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Plate 30 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 30 - Distribution of: A Eurysternus contractus Génier, 2009 B Eurysternus foedus Guérin-Méneville, 1830 C Eurysternus hamaticollis Balthasar, 1939 D Eurysternus hypocrita Balthasar, 1939.
Plate 13 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 13 - Distribution of: A Canthon (Glaphyrocanthon) ohausi Balthasar, 1939, stat. n. B Canthon (Glaphyrocanthon) pallidus Schmidt, 1922 C Canthon (Glaphyrocanthon) politus Harold, 1868 D Canthon (Glaphyrocanthon) quadriguttatus (Olivier, 1789).
Plate 21 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 21 - Distribution of: A Deltochilum (Calhyboma) tessellatum Bates, 1870 B Deltochilum (Deltochilum) orbiculare Lansberge, 1874 C Deltochilum (Deltochilum) rosamariae Martínez, 1991 D Deltochilum (Deltohyboma) aequinoctiale (Buquet, 1844).
Plate 25 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 25 - Distribution of: A Dichotomius (Dichotomius) divergens (Luederwaldt, 1923) B Dichotomius (Dichotomius) mamillatus (Felsche, 1901) C Dichotomius (Dichotomius) monstrosus (Harold, 1875) D Dichotomius (Dichotomius) ohausi (Luederwaldt, 1923).
Plate 24 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 24 - Distribution of: A Dendropaemon (Crassipaemon) morettoi Génier & Arnaud, 2016 B Dendropaemon (Glaphyropaemon) angustipennis Harold, 1869 C Dichotomius (Dichotomius) compressicollis (Luederwaldt, 1929) D Dichotomius (Dichotomius) cotopaxi (Guerin-Meneville, 1855).
Plate 29 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 29 - Distribution of: A Dichotomius (Luederwaldtinia) simplicicornis (Luederwaldt, 1935) B Dichotomius (Selenocopris) fonsecae (Luederwaldt, 1926) C Eurysternus caribaeus (Herbst, 1789) D Eurysternus cayennensis Castelnau, 1840.
Plate 38 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 38 - Distribution of: A Ontherus (Caelontherus) trituberculatus Balthasar, 1938 B Ontherus (Ontherus) azteca Harold, 1869 C Ontherus (Ontherus) edentulus Génier, 1996 D Ontherus (Ontherus) pubens Génier, 1996.
Plate 28 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 28 - Distribution of: A Dichotomius (Dichotomius) satanas angustus (Luederwaldt, 1923) B Dichotomius (Luederwaldtinia) fortepunctatus (Luederwaldt, 1923), revalidated name C Dichotomius (Luederwaldtinia) hempeli (Pereira, 1942) D Dichotomius (Luederwaldtinia) problematicus (Luederwaldt, 1923).
Plate 37 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 37 - Distribution of: A Ontherus (Caelontherus) magnus Génier, 1996 B Ontherus (Caelontherus) pilatus Génier, 1996 C Ontherus (Caelontherus) politus Génier, 1996 D Ontherus (Caelontherus) tenustriatus Génier, 1996.
Plate 40 from: Chamorro W, Marin-Armijos D, Asenjo A, Vaz-De-Mello FZ (2019) Scarabaeinae dung beetles from Ecuador: a catalog, nomenclatural acts, and distribution records. ZooKeys 826: 1-343. https://doi.org/10.3897/zookeys.826.26488
Plate 40 - Distribution of: A Onthophagus (Onthophagus) coscineus Bates, 1887 B Onthophagus (Onthophagus) curvicornis Latreille, 1811 C Onthophagus (Onthophagus) cyanellus Bates, 1887 D Onthophagus (Onthophagus) dicranius Bates, 1887.
Replication Package for "Catching Smells in the Act: A GitHub Actions Workflow Investigation" - Thesis
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THE REALIZATION OF TYPES OF SPEECH ACT AT LANGUAGE LEVELS
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STUDY OF THE PROCESS OF OBTAINING A NEW COMPLEX-ACTING DEFOLIANT
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The TCA (TriCarboxylic Acid) Cycle/Citric Acid Cycle/Krebs cycle acts as a central metabolic hub
<p>Diagram depicting the TCA (TriCarboxylic Acid) Cycle/Citric Acid Cycle/Krebs cycle and its relation to a variety of macromolecules</p>
Data from: Cis- and trans-acting genetic factors contribute to heterogeneity in the rate of crossing over between the Drosophila simulans clade species
In the genus Drosophila, variation in recombination rates has been found within and between species. Genetic variation for both cis- and trans-acting factors has been shown to affect recombination rates within species, but little is known about the genetic factors that affect differences between species. Here we estimate rates of crossing over for seven segments that tile across the euchromatic length of the X chromosome in the genetic backgrounds of three closely related Drosophila species. We first generated a set of Drosophila mauritiana lines each having two semi-dominant visible markers on the X chromosome and then introgressed these doubly marked segments into the genetic backgrounds of its sibling species, D. simulans and D. sechellia. Using these 21 lines (7 segments, 3 genetic backgrounds) we tested whether recombination rates within the doubly marked intervals differed depending on genetic background. We find significant heterogeneity among intervals and among species backgrounds. Our results suggest that a combination of both cis- and trans-acting factors have evolved among the three D. simulans clade species and interact to affect recombination rate.
Calpain DEK1 acts as a developmental switch gatekeeping cell fate transitions
<p>This is the supplementary data archive for our study showing that:</p> <p><em><strong>Calpain DEK1 acts as a developmental switch gatekeeping cell fate transitions</strong></em></p> <p><strong>Abstract:</strong> Calpains are cysteine proteases that control cell fate transitions. Although calpains are viewed as modulatory proteases displaying severe, pleiotropic phenotypes in eukaryotes, human calpain targets are also directed to the N-end rule degradatory pathway. Several of these destabilized targets are transcription factors, hinting at a gene regulatory role. Here, we analyze the gene regulatory networks of <em>Physcomitrium</em> <em>patens</em> and characterize the regulons that are deregulated in <em>DEK1</em> calpain mutants. Predicted cleavage patterns of regulatory hierarchies in the five DEK1-controlled subnetworks are consistent with the gene’s pleiotropy and the regulatory role in cell fate transitions targeting a broad spectrum of functions. Network structure suggests DEK1-gated sequential transition between cell fates in 2D to 3D development. We anticipate that both our method combining phenotyping, transcriptomics and data science to dissect phenotypic traits and our model explaining the calpain’s role as a switch gatekeeping cell fate transitions will inform biology beyond plant development.</p>
Figure 1 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
Figure 1 - Automated registration process and validation of finally published data and metadata between publisher and registry. Abbreviation on logos: IPNI - International Plant Name Index, IF - Index Fungorum.
The mitochondrial protease OMA1 acts as a metabolic safeguard upon nuclear DNA damage
<p>The provided Dataset contains the liquid-chromatography mass spectrometry (LC-MS) raw files (3 zipped files containing the Thermo .raw files) and one zipped file containing three tables extracted containing the peak information (Compound ID, expected RT (min), Filename, Injection Volume (uL), peak height, peak area, actual RT (min), RT Delta, formula, adduct, m/z (Expected), m/z (Apex), m/z (Delta in ppm) and S/N (signa-to-noise)) of the steady state and the 13C6 glucose-traced metabolite measurements for the above mentioned (see title) publication in Cell Reports.</p> <p>The data was measured using either anion-chromatography coupled to high resolution mass spectrometry (for anionic compounds, including intermediates from the TCA cycle, glycolysis, pentose phosphate pathway and nucleotides) or ultra high performance liquid chromatography coupled to high resolution mass spectrometry (amine-containing compounds, including amino acids and polyamines). The methods used for extracting and analyzing the samples are described in detail in the above mentioned publication. The data deposited here is shown in figure 7a and b and figure S7a, b and c.</p> <p> </p> <p> </p>
Dataset for: Biological neurons act as generalization filters in reservoir computing
<p>This dataset contains the fluorescence traces from calcium imaging.<br> The data are provided in csv format, wherein the value represents relative fluorescent unit (⊿F/F) of neuron i (arranged in columns) at t-th frame (arranged in rows).<br> The time resolution of the recording is 50 ms/frame.</p> <p>A journal paper is to be published in PNAS with full details of materials and methods.<br> https://www.pnas.org/doi/abs/10.1073/pnas.2217008120</p> <p><br> File naming convention <br> ・"Spon.csv" is a data obtained in a spontaneous activity recording.<br> ・The other file s are named according to the delivered stimulus.<br> ・For the static pattern recognition task, "StimA", "StimB", and "StimC" correspond to the stimulation of the top, middle, and bottom regions in Figure 1B.<br> ・"_half" and "_quarter" refers to stimulations with reduced areas, described in Figure S2A.<br> ・For the speech recognition task, "f1" and "m1" represent the gender of the speakers, and "zero", "one", ... are spoken digits.<br> ・"_reverse" refers to a stimulation to a temporally-reversed input. </p>
Fig. 2. Key 1H–1H in A previously undescribed phenylethanoid glycoside from Callicarpa kwangtungensis Chun acts as an agonist of the Na/K-ATPase signal transduction pathway
Fig. 2. Key 1H–1H COSY and HMBC correlations of compounds 1 and 2.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.