–group. A, copulating scene (the upper species is E. gebleri (female) and the lower one is E. rugosa (male) as determined by the traditional key); B, 1st instars and eggs; C, 2nd instars; D, 3rd and 4th instars; E, final instars; F, mixed stage nymphs and adult.
Figure 6 in Phylogeny and taxonomy of European funnel-web spiders of the Tegenaria-Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data
Figure 6. Bayesian tree of single analysis of 28S. Posterior probabilities of clades are expressed in percentages and given above branches. Clade support (> 50) from the resampling method (jack-knife, 1000 replications) based on parsimony analysis with implied weighting (K = 6) is given below the branches. Abbreviations: GR, Greece; IT, Italy.
FIGURE 26 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 26. Boophis luciae sp. nov. in life: (A) dorsolateral view and (B) ventral view of male from Ranomena; (C) dorsolateral view and (B) ventral view of female from Ranomafana region showing mature eggs through transparent skin.
FIGURE 11 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 11. Spectrograms and waveforms of calls of Boophis entingae sp. nov.: (A) advertisement call from Manongarivo Special Reserve (recorded on 2 February 2003, air temperature 22°C); (B) distress call from Montagne d'Ambre National Park (recorded on 14 March 1994, air temperature 21.2°C).
FIGURE 20 in Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis 2383
FIGURE 20. Spectrograms and waveforms of advertisement calls: (A) section of advertisement call of Boophis sandrae sp. nov. from near Vohiparara, Ranomafana National Park (recorded on 28 January 2004, air temperature 20–21°C); (B) advertisement call of Boophis elenae from Maharira Forest, Ranomafana National Park (recorded on 24 January 2004, air temperature app. 18.4°C).
Figure 6 in Molecular taxonomy and population structure of the rough-toothed dolphin Steno bredanensis (Cetartiodactyla: Delphinidae)
Figure 6. Phylogenetic neighbour-joining (NJ) tree of delphinid mitogenomes. Numbers above branches indicate bootstrap/ posterior probability values>75% (NJ, Kimura two-parameter/Bayesian, Hasegawa-Kishino-Yano + gamma + invariant sites).
Figure 3 in Morphological and molecular taxonomy of a new Daptonema (Nematoda, Xyalidae) with comments on the systematics of some related taxa
Figure 3. Scanning electron micrographs of Daptonema matrona sp. nov. male: A, anterior region; B, amphid; C, tail; D, external structure of the gubernuculum.
Figure 2 in Morphological and molecular taxonomy of a new Daptonema (Nematoda, Xyalidae) with comments on the systematics of some related taxa
Figure 2. Photographs of Daptonema matrona sp. nov. holotype: A, habitus; B, anterior region; C, amphid; D, buccal cavity; E, spicule; F, tail.
Figure 6 in Morphological and molecular taxonomy of a new Daptonema (Nematoda, Xyalidae) with comments on the systematics of some related taxa
Figure 6. Maximum parsimony (stricto consensus) topology based on 18S sequences from 25 specimens of Xyalidae and three outgroups (Monhystera riemanni, Sphaerolaimus hirsute, and Spirinia parasitifera). Numbers are bootstrap and jack-knife values (10 000 replicates), respectively, both with branch support over 50%.
Figure 11 in Molecular taxonomy reveals an overlooked cryptic species of the tiger moth genus Murzinowatsonia Dubatolov (Lepidoptera, Arctiinae) from Sichuan, China
Figure 11. The Maximum likelihood tree from analysis of the COI5P sequences of Murzinowatsonia amelija sp. nov. and related species. Numbers to the left of each node are SH-aLRT support (%)/aBayes support/ultrafast bootstrap support (%).
FIGURE 4 in Morphological and molecular characterization of the Makran Glossogobius cf. giuris (Teleostei: Gobiidae) and the Glossogobius giuris species complex taxonomy
FIGURE 4. MJ haplotype network of the mtDNA haplotypes observed in the Glossogobius giuris species complex and G. aureus. Circle sizes depict proportions of haplotypes; the smallest corresponds to one. Small black circles correspond to missing/ hypothetical haplotypes. Hatch marks/numbers represent mutational steps between neighboring haplotypes/lineages.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.