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opencc-by-4.0Dec 2023View details →

FIGURE 3 in New species and evolution of the foraminiferal family Janischewskinidae in the middle-upper Mississippian of South China

FIGURE 3. Distribution of the Janischewskinidae in the Kacai section. Legend and abbreviations as in Figure 2, and additionally, Alek. — Aleksinian, Tar. — Tarusian, Pr. — Protvian, up. — upper, Jdz — Janischewskina delicata Zone, Bc — Bradyina cribrostomata Zone.

Figures 16‒18 in Contributions on the spider families Nesticidae and Pholcidae (Araneae) from Argentina

Figures 16‒18. Guaranita munda (Gertsch, 1982): male: 16. left palpus, retrolateral view (arrow points to dorsal flap on the procursus); 17. habitus, dorsal view. Scale bars 16‒17 = 0.20 mm. 18. Geographic distribution of G. munda (Gertsch, 1982).

Figures 9‒15 in Contributions on the spider families Nesticidae and Pholcidae (Araneae) from Argentina

Figures 9‒15. Guaranita dobby sp. nov.: male holotype: 9. habitus, lateral view; 10. prosoma, frontal view; 11. left palpus, prolateral view (arrow points to stridulatory pick); 12. retrolateral view (arrow points to dorsal flap on the procursus). Scale bars: 9‒10 = 0.20 mm; 11‒12 = 0.10 mm. Guaranita yaculica Huber, 2000: female: 13. epigynum, dorsal view; 14. epigynum, ventral view; 15. habitus, dorsal view. Scale bars: 13‒14 = 0.10 mm; 15 = 0.20 mm.

Figure 6 in Contributions on the spider families Nesticidae and Pholcidae (Araneae) from Argentina

Figure 6. Geographic distribution of Nesticus salta sp. nov., Guaranita dobby sp. nov., and G. yaculica Huber, 2000.

Figures 1‒5 in Contributions on the spider families Nesticidae and Pholcidae (Araneae) from Argentina

Figures 1‒5. Nesticus salta sp. nov.: male holotype: 1. left palpus, ventral view; 2. retrolateral view; 3. prolateral view; 4. prosoma, frontal view; 5. habitus, dorsal view. Scale bars: 1‒3 = 0.10 mm; 4‒5 = 0.20 mm. Abbreviations. (C) Conductor, (CB) Conductor basal portion, (CD) Conductor distal portion, (DP) Paracymbium dorsal process, (E) Embolus, (P) Paracymbium, (SPT) Suprategulum, (STP) Suprategular process, (T) Tegulum, (VP) Paracymbium ventral process.

opencc-by-4.0Nov 2024View details →

High genetic gains in wood volume and fecundity can be both achieved by direct selection in half-sib families of Pinus yunnanensis Franch.

Experiment background This study focused on characterizing phenotypic variation among and within provenances of Pinus yunnanensis Franch. aged 16 years in a common garden, with an emphasis on key traits such as cone production, trunk straightness, and crown health, as well as their relationships with traditional growth traits like tree height, diameter at breast height, and wood volume. Specifically, the objectives were to (1) characterize the variation of each trait within and among provenances; (2) assess inter-trait relationships, exploring patterns of co-variation and potential trade-offs; and (3) evaluate the feasibility of multi-trait selection strategies that aim for simultaneous improvements in growth, trunk straightness, and fecundity, contributing valuable insights for advancing P. yunnanensis breeding efforts. Experimental Design This study was conducted in a common garden for P. yunnanensis located in Lufeng County, central Yunnan Province (102°12' E, 25°13' N) at an altitude of 1860 meters. The site lies in the transition zone between the subtropical humid climate of eastern Yunnan and the sub-humid climate of southwest Yunnan. The climate is characterized by warm and dry winters, humid and hot summers, with a mean annual temperature of 15.5°C and annual precipitation ranging between 900–1000 mm. The dry season extends from November to April, accounting for 6%-17% of the total annual precipitation. The common garden was established in 2006, with progeny from 179 superior trees selected from six provenance regions, including Anning County (AN), Qujing City (QJ), Yongren County (YR), Yulong County (YL), Tengchong County (TC), and Ninglang County (NL). Each provenance includes 30 families, except for one provenance with 29 families. The common garden has an area of about 3 ha, with a random block design, and a planting scheme of 2 m × 3 m. <a name="_Hlk181695359"></a>To minimize environmental variation across the study site, a horizontal banding method was used for land preparation prior to planting. To reduce environmental variation across the study site, a horizontal banding method was used during land preparation. In each block, six provenances were randomly arranged, and families were randomly assigned within each provenance. Five plants from each family were planted in rows, and the design was replicated four times. A total of 3467 progeny from 179 superior trees across six provenances were included in the trial. Experimental Variables The study measured nine phenotypic traits, which included both quantitative and qualitative traits, as outlined below: Tree Height (H): Measured directly with a Vertex Laser instrument (DZH-30, Harbin, China) in meters (m). Diameter at Breast Height (D): Measured using a circumference tape in centimeters (cm). Crown Diameter (LCD, SCD): Long crown diameter (LCD) and short crown diameter (SCD), representing the maximum and minimum tree crown diameter, respectively, measured in meters (m) using a tower ruler. Height Under the Branch (TH): Measured in meters (m) using a tower ruler. Wood Volume (V): Estimated using the formula based on the forestry industry standard for P. yunnanensis (Agriculture and Forestry Ministry of China, 1977), with units in cubic meters (m³). Cone Production (CP): The number of open and closed cones in the canopy, including both serotinous and non-serotinous cones, recorded in counts to assess fecundity. Trunk Straightness (ST): A subjective visual assessment using a classification system: 1 for a highly twisted stem, 5 for a perfectly straight stem. Crown Health (CH): Visual assessment of the tree's crown, considering damage from abiotic and biotic stresses, with a grading scale from 1 (severely damaged) to 5 (perfectly healthy). Data Analysis Methods Data analysis was performed using R (version 3.6.3). The following statistical methods were employed: Variance Analysis: Nested variance analysis was used to evaluate the significance of differences and partition phenotypic variation among and within provenances. Principal Component Analysis (PCA): PCA was performed on the standardized matrix of nine phenotypic traits to reveal the dimensional structure and patterns of the data. Structural Equation Modeling (SEM): SEM was used to examine the direct and indirect relationships among traits, such as growth (H, D, V), crown size (LCD, SCD, TH), fecundity (CP), trunk straightness (ST), and crown health (CH). This analysis helped identify the causal pathways between the traits. Random Forest Analysis (RF): RF analysis was conducted to assess the importance of specific traits in predicting fecundity (CP) and trunk straightness (ST). Regression and classification methods were used for these analyses, with 1000 decision trees to ensure stable importance measures. Dataset Description The excel file (Raw Data) includes the following sheets: 1- Variables: Details on all the variables. 2- Values of phenotypic traits. 3- Variance components of phenotypic traits among and within provenances. 4- Coefficient of variance for phenotypic traits. 5- The average membership function values (SFM) and comprehensive weight of each principal component (PCA) of phenotypic traits.

opencc-by-4.0Oct 2024View details →

Data generated for the publication: Keeping it in the family: Using protein family templates to rescue poor AlphaFold models unliked

Data and manuscript of: Keeping it in the family: Using protein family templates to rescue low confidence AlphaFold2 models Francesco Costa1, Matthias Blum1 and Alex Bateman1 <ol> <li>European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton. CB10 1SD. UK</li> </ol> <ul> <li>results contains the workflow results;</li> <li>AF2_seed contains results of the comparison with AF2 run with multiple seeds;</li> </ul>

opencc-by-4.0Oct 2021View details →

Appendix 2 in A new subfamily classification of the Citrus family (Rutaceae) based on six nuclear and plastid markers

Appendix 2. Details about the character states of all included taxa for the 13 morphological and karyological characters.<table><thead><tr><th></th><th></th><th></th><th></th><th></th><th></th><th colspan="2">Characters</th><th></th><th></th><th></th><th></th><th></th><th></th></tr></thead><tbody><tr><th>Taxon</th><td>1</td><td>2</td><td>3</td><td>4</td><td>5</td><td colspan="2">6 7</td><td>8</td><td>9</td><td>10</td><td>11</td><td>12</td><td>13</td></tr><tr><th>Acmadenia</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Acradenia</th><td>1</td><td>1</td><td>2, 3</td><td>1</td><td>1</td><td>1</td><td>2</td><td>1</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Acronychia</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>1</td><td>1</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Adenandra</th><td>0</td><td>0, 1</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>2, 3</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Adiscanthus</th><td>0</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Aegle</th><td>0, 1</td><td>0</td><td>1, 2</td><td>2</td><td>0</td><td>4</td><td>0</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Aeglopsis</th><td>0, 1</td><td>0</td><td>1, 2, 3</td><td>1, 2</td><td>0</td><td>4</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Afraegle</th><td>1</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>4</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Agathosma A</th><td>0</td><td>0, 1, 2</td><td>2, 3</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Agathosma B</th><td>0</td><td>0, 1, 2</td><td>2, 3</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Agathosma C</th><td>0</td><td>0, 1, 2</td><td>2, 3</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Amyris</th><td>0, 1</td><td>0, 1</td><td>1, 2, 3</td><td>1</td><td>3</td><td>1</td><td>1</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Andreadoxa</th><td>0</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>0</td><td>0</td></tr><tr><th>Angostura</th><td>0, 1</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0, 1</td><td>1</td><td>0</td></tr><tr><th>Asterolasia</th><td>0</td><td>0</td><td>2</td><td>1</td><td>0, 1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Atalantia</th><td>0</td><td>0</td><td>1, 2, 3</td><td>1</td><td>0</td><td>0, 1</td><td>5</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Balfourodendron</th><td>1</td><td>1</td><td>1</td><td>0</td><td>0</td><td>1</td><td>4</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Balsamocitrus</th><td>0, 1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>4</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Bergera</th><td>0, 1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>?</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Boenninghausenia</th><td>1</td><td>0</td><td>1</td><td>1</td><td>1</td><td>2, 3</td><td>2</td><td>2</td><td>0</td><td>2</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Boronia A</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>0, 1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Boronia B</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>0, 1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Boronia C</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>0, 1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Boronia D (Boronella)</th><td>0</td><td>1, 2</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Bosistoa</th><td>0, 1</td><td>0</td><td>2</td><td>1</td><td>1</td><td>2, 3</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Bottegoa</th><td>1</td><td>0</td><td>1, 2</td><td>0</td><td>0</td><td>0</td><td>4</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Bouchardatia</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>3</td><td>2</td><td>0, 1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Brombya</th><td>0</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Burkillanthus</th><td>0, 1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>4</td><td>5</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Calodendrum</th><td>0</td><td>1, 2</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Casimiroa</th><td>0, 1</td><td>0</td><td>1, 2, 3</td><td>0</td><td>0</td><td>1, 2, 3</td><td>0, 1</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Cedrelopsis</th><td>1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1, 2</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Chloroxylon</th><td>1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>3</td><td>2</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Choisya</th><td>1</td><td>1</td><td>1, 2</td><td>1</td><td>1</td><td>1</td><td>2</td><td>2</td><td>2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Chorilaena</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Citropsis</th><td>0, 1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>0</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Citrus A</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Citrus B</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Taxon</th><td>1</td><td>2</td><td>3</td><td>4</td><td>5</td><td colspan="2">Characters 6 7</td><td>8</td><td>9</td><td>10</td><td>11</td><td>12</td><td>13</td></tr><tr><th>Citrus C</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Clausena</th><td>1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>1</td><td>0</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Clymenia (Citrus s.l.)</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Cneoridium</th><td>0</td><td>1</td><td>1</td><td>1</td><td>3</td><td>1, 2</td><td>0</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Cneorum</th><td>0</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Coatesia</th><td>0</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Coleonema</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Comptonella</th><td>0, 1</td><td>1</td><td>1</td><td>0, 1</td><td>0, 1</td><td>1</td><td>1</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Conchocarpus A</th><td>0, 1</td><td>0, 1</td><td>1, 2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0, 1</td><td>1</td><td>0</td></tr><tr><th>Conchocarpus B (Almeidea)</th><td>0</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Correa</th><td>0</td><td>1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>1</td><td>0</td></tr><tr><th>Crossosperma</th><td>1</td><td>1</td><td>1</td><td>1</td><td>0</td><td>0, 1</td><td>1</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Crowea</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Cyanothamnus</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Desmotes</th><td>0</td><td>1</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Dictamnus</th><td>1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>2</td><td>2</td><td>2</td><td>1</td><td>2</td><td>1</td><td>0</td><td>0</td></tr><tr><th>Dictyoloma</th><td>1</td><td>0</td><td>2</td><td>0</td><td>1</td><td>2</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Dinosperma</th><td>0, 1</td><td>0, 1, 2</td><td>1</td><td>1</td><td>1</td><td>1</td><td>2</td><td>0, 1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Diosma</th><td>0</td><td>0, 1</td><td>2</td><td>0, 1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Diplolaena</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Drummondita</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Dryades</th><td>0</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>?</td><td>?</td><td>0</td><td>0, 1</td><td>1</td><td>0</td></tr><tr><th>Dutaillyea</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>0</td><td>0, 1</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Empleurum</th><td>0</td><td>0</td><td>1</td><td>0</td><td>1, 3</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Eremocitrus (Citrus s.l.)</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Eriostemon</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Ertela</th><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>1, 2</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Erythrochiton</th><td>0</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0, 1</td><td>1</td><td>0</td></tr><tr><th>Esenbeckia</th><td>0, 1</td><td>0, 1</td><td>2, 3</td><td>0</td><td>0, 1</td><td>1</td><td>2</td><td>0, 1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Euchaetis</th><td>0</td><td>0, 1</td><td>2</td><td>0, 1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Euodia</th><td>0, 1</td><td>1</td><td>1</td><td>0, 1</td><td>1</td><td>1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Fagaropsis</th><td>1</td><td>1</td><td>1, 2, 3</td><td>0, 1</td><td>0</td><td>0</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Feroniella</th><td>1</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Flindersia</th><td>0, 1</td><td>0, 1</td><td>2</td><td>1</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 3</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Fortunella (Citrus s.l.)</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Galipea</th><td>0, 1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Geijera</th><td>0</td><td>0</td><td>0, 1, 2</td><td>0</td><td>1</td><td>1</td><td>3</td><td>1</td><td>3</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Geleznowia</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Glycosmis</th><td>0, 1</td><td>0</td><td>1, 2</td><td>0, 1</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Halfordia</th><td>0</td><td>0</td><td>2</td><td>1</td><td>0</td><td>0</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Haplophyllum</th><td>0, 1</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1, 2, 3</td><td>2</td><td>2</td><td>0</td><td>1, 2</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Harrisonia</th><td>1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>0</td><td>1</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Helietta</th><td>1</td><td>0, 1</td><td>1, 2</td><td>0</td><td>0</td><td>1</td><td>4</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Hortia</th><td>0</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1</td><td>0, 1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Taxon</th><td>1</td><td>2</td><td>3</td><td>4</td><td>5</td><td colspan="2">Characters 6 7</td><td>8</td><td>9</td><td>10</td><td>11</td><td>12</td><td>13</td></tr><tr><th>Ivodea</th><td>0</td><td>0, 1, 2</td><td>1, 2</td><td>0, 1</td><td>1</td><td>1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Leionema A</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0, 1</td><td>0</td></tr><tr><th>Leionema B</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0, 1</td><td>0</td></tr><tr><th>Limonia</th><td>1</td><td>0</td><td>1, 2, 3</td><td>1</td><td>0</td><td>4</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Lunasia</th><td>0</td><td>0</td><td>0</td><td>0</td><td>1</td><td>0</td><td>2</td><td>0, 1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Luvunga</th><td>0, 1</td><td>0</td><td>0, 1, 2</td><td>1</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Maclurodendron</th><td>0</td><td>1</td><td>1</td><td>1</td><td>0</td><td>1</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Macrostylis</th><td>0</td><td>0, 1</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Medicosma</th><td>0, 1</td><td>0, 1, 2</td><td>1</td><td>0, 1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Melicope A</th><td>0, 1</td><td>1</td><td>1</td><td>0, 1</td><td>1</td><td>1</td><td>3</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Melicope B</th><td>0, 1</td><td>1</td><td>1</td><td>0</td><td>0, 1</td><td>1</td><td>3</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Melicope C</th><td>0, 1</td><td>1, 2</td><td>1</td><td>0, 1</td><td>0, 1</td><td>1</td><td>3</td><td>2</td><td>0, 1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Melicope D</th><td>0, 1</td><td>1</td><td>1</td><td>0</td><td>1</td><td>0, 1</td><td>3</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Melicope E (Platydesma)</th><td>0</td><td>0, 1</td><td>1</td><td>1</td><td>0</td><td>2, 3</td><td>3</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Merope</th><td>0</td><td>0</td><td>2</td><td>1</td><td>0</td><td>1, 2</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Merrillia</th><td>1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>3</td><td>0</td><td>0</td><td>?</td><td>0</td><td>1</td><td>0</td><td>0</td></tr><tr><th>Metrodorea</th><td>0, 1</td><td>1</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>0, 1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Microcitrus (Citrus s.l.)</th><td>0</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Microcybe</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Micromelum</th><td>0, 1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Monanthocitrus</th><td>0</td><td>0</td><td>2</td><td>1</td><td>0</td><td>1, 2, 3</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Muiriantha</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>1</td><td>0</td></tr><tr><th>Murraya</th><td>1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Myrtopsis</th><td>0</td><td>1</td><td>1, 2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>?</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Naringi</th><td>0, 1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>0, 1</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Nematolepis</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0, 1</td><td>0</td></tr><tr><th>Neobyrnesia</th><td>0</td><td>1</td><td>1</td><td>0</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Neoraputia</th><td>0, 1</td><td>0, 1</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Neoschmidea</th><td>0</td><td>0</td><td>1, 2</td><td>1</td><td>1</td><td>1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Orixa</th><td>0</td><td>0</td><td>1</td><td>0</td><td>1</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Pamburus</th><td>0</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>1</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Paramignya</th><td>0</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Peltostigma</th><td>0, 1</td><td>0</td><td>0, 1, 2, 3</td><td>1, 2</td><td>0</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Pentaceras</th><td>1</td><td>0</td><td>2</td><td>1</td><td>1</td><td>1</td><td>1, 4</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Perryodendron</th><td>0</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>3</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Phebalium</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Phellodendron</th><td>1</td><td>1</td><td>2</td><td>0</td><td>0</td><td>0</td><td>1</td><td>1</td><td>2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Philotheca A</th><td>0</td><td>0</td><td>1, 2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0, 1</td><td>0</td></tr><tr><th>Philotheca B</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0, 1</td><td>0</td></tr><tr><th>Phyllosma</th><td>0</td><td>0</td><td>2</td><td>0, 1</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Picrella</th><td>0, 1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>0, 1</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Pilocarpus</th><td>0, 1</td><td>0</td><td>1, 2</td><td>0</td><td>0</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Pitavia</th><td>0</td><td>1, 2</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Pitaviaster</th><td>0</td><td>1</td><td>1</td><td>0</td><td>1</td><td>1</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Taxon</th><td>1</td><td>2</td><td>3</td><td>4</td><td>5</td><td colspan="2">Characters 6 7</td><td>8</td><td>9</td><td>10</td><td>11</td><td>12</td><td>13</td></tr><tr><th>Pleiospermium</th><td>0, 1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>1</td><td>5</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Plethadenia</th><td>1</td><td>0, 1</td><td>1</td><td>1</td><td>2</td><td>0</td><td>2</td><td>?</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Poncirus (Citrus s.l.)</th><td>1</td><td>0</td><td>1, 2, 3</td><td>2</td><td>0</td><td>1, 2, 3</td><td>5</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Psilopeganum</th><td>1</td><td>0</td><td>1, 2</td><td>1</td><td>1</td><td>2, 3</td><td>2</td><td>2</td><td>?</td><td>2</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Ptaeroxylon</th><td>1</td><td>1</td><td>1</td><td>0</td><td>0</td><td>0</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Ptelea</th><td>1</td><td>0</td><td>1, 2, 3</td><td>0</td><td>0</td><td>1</td><td>2, 4</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Rauia</th><td>0, 1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0</td><td>1</td><td>0</td></tr><tr><th>Ravenia</th><td>0, 1</td><td>1</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Rhadinothamnus</th><td>0</td><td>0</td><td>2</td><td>1</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0, 1</td><td>0</td></tr><tr><th>Ruta</th><td>1</td><td>0</td><td>1, 2</td><td>1</td><td>0</td><td>4</td><td>2</td><td>2</td><td>0, 1, 2</td><td>1, 2</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Sarcomelicope</th><td>0</td><td>1, 2</td><td>1</td><td>1</td><td>0, 1</td><td>1</td><td>1</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Severinia</th><td>0</td><td>0</td><td>1, 2, 3</td><td>1</td><td>0</td><td>0, 1</td><td>5</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Sheilanthera</th><td>0</td><td>0</td><td>2</td><td>0</td><td>1</td><td>0, 1</td><td>2</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Sigmatanthus</th><td>1</td><td>0</td><td>2</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Skimmia</th><td>0</td><td>0</td><td>1, 2, 3</td><td>0</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Sohnreyia</th><td>1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>0, 1</td><td>4</td><td>0, 1, 2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Spathelia</th><td>1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>0, 1</td><td>4</td><td>0, 1, 2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Spiranthera</th><td>1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Swinglea</th><td>1</td><td>0</td><td>2</td><td>1</td><td>0</td><td>4</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Tetractomia</th><td>0</td><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td>3</td><td>2</td><td>?</td><td>0</td><td>0</td><td>0</td><td>1</td></tr><tr><th>Tetradium</th><td>1</td><td>1</td><td>1, 2</td><td>0</td><td>1</td><td>0, 1</td><td>3</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Thamnosma</th><td>0</td><td>0</td><td>1</td><td>1</td><td>0</td><td>2, 3</td><td>2</td><td>2</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Toxosiphon</th><td>0, 1</td><td>0</td><td>2</td><td>0</td><td>0</td><td>1</td><td>2</td><td>1</td><td>?</td><td>0</td><td>1</td><td>1</td><td>0</td></tr><tr><th>Triphasia</th><td>0, 1</td><td>0</td><td>0, 2</td><td>1</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0, 1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Vepris</th><td>0, 1</td><td>0, 1</td><td>1</td><td>0, 1</td><td>0, 3</td><td>0, 1</td><td>1</td><td>2</td><td>1</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Wenzelia</th><td>0</td><td>0</td><td>2</td><td>1</td><td>0</td><td>3</td><td>0</td><td>0</td><td>?</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Zanthoxylum A</th><td>0, 1</td><td>0</td><td>1, 2</td><td>0</td><td>1</td><td>1</td><td>3</td><td>1, 2</td><td>1, 2, 3</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Zanthoxylum B</th><td>0, 1</td><td>0</td><td>1, 2</td><td>0</td><td>1</td><td>1</td><td>3</td><td>1, 2</td><td>1, 2, 3</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Zanthoxylum C</th><td>0, 1</td><td>0</td><td>0, 1, 2, 3</td><td>0</td><td>1</td><td>1</td><td>3</td><td>1, 2</td><td>1, 2, 3</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Zanthoxylum D (Toddalia)</th><td>0, 1</td><td>0</td><td>1, 2, 3</td><td>0</td><td>0</td><td>1</td><td>1</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr><tr><th>Zieria</th><td>0, 1</td><td>1</td><td>1</td><td>0</td><td>1</td><td>0, 1</td><td>2</td><td>2</td><td>1, 2</td><td>0</td><td>0</td><td>0</td><td>0</td></tr></tbody></table>1. Leaf type: (0) simple/unifoliolate; (1) compound. 2. Phyllotaxis: (0) alternate; (1) opposite; (2) whorled. 3. Flower merosity: (0) 3-merous; (1) 4-merous; (2) 5-merous; (3) polymerous. 4. Stamen whorls: (0) haplostemonous; (1) diplostemonous; (2) more than two whorls. 5. Carpel connation: (0) syncarpous; (1) syncarpous (style only); (2) apocarpous (no joined style); (3) one carpel. 6. Ovules per locule: (0) 1; (1) 2; (2) 3–5; (3) 6–10; (4)>10. 7. Fruit type: (0) berry; (1) drupe; (2) dehiscent with seeds detached; (3) dehiscent with seeds attached; (4) samara; (5) hesperidium. 8. Endosperm: (0) lacking; (1) scanty; (2) copious. 9. Chromosomes: (0) 9–10; (1) 14–18; (2) 28–36; (3) ≥64. 10. Growth form: (0) shrubs or trees; (1) subshrubs; (2) perennial herbs. 11. Flower symmetry: (0) actinomorphic; (1) zygomorphic. 12. Tubular corolla: (0) petals free and not forming a tube; (1) petals coherent or connate and forming a corolla tube. 13. Seeds: (0) not winged; (1) winged(Continues)(Continues)

opencc-by-4.0Nov 2024View details →

Data for phylogenomic analysis of chelicerate gene family evolution

We used phylogenomics to investigate patterns of gene family evolution across ticks and other chelicerates, which include a diverse array of parasites. We used phylogenetic profiling and trait-association tests to predict gene families that may enable parasitic species to feed on hosts undetected for prolonged periods (>1 day). This release accompanies the pub, “<a href="https://doi.org/10.57844/arcadia-4e3b-bbea">Comparative phylogenomic analysis of Chelicerates points to gene families associated with long-term suppression of host detection</a>." Please see the pub for more information. <ul> <li>chelicerata-v1-10062023.zip contains the outputs from NovelTree that are needed as inputs for phylogenetic profiling.</li> <li>annotated.zip contains gene annotations used to do orthogroup filtering.</li> <li>tx2gene.tsv has presence/absence of expression for each Amblyomma americanum transcript. </li> <li>chelicerate_proteome_preprocessing_outputs.zip contains the outputs of chelicerate protein data curation.</li> <li>chelicerata-v1-parameterfile.json & chelicerata-v1-samplesheet.csv were inputs for setting up the initial NovelTree run.</li> <li>2024-06-24-all-chelicerate-noveltree-proteins.fasta has the full set of chelicerate protein sequences.</li> <li>summary_of_noveltree_results.zip contains summary figures from the outputs of the NovelTree run.</li> <li>chelicerate-samples.tsv is the sample sheet used in proteome curation upstream of NovelTree.</li> </ul>

opencc-by-4.0Nov 2024View details →

Dataset of the publication: Tunable SIM properties in a family of 3D anilato-based Lanthanide-MOFs

Dataset of the publication: Tunable SIM properties in a family of 3D anilato-based Lanthanide-MOFs DOI: 10.1039/d4qi01549e N. Monni, S. Dey, V. García-López, M. Oggianu, J. J. Baldoví, M. L. Mercuri, M. Clemente-León, E. Coronado Inorg. Chem. Front., 11, 5913-5923 (2024)

opencc-by-4.0Jul 2023View details →

Extended data 'It's become a theatre': relational experiences of family carers and people with Amyotrophic lateral sclerosis (ALS) after cognitive impairment emerges [Version 2]

This upload contains suplimentary files to the research article ‘It’s become a theatre’: relational experiences of family carers and people with Amyotrophic lateral sclerosis (ALS) after cognitive impairment emerges [Version 2]

opencc-by-4.0Jul 2024View details →

Gaia DR3 asteroid reflectance spectra: L-type families, memberships and ages

The Gaia Data Release 3 (DR3) contains reflectance spectra at visible wavelengths for 60,518 asteroids over the range between 374-1034 nm, representing a large sample that is well suited to studies of asteroid families. We wanted to assess the potential of Gaia spectra in identifying asteroid family members. Here, we focus on two L-type families, namely Tirela/Klumpkea and Watsonia. These families are known for their connection to Barbarian asteroids, which are potentially abundant in calcium-aluminum rich inclusions (CAIs). The method we developed to establish family memberships is based (1) on a color taxonomy specifically built on Gaia data and (2) on the similarity of spectra of candidate members with the template spectrum of a specific family. Our work demonstrates the advantage of combining the classical hierarchical clustering method (HCM) approach to spectral properties obtained by Gaia for the study of asteroid families. Future data releases are expected to further expand the capabilities in this domain. The memberships for the Tirela/Klumpkea and Watsonia families are reported here. The columns report, from left to right: the identifier of the asteroid, the absolute magnitude, the proper elements (semi-major axis, eccentricity and sine of the inclination, taken from AFP, Novaković et al., 2022), NEOWISE albedo (Masiero et al., 2011) and spectral type from our color taxonomy. For the objects that are not directly classified into the S and L classes, their most probable spectral type is also reported.

opencc-by-4.0Sep 2024View details →

Data and Code: Familial transmission of neural representations for mental arithmetic across two generations

Here we provide anonymized behavioral data, individual beta maps and analyses codes used in "Familial transmission of neural representations for mental arithmetic across two generations". Because of anonymization concerns within the framework of EU privacy regulations (<a href="https://gdpr-info.eu/">GDPR</a>), we cannot provide raw MRI data.  Therefore, the fMRI data consists of individual beta maps from the first-level analysis, which correspond to the brain activity associated with increases in problem size for each operation (addition and subtraction). Maps are normalized into the MNI template. See paper for details about the preprocessing and first-level analysis. The dataset consists of mother-child dyads. Mothers are assigned codes of 200 or higher. Children are assigned codes below 200. Each child's code is exactly 200 less than their mother's code. The analyses codes require Python version 3.8.8 and Nilearn version 0.8.1. If you have any questions, please send an email to charlotte.constant@inserm.fr.

opencc-by-4.0Oct 2021View details →

Our predicted Crinkler (CRN) family effector proteins and the corresponding GFF3 files across 128 Phytophthora isolates

These files contain predicted Crinkler (CRN) family effector proteins and the corresponding GFF3 files across 128 Phytophthora isolates.

Fig. 8 in The spider family Oecobiidae (Arachnida: Araneae) in Iran, Afghanistan and Turkmenistan

Fig. 8. Epigynes of Uroctea grossa Roewer, 1960; ventral view. A. Holotype, ♀ (GNM-A497). B. ♀ from Mazandaran Province, Larijan (MHNG). C. ♀ from Sistan and Baluchistan Province, surroundings of Taftan volcano (MHNG). D. ♀ from Turkmenistan (SMF38817). Scale bars = 0.5 mm.

Fig. 9 in The spider family Oecobiidae (Arachnida: Araneae) in Iran, Afghanistan and Turkmenistan

Fig. 9. Vulvae of Uroctea grossa Roewer, 1960; dorsal view. A. ♀ from Mazandaran Province, Larijan (MHNG). B. Holotype, ♀ (GNM-A497). C. ♀ from Turkmenistan (SMF38817). D. ♀ from Sistan and Baluchistan Province, surroundings of Taftan volcano (MHNG). Scale bars = 0.5 mm.

Fig. 7. Left male palps. A–C. Uroctea grossa Roewer, 1960 in The spider family Oecobiidae (Arachnida: Araneae) in Iran, Afghanistan and Turkmenistan

Fig. 7. Left male palps. A–C. Uroctea grossa Roewer, 1960, ♂ from Sistan and Baluchistan Province, surroundings of Taftan volcano (MHNG). D–F. Uroctea gambronica sp. nov., holotype, ♂ (NMP- P6j-180/2002). G. Uroctea thaleri Rheims, Santos & van Harten, 2007, ♂ from Hormozgan Province, Minab County (MHNG). A, D, G = prolateral view; B, E = ventral view; C, F = retrolateral view. Scale bars = 1 mm.

Fig. 6. Abdominal patterns, dorsal views. A–D. Uroctea grossa Roewer, 1960. A–B in The spider family Oecobiidae (Arachnida: Araneae) in Iran, Afghanistan and Turkmenistan

Fig. 6. Abdominal patterns, dorsal views. A–D. Uroctea grossa Roewer, 1960. A–B. ♀♀ from Iran, Damavand County, Havir village (MHNG). C. ♀ from Mazandaran Province, Larijan (MHNG). D. ♂ from Mazandaran Province, Larijan (MHNG). E. Uroctea gambronica sp. nov., holotype, ♂ (NMP-P6j-180/2002). F. Uroctea thaleri Rheims, Santos & van Harten, 2007, ♂ from Hormozgan Province, Minab County (MHNG). Scale bars = 2 mm.

Fig. 4. Leg spination schematics. A. Legend. B. Uroctea hashemitorum Bosselaers, 1999 in The spider family Oecobiidae (Arachnida: Araneae) in Iran, Afghanistan and Turkmenistan

Fig. 4. Leg spination schematics. A. Legend. B. Uroctea hashemitorum Bosselaers, 1999, holotype, ♂ (RBINS). C. Uroctea durandi (Latreille, 1809), ♂ from Spain, Catalonia, Empordà (CJB-3992). D. Uroctea durandi, ♀ from Spain, Catalonia, Empordà (CJB-2198). E. Uroctea thaleri Rheims, Santos & van Harten, 2007, ♂ from Hormozgan Province, Minab County (MHNG). F. Uroctea grossa Roewer, 1960, ♂ from Sistan and Baluchistan Province, surroundings of Taftan volcano (MHNG). G. Uroctea grossa, holotype, ♀ (GNM-A497). H. Uroctea gambronica sp. nov., holotype, ♂ (NMP- P6j-180/2002).

Fig. 3 in The spider family Oecobiidae (Arachnida: Araneae) in Iran, Afghanistan and Turkmenistan

Fig. 3. Live habitus and tent web of oecobiids. A. Oecobius ferdowsii Mirshamsi, Zamani & Marusik, 2017, ♀. B. Oecobius nadiae (Spassky, 1936), ♀. C. Oecobius putus O. Pickard-Cambridge, 1876, ♂. D. Uroctea thaleri Rheims, Santos & van Harten, 2007, juvenile. E. Uroctea grossa Roewer, 1960, ♀. F. Tent web of Uroctea grossa. A–C, E–F by Alireza Zamani; D courtesy of Mahmoud Kolnegari.